gen3-dataops-toolkit 3.5.0__tar.gz → 3.5.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/PKG-INFO +1 -1
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/pyproject.toml +1 -1
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/config.py +16 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/README.md +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/__init__.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/__init__.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/_internal/__init__.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/_internal/dispatch.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/_internal/registry.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/_internal/resolve.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/_internal/runner.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/_internal/safety.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/config_cmds.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/delete_cmds.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/dict_cmds.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/ec2_cmds.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/indexd_cmds.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/jobs.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/k8s.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/main.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/metadata.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/pipeline_cmds.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/release_cmds.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/synth.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/indexd/__init__.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/indexd/file_access.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/indexd/indexd_registrar.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/ingest/ingest.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/resolver.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/delete/delete_all_metadata_for_project.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/delete/delete_metadata.sh +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/delete/delete_metadata_by_guid.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/dictionary/deploy_dd.sh +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/dictionary/pull_dict.sh +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/dictionary/upload_dictionary.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/indexd/register_indexd.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/indexd/verify_file_access.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/k8s_ops/argocd_restart_etl.sh +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/k8s_ops/argocd_restart_ms.sh +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/k8s_ops/argocd_restart_schema.sh +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/k8s_ops/login_to_pod.sh +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/k8s_ops/restart_etl_and_ms.sh +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/synthetic_data/delete_synth_metadata_sheepdog.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/synthetic_data/full_deploy_dd_and_synth.sh +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/synthetic_data/generate_synth_metadata.sh +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/synthetic_data/upload_synth_metadata_sheepdog.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/upload/metadata/upload_all_studies.sh +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/upload/metadata/upload_metadata.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/upload/__init__.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/upload/metadata_deleter.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/upload/metadata_submitter.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/upload/upload_synthdata_s3.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/utils/athena_utils.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/utils/dbt_utils.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/utils/release_writer.py +0 -0
- {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/validate/validate.py +0 -0
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@@ -428,8 +428,24 @@ def script_env(e: EnvConfig, version: Optional[str] = None) -> Dict[str, str]:
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scripts compose a URL keeps Python the single source of truth: the scripts
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read ``G3DT_DICT_URL``/``G3DT_DICT_FILENAME`` and never build either
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themselves, so there is only one implementation to keep correct.
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+
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The interpreter's own bin directory is prepended to PATH: console scripts
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installed next to g3dt — gen3-metadata-simulator via
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``g3dt synth install-simulator`` — land there, but a pipx install exposes
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only g3dt's own entry points on the caller's PATH, so without this the
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wrapped scripts' ``command -v gen3-metadata-simulator`` check fails even
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though the tool is installed.
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"""
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import sys
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env = dict(os.environ)
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# No .resolve(): a venv's python is a symlink to the base interpreter, and
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# resolving it would point at the base install's bin instead of the venv
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# bin where console scripts are actually created.
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venv_bin = str(Path(sys.executable).parent)
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path_entries = env.get("PATH", "").split(os.pathsep)
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if venv_bin not in path_entries:
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env["PATH"] = venv_bin + os.pathsep + env.get("PATH", "")
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values = {
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"G3DT_ENV": e.name,
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"G3DT_REGION": e.region,
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