gen3-dataops-toolkit 2.1.0__tar.gz → 2.1.2__tar.gz

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Files changed (54) hide show
  1. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/PKG-INFO +1 -1
  2. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/pyproject.toml +1 -1
  3. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/release_cmds.py +8 -0
  4. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/config.py +3 -1
  5. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/resolver.py +30 -6
  6. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/utils/athena_utils.py +19 -6
  7. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/utils/release_writer.py +11 -2
  8. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/README.md +0 -0
  9. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/__init__.py +0 -0
  10. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/__init__.py +0 -0
  11. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/_internal/__init__.py +0 -0
  12. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/_internal/dispatch.py +0 -0
  13. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/_internal/registry.py +0 -0
  14. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/_internal/resolve.py +0 -0
  15. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/_internal/runner.py +0 -0
  16. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/_internal/safety.py +0 -0
  17. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/config_cmds.py +0 -0
  18. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/delete_cmds.py +0 -0
  19. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/dict_cmds.py +0 -0
  20. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/ec2_cmds.py +0 -0
  21. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/indexd_cmds.py +0 -0
  22. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/jobs.py +0 -0
  23. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/k8s.py +0 -0
  24. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/main.py +0 -0
  25. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/metadata.py +0 -0
  26. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/pipeline_cmds.py +0 -0
  27. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/cli/synth.py +0 -0
  28. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/indexd/__init__.py +0 -0
  29. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/indexd/indexd_registrar.py +0 -0
  30. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/ingest/ingest.py +0 -0
  31. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/delete/delete_all_metadata_for_project.py +0 -0
  32. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/delete/delete_metadata.sh +0 -0
  33. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/delete/delete_metadata_by_guid.py +0 -0
  34. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/dictionary/deploy_dd.sh +0 -0
  35. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/dictionary/pull_dict.sh +0 -0
  36. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/dictionary/upload_dictionary.py +0 -0
  37. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/indexd/register_indexd.py +0 -0
  38. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/k8s_ops/argocd_restart_etl.sh +0 -0
  39. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/k8s_ops/argocd_restart_ms.sh +0 -0
  40. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/k8s_ops/argocd_restart_schema.sh +0 -0
  41. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/k8s_ops/login_to_pod.sh +0 -0
  42. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/k8s_ops/restart_etl_and_ms.sh +0 -0
  43. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/synthetic_data/delete_synth_metadata_sheepdog.py +0 -0
  44. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/synthetic_data/full_deploy_dd_and_synth.sh +0 -0
  45. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/synthetic_data/generate_synth_metadata.sh +0 -0
  46. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/synthetic_data/upload_synth_metadata_sheepdog.py +0 -0
  47. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/upload/metadata/upload_all_studies.sh +0 -0
  48. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/services/upload/metadata/upload_metadata.py +0 -0
  49. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/upload/__init__.py +0 -0
  50. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/upload/metadata_deleter.py +0 -0
  51. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/upload/metadata_submitter.py +0 -0
  52. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/upload/upload_synthdata_s3.py +0 -0
  53. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/utils/dbt_utils.py +0 -0
  54. {gen3_dataops_toolkit-2.1.0 → gen3_dataops_toolkit-2.1.2}/src/g3dt/validate/validate.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: gen3-dataops-toolkit
3
- Version: 2.1.0
3
+ Version: 2.1.2
4
4
  Summary: Gen3 DataOps toolkit (g3dt): operate SSM-published Gen3 data pipeline environments
5
5
  License: Apache-2.0
6
6
  Author: JoshuaHarris391
@@ -1,6 +1,6 @@
1
1
  [tool.poetry]
2
2
  name = "gen3-dataops-toolkit"
3
- version = "2.1.0"
3
+ version = "2.1.2"
4
4
  description = "Gen3 DataOps toolkit (g3dt): operate SSM-published Gen3 data pipeline environments"
5
5
  authors = ["JoshuaHarris391 <harjo391@gmail.com>"]
6
6
  readme = "README.md"
@@ -55,6 +55,12 @@ def write(
55
55
  f"(workgroup output {rc.athena_output_location})",
56
56
  bold=True,
57
57
  )
58
+ # The env's own silver/gold DBs (from SSM) scope the model->DB search:
59
+ # deterministic in shared accounts, no account-wide Glue perms needed.
60
+ search_databases = [
61
+ db for db in (rc.get("glue/db/rawSilver"), rc.get("glue/db/rawGold"))
62
+ if db
63
+ ] or None
58
64
  release_writer.run(
59
65
  dbt_schema_path=dbt_schema_path,
60
66
  release_db=rc.release_db,
@@ -65,6 +71,8 @@ def write(
65
71
  aws_region=rc.region,
66
72
  athena_s3_output=rc.athena_output_location,
67
73
  aws_profile=profile,
74
+ workgroup=rc.athena_workgroup,
75
+ search_databases=search_databases,
68
76
  dry_run=dry_run,
69
77
  )
70
78
  except config.ConfigError as exc:
@@ -336,7 +336,9 @@ def _studies_from_s3_cached(project: str, base_env: str, profile: Optional[str])
336
336
  from g3dt import resolver
337
337
 
