gen3-dataops-toolkit 3.5.0__tar.gz → 3.5.1__tar.gz

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Files changed (56) hide show
  1. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/PKG-INFO +1 -1
  2. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/pyproject.toml +1 -1
  3. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/config.py +16 -0
  4. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/README.md +0 -0
  5. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/__init__.py +0 -0
  6. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/__init__.py +0 -0
  7. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/_internal/__init__.py +0 -0
  8. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/_internal/dispatch.py +0 -0
  9. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/_internal/registry.py +0 -0
  10. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/_internal/resolve.py +0 -0
  11. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/_internal/runner.py +0 -0
  12. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/_internal/safety.py +0 -0
  13. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/config_cmds.py +0 -0
  14. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/delete_cmds.py +0 -0
  15. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/dict_cmds.py +0 -0
  16. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/ec2_cmds.py +0 -0
  17. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/indexd_cmds.py +0 -0
  18. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/jobs.py +0 -0
  19. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/k8s.py +0 -0
  20. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/main.py +0 -0
  21. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/metadata.py +0 -0
  22. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/pipeline_cmds.py +0 -0
  23. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/release_cmds.py +0 -0
  24. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/cli/synth.py +0 -0
  25. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/indexd/__init__.py +0 -0
  26. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/indexd/file_access.py +0 -0
  27. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/indexd/indexd_registrar.py +0 -0
  28. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/ingest/ingest.py +0 -0
  29. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/resolver.py +0 -0
  30. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/delete/delete_all_metadata_for_project.py +0 -0
  31. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/delete/delete_metadata.sh +0 -0
  32. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/delete/delete_metadata_by_guid.py +0 -0
  33. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/dictionary/deploy_dd.sh +0 -0
  34. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/dictionary/pull_dict.sh +0 -0
  35. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/dictionary/upload_dictionary.py +0 -0
  36. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/indexd/register_indexd.py +0 -0
  37. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/indexd/verify_file_access.py +0 -0
  38. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/k8s_ops/argocd_restart_etl.sh +0 -0
  39. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/k8s_ops/argocd_restart_ms.sh +0 -0
  40. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/k8s_ops/argocd_restart_schema.sh +0 -0
  41. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/k8s_ops/login_to_pod.sh +0 -0
  42. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/k8s_ops/restart_etl_and_ms.sh +0 -0
  43. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/synthetic_data/delete_synth_metadata_sheepdog.py +0 -0
  44. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/synthetic_data/full_deploy_dd_and_synth.sh +0 -0
  45. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/synthetic_data/generate_synth_metadata.sh +0 -0
  46. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/synthetic_data/upload_synth_metadata_sheepdog.py +0 -0
  47. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/upload/metadata/upload_all_studies.sh +0 -0
  48. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/services/upload/metadata/upload_metadata.py +0 -0
  49. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/upload/__init__.py +0 -0
  50. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/upload/metadata_deleter.py +0 -0
  51. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/upload/metadata_submitter.py +0 -0
  52. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/upload/upload_synthdata_s3.py +0 -0
  53. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/utils/athena_utils.py +0 -0
  54. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/utils/dbt_utils.py +0 -0
  55. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/utils/release_writer.py +0 -0
  56. {gen3_dataops_toolkit-3.5.0 → gen3_dataops_toolkit-3.5.1}/src/g3dt/validate/validate.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: gen3-dataops-toolkit
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- Version: 3.5.0
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+ Version: 3.5.1
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  Summary: Gen3 DataOps toolkit (g3dt): operate SSM-published Gen3 data pipeline environments
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  License: Apache-2.0
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  Author: JoshuaHarris391
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "gen3-dataops-toolkit"
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- version = "3.5.0"
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+ version = "3.5.1"
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  description = "Gen3 DataOps toolkit (g3dt): operate SSM-published Gen3 data pipeline environments"
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  authors = ["JoshuaHarris391 <harjo391@gmail.com>"]
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  readme = "README.md"
@@ -428,8 +428,24 @@ def script_env(e: EnvConfig, version: Optional[str] = None) -> Dict[str, str]:
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  scripts compose a URL keeps Python the single source of truth: the scripts
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  read ``G3DT_DICT_URL``/``G3DT_DICT_FILENAME`` and never build either
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  themselves, so there is only one implementation to keep correct.
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+
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+ The interpreter's own bin directory is prepended to PATH: console scripts
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+ installed next to g3dt — gen3-metadata-simulator via
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+ ``g3dt synth install-simulator`` — land there, but a pipx install exposes
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+ only g3dt's own entry points on the caller's PATH, so without this the
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+ wrapped scripts' ``command -v gen3-metadata-simulator`` check fails even
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+ though the tool is installed.
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  """
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+ import sys
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+
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  env = dict(os.environ)
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+ # No .resolve(): a venv's python is a symlink to the base interpreter, and
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+ # resolving it would point at the base install's bin instead of the venv
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+ # bin where console scripts are actually created.
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+ venv_bin = str(Path(sys.executable).parent)
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+ path_entries = env.get("PATH", "").split(os.pathsep)
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+ if venv_bin not in path_entries:
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+ env["PATH"] = venv_bin + os.pathsep + env.get("PATH", "")
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  values = {
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  "G3DT_ENV": e.name,
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  "G3DT_REGION": e.region,