gemseo-multi-fidelity 0.0.1__tar.gz

gemseo_multi_fidelity-0.0.1/.copier-answers.yml

@@ -0,0 +1,13 @@
+# Changes here will be overwritten by Copier; NEVER EDIT MANUALLY
+_commit: cd9e6c9
+_src_path: https://gitlab.com/gemseo/dev/copier-gemseo
+author_email: contact@gemseo.org
+author_name: GEMSEO Team
+gemseo_min_version: '6'
+package_is_a_gemseo_plugin: true
+project_is_open_source: true
+project_name: gemseo-multi-fidelity
+project_name_suffix: multifi
+project_slug: gemseo_multi_fidelity
+short_description: A plugin for multi-fidelity MDO
+use_gemseo_develop: true

gemseo_multi_fidelity-0.0.1/.coveragerc

@@ -0,0 +1,7 @@
+[run]
+plugins = covdefaults
+source = gemseo_multi_fidelity
+
+[report]
+# Override covdefaults.
+fail_under = 1

gemseo_multi_fidelity-0.0.1/.gitattributes

@@ -0,0 +1,26 @@
+# Set the default behavior, in case people don't have core.autocrlf set.
+* text=auto
+
+# End of lines are set to UNIX
+* text eol=lf
+
+# Denote all files that are truly binary and should not be modified.
+*.db binary
+*.di binary
+*.dvi binary
+*.gif binary
+*.h5 binary
+*.hdf5 binary
+*.idx binary
+*.jpg binary
+*.npy binary
+*.out binary
+*.pack binary
+*.pdf binary
+*.png binary
+*.pptx binary
+*.xcf binary
+*.xlsm binary
+*.xlsx binary
+*.eot binary
+*.ttf binary

gemseo_multi_fidelity-0.0.1/.gitignore

@@ -0,0 +1,25 @@
+/build
+/dist
+/.tox
+*.pyc
+/src/gemseo_multi_fidelity.egg-info
+
+/.project
+/.pydevproject
+/.settings
+/.idea
+/.vim*
+/.vscode
+/tags
+
+/docs/generated/examples
+/docs/examples/**/*.png
+/site
+
+/htmlcov
+
+/coverage.xml
+/.coverage*
+!/.coveragerc
+
+/.pytest_cache

gemseo_multi_fidelity-0.0.1/.gitlab-ci.yml

@@ -0,0 +1,2 @@
+include:
+  - remote: "https://gitlab.com/gemseo/dev/ci-includes/-/raw/5.1/main.yml"

gemseo_multi_fidelity-0.0.1/.markdownlint.yml

@@ -0,0 +1,18 @@
+# MD013/line-length - Line length
+MD013:
+  # Number of characters for code blocks
+  code_block_line_length: 100
+
+# MD024/no-duplicate-heading/no-duplicate-header - Multiple headings with the same content
+MD024:
+  allow_different_nesting: true
+
+# MD041/first-line-heading/first-line-h1 - First line in a file should be a top-level heading
+MD041: false
+
+# MD046/code-block-style - Code block style
+# Set to false because admonition bugs with it
+MD046: false
+
+# MD052/reference-links-images - Reference links and images should use a label that is defined
+MD052: false

gemseo_multi_fidelity-0.0.1/.pre-commit-config.yaml

@@ -0,0 +1,93 @@
+repos:
+
+- repo: https://github.com/pre-commit/pre-commit-hooks
+  rev: v6.0.0
+  hooks:
+    - id: trailing-whitespace
+    - id: end-of-file-fixer
+      exclude: LICENSES/headers
+    - id: check-yaml
+      # !reference is specific to gitlab
+      # !! prefix is specific to mkdocs
+      exclude: \.gitlab-ci.yml|mkdocs.yml
+    - id: check-added-large-files
+    - id: check-json
+    - id: pretty-format-json
+      args: [
+        --autofix,
+        --no-sort-keys,
+      ]
+      exclude: \.ipynb
+    - id: check-toml
+    - id: destroyed-symlinks
+    - id: check-symlinks
+
+- repo: https://github.com/pre-commit/pygrep-hooks
+  rev: v1.10.0
+  hooks:
+    - id: rst-backticks
+    - id: rst-directive-colons
+    - id: rst-inline-touching-normal
+
+- repo: https://github.com/astral-sh/ruff-pre-commit
+  rev: v0.14.14
+  hooks:
+    - id: ruff-check
+      types_or: [ python, pyi, jupyter ]
+      args: [ --exit-non-zero-on-fix ]
+    - id: ruff-format
+      types_or: [ python, pyi, jupyter ]
+
+- repo: https://github.com/commitizen-tools/commitizen
+  rev: v4.12.1
+  hooks:
+    - id: commitizen
+      stages: [commit-msg]
+
+- repo: https://github.com/kynan/nbstripout
+  rev: 0.9.0
+  hooks:
+    - id: nbstripout
+
+- repo: https://github.com/igorshubovych/markdownlint-cli
+  rev: v0.47.0
+  hooks:
+  - id: markdownlint
+    args: [
+      --fix,
+      --disable,
+      MD024,
+      ]
+
+- repo: https://github.com/Lucas-C/pre-commit-hooks
+  rev: v1.5.6
+  hooks:
+    - id: insert-license
+      name: insert LGPL license
+      exclude: ^docs
+      files: \.py$
+      args:
+        - --license-filepath
+        - LICENSES/headers/LGPL-3.0.txt
+    - id: insert-license
+      name: insert BSD license
+      files: ^docs/(examples|tutorials).*\.py$
+      args:
+        - --license-filepath
+        - LICENSES/headers/BSD-0-Clause.txt
+    - id: insert-license
+      name: insert CC BY-SA license for rst files
+      files: \.rst$
+      args:
+        - --license-filepath
+        - LICENSES/headers/CC-BY-SA-4.0.txt
+        - --comment-style
+        - ..|   |
+    - id: insert-license
+      name: insert CC BY-SA license for md files
+      files: \.md$
+      args:
+        - --license-filepath
+        - LICENSES/headers/CC-BY-SA-4.0.txt
+        - --comment-style
+        - <!--||-->