338
338
  rc = resolver.resolve(project, base_env, profile=profile)
339
- session = boto3.Session(profile_name=profile) if profile else boto3.Session()
339
+ # Explicit region: botocore ignores AWS_REGION (only AWS_DEFAULT_REGION),
340
+ # so an ambient session on the EC2 box would have no region at all.
341
+ session = boto3.Session(profile_name=profile, region_name=rc.region)
340
342
  try:
341
343
  body = session.client("s3").get_object(
342
344
  Bucket=rc.metadata_bucket, Key=STUDIES_S3_KEY
@@ -127,31 +127,55 @@ class ResolvedConfig:
127
127
  return self.params.get(key, default)
128
128
 
129
129
 
130
+ def _session(profile: Optional[str], region: Optional[str]) -> boto3.Session:
131
+ """A boto3 session with an EXPLICIT region.
132
+
133
+ The region always comes from the marker (file value, or its AWS_REGION
134
+ env-var override) rather than boto3's own chain: botocore only honours
135
+ AWS_DEFAULT_REGION, so on the EC2 job box — where user-data exports
136
+ AWS_REGION and there is no ~/.aws/config — an ambient-chain session has
137
+ no region at all (NoRegionError).
138
+ """
139
+ if region is None:
140
+ from g3dt.config import load_marker # late import (config imports us)
141
+
142
+ region = load_marker()["region"]
143
+ return boto3.Session(profile_name=profile, region_name=region)
144
+
145
+
130
146
  @functools.lru_cache(maxsize=None)
131
- def resolve(project: str, env: str, profile: Optional[str] = None) -> ResolvedConfig:
147
+ def resolve(
148
+ project: str,
149
+ env: str,
150
+ profile: Optional[str] = None,
151
+ region: Optional[str] = None,
152
+ ) -> ResolvedConfig:
132
153
  """Resolve all deployed names for ``project``/``env`` from SSM (cached).
133
154
 
134
- Cached on ``(project, env, profile)`` for the life of the process, so a
135
- single CLI invocation makes exactly one ``get_parameters_by_path``
155
+ Cached on ``(project, env, profile, region)`` for the life of the process,
156
+ so a single CLI invocation makes exactly one ``get_parameters_by_path``
136
157
  round-trip no matter how many commands ask for a name. Call
137
158
  ``resolve.cache_clear()`` in tests.
138
159
 
139
160
  ``profile`` is the local AWS named profile to authenticate the read (e.g.
140
161
  ``etl_test``); ``None`` uses the default credential chain — which is the
141
162
  instance profile on the EC2 job box and the build role in CodeBuild.
163
+ ``region`` defaults to the marker's region.
142
164
  """
143
- session = boto3.Session(profile_name=profile) if profile else boto3.Session()
165
+ session = _session(profile, region)
144
166
  return ResolvedConfig(
145
167
  project=project, env=env, params=_fetch_params(project, env, session=session)
146
168
  )
147
169
 
148
170
 
149
- def list_envs(project: str, profile: Optional[str] = None) -> list:
171
+ def list_envs(
172
+ project: str, profile: Optional[str] = None, region: Optional[str] = None
173
+ ) -> list:
150
174
  """Return the environment names that have an SSM tree under /{project}/.
151
175
 
152
176
  Reads the parameter names one level down (e.g. ``/etl/test/...`` -> ``test``).
153
177
  """
154
- session = boto3.Session(profile_name=profile) if profile else boto3.Session()
178
+ session = _session(profile, region)
155
179
  client = session.client("ssm")
156
180
  paginator = client.get_paginator("get_parameters_by_path")
157
181
  envs = set()
@@ -26,10 +26,14 @@ class AthenaConfig:
26
26
  aws_region (str): AWS region for Athena and S3 operations.
27
27
  aws_profile (str): AWS profile to use for authentication.
28
28
  athena_s3_output (str): S3 location for Athena query output.
29
+ workgroup (str, optional): Athena workgroup to run queries in. Roles on
30
+ the platform are scoped to the env's workgroup, so leaving this
31
+ unset (awswrangler defaults to 'primary') fails under them.
29
32
  """
30
33
  aws_region: str
31
34
  aws_profile: str
32
35
  athena_s3_output: str
36
+ workgroup: Optional[str] = None
33
37
 
