gen3-dataops-toolkit 5.0.0__tar.gz → 5.0.2__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/PKG-INFO +1 -1
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/pyproject.toml +1 -1
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/dict_cmds.py +8 -1
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/utils/athena_utils.py +22 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/README.md +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/__init__.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/__init__.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/_internal/__init__.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/_internal/aws_quiet.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/_internal/dispatch.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/_internal/helptext.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/_internal/registry.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/_internal/resolve.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/_internal/runner.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/_internal/safety.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/config_cmds.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/delete_cmds.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/ec2_cmds.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/indexd_cmds.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/jobs.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/k8s.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/main.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/metadata.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/pipeline_cmds.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/release_cmds.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/study_cmds.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/cli/synth.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/config.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/contexts.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/import_order.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/indexd/__init__.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/indexd/file_access.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/indexd/indexd_registrar.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/ingest/ingest.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/resolver.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/delete/delete_all_metadata_for_project.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/delete/delete_metadata.sh +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/delete/delete_metadata_by_guid.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/delete/delete_synth_metadata_by_version.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/dictionary/deploy_dd.sh +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/dictionary/pull_dict.sh +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/dictionary/upload_dictionary.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/indexd/register_indexd.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/indexd/verify_file_access.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/k8s_ops/argocd_restart_etl.sh +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/k8s_ops/argocd_restart_ms.sh +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/k8s_ops/argocd_restart_schema.sh +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/k8s_ops/login_to_pod.sh +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/k8s_ops/restart_etl_and_ms.sh +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/synthetic_data/delete_synth_metadata_sheepdog.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/synthetic_data/full_deploy_dd_and_synth.sh +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/synthetic_data/generate_synth_metadata.sh +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/synthetic_data/upload_synth_metadata_sheepdog.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/upload/metadata/upload_all_studies.sh +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/services/upload/metadata/upload_metadata.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/studies.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/upload/__init__.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/upload/metadata_deleter.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/upload/metadata_submitter.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/upload/upload_synthdata_s3.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/utils/dbt_utils.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/utils/release_writer.py +0 -0
- {gen3_dataops_toolkit-5.0.0 → gen3_dataops_toolkit-5.0.2}/src/g3dt/validate/validate.py +0 -0
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@@ -37,6 +37,11 @@ def _version(env_cfg, override):
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return override or env_cfg.dictionary_version
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def _bare_version(v) -> str:
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"""``v1.2.0`` / ``1.2.0`` / ``V1.2.0`` -> ``1.2.0`` (None -> "")."""
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return (v or "").strip().lstrip("vV")
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def warn_if_overridden(env_cfg, version: Optional[str]) -> None:
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"""Say so, loudly, when the deployed version isn't the one SSM declares.
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@@ -148,7 +153,9 @@ def status(
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stamp = deployed or "(no version stamp on the object)"
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when = uploaded.strftime("%Y-%m-%d %H:%M %Z") if hasattr(uploaded, "strftime") else uploaded
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typer.echo(f"deployed : {stamp} (s3://{location}, uploaded {when})")
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-
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# The S3 stamp is the JSON's _settings _dict_version (often "1.2.0")
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# while the declared tag carries the git "v" prefix; the same version.
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state = "in sync" if _bare_version(deployed) == _bare_version(declared) else "DRIFT"
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if state == "in sync":
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typer.secho("status : in sync", fg=typer.colors.GREEN)
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return
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@@ -915,6 +915,28 @@ def write_gold_json_to_s3(
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logger.info(f"Object created at s3://{s3_bucket}/{s3_object_key}")
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def construct_data_import_order(s3_uri: str) -> list:
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"""Submission order (parents first) of the dictionary bundle at ``s3_uri``.
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Kept for the aws-gen3-pipeline release-export Glue job
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(``write_data_release_to_json.py``), which imports this name from here to
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write each release's ``DataImportOrder.txt``. 5.0.0 moved the derivation
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to :mod:`g3dt.import_order` and dropped the name, so any deployment with
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``toolkitVersion >= 5.0.0`` failed its release export with
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``ImportError: cannot import name 'construct_data_import_order'``.
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Delegates to :func:`g3dt.import_order.derive_import_order` (a topological
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sort of the raw bundle). Compared with the pre-5.0 gen3_validator order it
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omits the unsubmittable ``program`` node and does not force
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the upload only uses the file to sequence the node JSONs it finds.
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"""
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def write_release_jsons_to_s3(s3_bucket, release_id, study_id, table_name, json_data,
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"""
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