gemseo_multi_fidelity-0.0.1/.pytest.ini

@@ -0,0 +1,9 @@
+[pytest]
+# Show extra info on xfailed, xpassed, and skipped tests.
+addopts = --disable-pytest-warnings -rxs
+testpaths = tests
+# These logging settings identical to the defaults of gemseo.configure_logger().
+log_file_level = INFO
+log_file_date_format = %H:%M:%S
+log_file_format = %(levelname)8s - %(asctime)s: %(message)s
+# filterwarnings = ignore::pytest.PytestExperimentalApiWarning

gemseo_multi_fidelity-0.0.1/.ruff.toml

@@ -0,0 +1,157 @@
+fix = true
+unsafe-fixes = true
+preview = true
+target-version = "py310"
+src = ["src"]
+
+[lint]
+future-annotations = true
+task-tags = ["TODO"]
+ignore = [
+    # Shadowing a Python builtin module.
+    "A005",
+    # Dynamically typed expressions (typing.Any) are disallowed.
+    "ANN401",
+    # Checks for undocumented magic method definitions.
+    "D105",
+    # Missing argument description in the docstring.
+    "D417",
+    # Conflicts with ruff format.
+    "E203",
+    # Avoid unexpected behavior with the formatter.
+    "ISC001",
+    # Too many arguments in function definition.
+    "PLR0913",
+    # `subprocess.run` without explicit `check` argument.
+    "PLR2004",
+    # Too many public methods.
+    "PLR0904",
+    # Too many branches.
+    "PLR0912",
+    # Too many statements.
+    "PLR0915",
+    # Too many return statements.
+    "PLR0911",
+    # `for` loop variable `name` overwritten by assignment target.
+    "PLW1510",
+    # Magic value used in comparison.
+    "PLW2901",
+    # Bad or misspelled dunder method name `_repr_html_`.
+    "PLW3201",
+    # Object does not implement `__hash__` method.
+    "PLW1641",
+    # `__init__` module should only contain docstrings and re-exports.
+    "RUF067",
+    # Checks for noqa directives that are no longer applicable.
+    "RUF100",
+    # Checks for long exception messages that are not defined in the exception class itself.
+    "TRY003",
+]
+
+select = [
+    "A",
+#    "ANN",
+    "ASYNC",
+    "B",
+    "BLE",
+#    "C",
+    "C4",
+    "D",
+#    "DOC",
+    "E",
+    "EM",
+    "F",
+#    "FA",
+#    "FBT",
+    "FLY",
+    "FURB",
+    "G",
+    "I",
+    "ISC",
+    "INP",
+    "LOG",
+    "Q",
+    "N",
+    "NPY",
+#    "PL",
+#    "PD",
+    "PT",
+    "PIE",
+    "PGH",
+    "PTH",
+    "PYI",
+    "PERF",
+    "RET",
+    "RSE",
+    "RUF",
+#    "S",
+    "SIM",
+#    "SLF",
+    "SLOT",
+    "T",
+    "T10",
+    "T20",
+    "TCH",
+    "TRY",
+    "W",
+    "UP",
+    "YTT",
+]
+
+[lint.flake8-type-checking]
+runtime-evaluated-base-classes = [
+    "pydantic.BaseModel",
+    "pydantic_settings.BaseSettings",
+    "gemseo.algos.doe.base_doe_settings.BaseDOESettings",
+    "gemseo.settings.base_settings.BaseSettings",
+    "gemseo.algos.linear_solvers.base_linear_solver_settings.BaseLinearSolverSettings",
+    "gemseo.algos.opt.base_optimizer_settings.BaseOptimizerSettings",
+    "gemseo.algos.opt.nlopt.settings.base_nlopt_settings.BaseNLoptSettings",
+    "gemseo.algos.opt.nlopt.settings.base_gradient_free_nlopt_settings.BaseGradientFreeNLoptSettings",
+    "gemseo.mlearning.classification.algos.base_classifier_settings.BaseClassifierSettings",
+    "gemseo.algos.base_driver_settings.BaseDriverSettings",
+    "gemseo.mda.base_mda_solver_settings.BaseMDASolverSettings",
+    "gemseo.mlearning.core.algos.unsupervised_settings.BaseMLUnsupervisedAlgoSettings",
+    "gemseo.mlearning.regression.algos.base_regressor_settings.BaseRegressorSettings",
+    "gemseo.mlearning.regression.algos.linreg_settings.LinearRegressor_Settings",
+    "gemseo.post.base_post_settings.BasePostSettings",
+    "gemseo.uncertainty.distributions.base_distribution_settings.BaseDistributionSettings",
+    "gemseo.uncertainty.distributions.base_settings.weibull_settings.BaseWeibullDistributionSettings",
+    "gemseo.algos.doe.pydoe.settings.base_pydoe_settings.BasePyDOESettings",
+    "gemseo.algos.doe.openturns.settings.base_openturns_settings.BaseOpenTURNSSettings",
+    "gemseo.algos.doe.scipy.settings.base_scipy_doe_settings.BaseSciPyDOESettings",
+    "gemseo.algos.opt.scipy_global.settings.base_scipy_global_settings.BaseSciPyGlobalSettings",
+    "gemseo.formulations.base_formulation_settings.BaseFormulationSettings",
+    "gemseo.mlearning.linear_model_fitting.base_linear_model_fitter_settings.BaseLinearModelFitterSettings",
+    "gemseo.mlearning.regression.algos.base_fce_settings.BaseFCERegressorSettings",
+    "gemseo.algos.opt.augmented_lagrangian.settings.base.BaseAugmentedLagrangianSettings",
+    "gemseo.algos.opt.base_milp_settings.BaseMILPSettings",
+    "gemseo.algos.opt.base_gradient_based_algorithm_settings.BaseGradientBasedAlgorithmSettings",
+    "gemseo.algos.opt.scipy_milp.settings.scipy_milp_settings.SciPyMILP_Settings",
+]
+
+[lint.isort]
+force-single-line = true
+required-imports = ["from __future__ import annotations"]
+
+[lint.pydocstyle]
+convention = "google"
+
+[lint.per-file-ignores]
+"*.ipynb" = ["RET504"]
+"tests/*.py" = ["D", "PT009", "PT011", "PT027", "PTH"]
+"docs/*.py" = [
+  "T",
+  "D",
+  "B018",
+  "PTH",
+  "E501",
+  "PERF",
+  "A001",
+  "RET504",
+  "INP001",
+]
+
+[format]
+docstring-code-format = true
+docstring-code-line-length = 75