34
38
  def as_dict(self) -> Dict[str, Any]:
35
39
  return {
@@ -87,13 +91,16 @@ class AthenaQuery:
87
91
  logger.info(f"Running Athena query: {sql}")
88
92
  boto3_session = self._get_boto_session()
89
93
  try:
90
- df = wr.athena.read_sql_query(
94
+ kwargs = dict(
91
95
  sql=sql,
92
96
  boto3_session=boto3_session,
93
97
  database=athena_database,
94
98
  ctas_approach=ctas_approach,
95
- s3_output=self.config.athena_s3_output
99
+ s3_output=self.config.athena_s3_output,
96
100
  )
101
+ if getattr(self.config, "workgroup", None):
102
+ kwargs["workgroup"] = self.config.workgroup
103
+ df = wr.athena.read_sql_query(**kwargs)
97
104
  logger.info(
98
105
  f"Athena query completed successfully. Returned {len(df)} rows."
99
106
  )
@@ -159,7 +166,7 @@ class AthenaQuery:
159
166
  database=athena_database,
160
167
  table=table_name,
161
168
  boto3_session=boto3_session,
162
- workgroup='primary',
169
+ workgroup=getattr(self.config, "workgroup", None) or 'primary',
163
170
  temp_path=temp_s3_path
164
171
  )
165
172
  logger.info(
@@ -172,7 +179,7 @@ class AthenaQuery:
172
179
  )
173
180
  raise
174
181
 
175
- def find_db_for_model(self, model_name: str) -> Optional[str]:
182
+ def find_db_for_model(self, model_name: str, databases: Optional[list] = None) -> Optional[str]:
176
183
  """
177
184
  Search all Athena databases for a table with the given name and return the database name if found.
178
185
 
@@ -202,8 +209,14 @@ class AthenaQuery:
202
209
  try:
203
210
  # Create a session and pass it to wrangler
204
211
  boto3_session = self._get_boto_session()
205
- databases = wr.catalog.databases(boto3_session=boto3_session)
206
- db_list = databases.get('Database', [])
212
+ if databases:
213
+ # Scoped search (e.g. the env's own silver/gold DBs from SSM):
214
+ # deterministic in shared accounts and needs no account-wide
215
+ # Glue permissions.
216
+ db_list = list(databases)
217
+ else:
218
+ all_dbs = wr.catalog.databases(boto3_session=boto3_session)
219
+ db_list = all_dbs.get('Database', [])
207
220
  for db in db_list:
208
221
  try:
209
222
  # Pass the session to other wrangler calls too
@@ -143,6 +143,10 @@ def parse_args():
143
143
  help="S3 URI for Athena query results (e.g., 's3://athena-results-bucket/').")
144
144
  parser.add_argument("--release-s3-location", type=str, required=True,
145
145
  help="S3 location for the release table (e.g., 's3://<metadata-bucket>/').")
146
+ parser.add_argument("--workgroup", type=str, required=False,
147
+ help="Athena workgroup to run queries in (platform roles are workgroup-scoped).")
148
+ parser.add_argument("--search-database", action="append", default=None,
149
+ help="Restrict the model->database search to this DB (repeatable).")
146
150
  parser.add_argument("--dry-run", action="store_true", default=False,
147
151
  help="Resolve everything and log the SQL; write nothing.")
148
152
  parser.add_argument("-v", "--verbose", action="store_true", default=False,
@@ -161,6 +165,8 @@ def run(
161
165
  aws_region: str,
162
166
  athena_s3_output: str,
163
167
  aws_profile: Optional[str] = None,
168
+ workgroup: Optional[str] = None,
169
+ search_databases: Optional[list] = None,
164
170
  dry_run: bool = False,
165
171
  ) -> None:
166
172
  """Write one release row per dbt model (idempotent; see insert_release_row).
@@ -176,7 +182,8 @@ def run(
176
182
  athena_config = AthenaConfig(
177
183
  aws_region=aws_region,
178
184
  aws_profile=aws_profile,
179
- athena_s3_output=athena_s3_output
185
+ athena_s3_output=athena_s3_output,
186
+ workgroup=workgroup,
180
187
  )
181
188
 
182
189
  dbt_models = get_model_names(dbt_schema_path)
@@ -197,7 +204,7 @@ def run(
197
204
 
198
205
  for model_name in dbt_models:
199
206
  logger.info(f"--- Processing model: {model_name}")
200
- db_name = athena_query.find_db_for_model(model_name)
207
+ db_name = athena_query.find_db_for_model(model_name, databases=search_databases)
201
208
  if not db_name:
202
209
  logger.warning(f"Database not found for model '{model_name}'. Skipping...")
203
210
  continue
@@ -239,6 +246,8 @@ def main():
239
246
  aws_region=args.aws_region,
240
247
  athena_s3_output=args.athena_s3_output,
241
248
  aws_profile=args.aws_profile,
249
+ workgroup=args.workgroup,
250
+ search_databases=args.search_database,
242
251
  dry_run=args.dry_run,
243
252
  )
244
253