gen3-dataops-toolkit 3.7.1__tar.gz → 3.7.3__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/PKG-INFO +1 -1
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/pyproject.toml +1 -1
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/synth.py +6 -2
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/synthetic_data/upload_synth_metadata_sheepdog.py +14 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/README.md +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/__init__.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/__init__.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/_internal/__init__.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/_internal/dispatch.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/_internal/registry.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/_internal/resolve.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/_internal/runner.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/_internal/safety.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/config_cmds.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/delete_cmds.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/dict_cmds.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/ec2_cmds.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/indexd_cmds.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/jobs.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/k8s.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/main.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/metadata.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/pipeline_cmds.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/cli/release_cmds.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/config.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/indexd/__init__.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/indexd/file_access.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/indexd/indexd_registrar.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/ingest/ingest.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/resolver.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/delete/delete_all_metadata_for_project.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/delete/delete_metadata.sh +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/delete/delete_metadata_by_guid.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/dictionary/deploy_dd.sh +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/dictionary/pull_dict.sh +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/dictionary/upload_dictionary.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/indexd/register_indexd.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/indexd/verify_file_access.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/k8s_ops/argocd_restart_etl.sh +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/k8s_ops/argocd_restart_ms.sh +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/k8s_ops/argocd_restart_schema.sh +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/k8s_ops/login_to_pod.sh +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/k8s_ops/restart_etl_and_ms.sh +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/synthetic_data/delete_synth_metadata_sheepdog.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/synthetic_data/full_deploy_dd_and_synth.sh +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/synthetic_data/generate_synth_metadata.sh +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/upload/metadata/upload_all_studies.sh +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/services/upload/metadata/upload_metadata.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/upload/__init__.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/upload/metadata_deleter.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/upload/metadata_submitter.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/upload/upload_synthdata_s3.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/utils/athena_utils.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/utils/dbt_utils.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/utils/release_writer.py +0 -0
- {gen3_dataops_toolkit-3.7.1 → gen3_dataops_toolkit-3.7.3}/src/g3dt/validate/validate.py +0 -0
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@app.command(name="install-simulator")
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def install_simulator() -> None:
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"""Install the gen3-metadata-simulator generator (the 'synth' extra)."""
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"""Install or upgrade the gen3-metadata-simulator generator (the 'synth' extra)."""
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import sys
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# --upgrade so re-running after a simulator release actually updates it;
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# without it pip leaves an existing (stale) install untouched.
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runner.run(
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[sys.executable, "-m", "pip", "install", "--upgrade", "gen3-metadata-simulator"]
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)
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DEFAULT_PROFILE = None # ambient credentials unless --aws-profile is given
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DEFAULT_SUBMISSION_SIZE_KB = 50
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# Nodes never submitted from a synthetic batch. The first four are the
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# structural nodes MetadataSubmitter always excludes; core_metadata_collection
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# is excluded here too because the simulator fills its date-time fields with
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# random words, which Sheepdog rejects (400) — and synthetic data has no use
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# for it anyway.
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EXCLUDE_NODES = [
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"program",
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"project",
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"acknowledgement",
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"publication",
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"core_metadata_collection",
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]
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def submit_synthetic_metadata(
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exclude_nodes=EXCLUDE_NODES,
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upload_to_database=False,
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