gen3-dataops-toolkit 3.7.2__tar.gz → 3.7.4__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/PKG-INFO +1 -1
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/pyproject.toml +1 -1
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/synth.py +6 -2
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/upload/metadata_submitter.py +20 -1
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/README.md +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/__init__.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/__init__.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/_internal/__init__.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/_internal/dispatch.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/_internal/registry.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/_internal/resolve.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/_internal/runner.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/_internal/safety.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/config_cmds.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/delete_cmds.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/dict_cmds.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/ec2_cmds.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/indexd_cmds.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/jobs.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/k8s.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/main.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/metadata.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/pipeline_cmds.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/cli/release_cmds.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/config.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/indexd/__init__.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/indexd/file_access.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/indexd/indexd_registrar.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/ingest/ingest.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/resolver.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/delete/delete_all_metadata_for_project.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/delete/delete_metadata.sh +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/delete/delete_metadata_by_guid.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/dictionary/deploy_dd.sh +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/dictionary/pull_dict.sh +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/dictionary/upload_dictionary.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/indexd/register_indexd.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/indexd/verify_file_access.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/k8s_ops/argocd_restart_etl.sh +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/k8s_ops/argocd_restart_ms.sh +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/k8s_ops/argocd_restart_schema.sh +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/k8s_ops/login_to_pod.sh +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/k8s_ops/restart_etl_and_ms.sh +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/synthetic_data/delete_synth_metadata_sheepdog.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/synthetic_data/full_deploy_dd_and_synth.sh +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/synthetic_data/generate_synth_metadata.sh +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/synthetic_data/upload_synth_metadata_sheepdog.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/upload/metadata/upload_all_studies.sh +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/services/upload/metadata/upload_metadata.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/upload/__init__.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/upload/metadata_deleter.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/upload/upload_synthdata_s3.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/utils/athena_utils.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/utils/dbt_utils.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/utils/release_writer.py +0 -0
- {gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/validate/validate.py +0 -0
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@app.command(name="install-simulator")
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def install_simulator() -> None:
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"""Install the gen3-metadata-simulator generator (the 'synth' extra)."""
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"""Install or upgrade the gen3-metadata-simulator generator (the 'synth' extra)."""
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import sys
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# --upgrade so re-running after a simulator release actually updates it;
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# without it pip leaves an existing (stale) install untouched.
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runner.run(
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[sys.executable, "-m", "pip", "install", "--upgrade", "gen3-metadata-simulator"]
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)
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{gen3_dataops_toolkit-3.7.2 → gen3_dataops_toolkit-3.7.4}/src/g3dt/upload/metadata_submitter.py
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@@ -866,8 +866,27 @@ class MetadataSubmitter:
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athena_s3_output (str): S3 path for Athena query results output.
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workgroup (str): Athena workgroup to use.
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table_location (str): S3 location for the Iceberg table.
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Raises:
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RuntimeError: Immediately (no retries) when there are no
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submission results to record — retrying an empty receipts
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write can never succeed and its terminal error
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("DataFrame cannot be empty" after N attempts) buries the
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real cause, which is whatever made every chunk fail
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(observed live: sheepdog 403s on acdc/staging).
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"""
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msg = (
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"sheepdog, so the receipts write is skipped. The real cause is "
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"whatever failed the submission chunks — see the "
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"[SUBMIT]/[RETRY] errors above (e.g. 403 authorization "
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"failures)."
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)
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logger.critical(msg)
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raise RuntimeError(msg)
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@retry(
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