gemseo_multi_fidelity-0.0.1/CHANGELOG.md

@@ -0,0 +1,31 @@
+<!--
+Copyright 2021 IRT Saint Exupéry, https://www.irt-saintexupery.com
+
+This work is licensed under the Creative Commons Attribution-ShareAlike 4.0
+International License. To view a copy of this license, visit
+http://creativecommons.org/licenses/by-sa/4.0/ or send a letter to Creative
+Commons, PO Box 1866, Mountain View, CA 94042, USA.
+-->
+
+<!--
+Changelog titles are:
+- Added: for new features.
+- Changed: for changes in existing functionality.
+- Deprecated: for soon-to-be removed features.
+- Removed: for now removed features.
+- Fixed: for any bug fixes.
+- Security: in case of vulnerabilities.
+-->
+
+# Changelog
+
+All notable changes of this project will be documented here.
+
+The format is based on
+[Keep a Changelog](https://keepachangelog.com/en/1.0.0)
+and this project adheres to
+[Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+
+## Version 0.0.1 (January 2026)
+
+First version.

gemseo_multi_fidelity-0.0.1/LICENSE.txt

@@ -0,0 +1,165 @@
+                   GNU LESSER GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+
+  This version of the GNU Lesser General Public License incorporates
+the terms and conditions of version 3 of the GNU General Public
+License, supplemented by the additional permissions listed below.
+
+  0. Additional Definitions.
+
+  As used herein, "this License" refers to version 3 of the GNU Lesser
+General Public License, and the "GNU GPL" refers to version 3 of the GNU
+General Public License.
+
+  "The Library" refers to a covered work governed by this License,
+other than an Application or a Combined Work as defined below.
+
+  An "Application" is any work that makes use of an interface provided
+by the Library, but which is not otherwise based on the Library.
+Defining a subclass of a class defined by the Library is deemed a mode
+of using an interface provided by the Library.
+
+  A "Combined Work" is a work produced by combining or linking an
+Application with the Library.  The particular version of the Library
+with which the Combined Work was made is also called the "Linked
+Version".
+
+  The "Minimal Corresponding Source" for a Combined Work means the
+Corresponding Source for the Combined Work, excluding any source code
+for portions of the Combined Work that, considered in isolation, are
+based on the Application, and not on the Linked Version.
+
+  The "Corresponding Application Code" for a Combined Work means the
+object code and/or source code for the Application, including any data
+and utility programs needed for reproducing the Combined Work from the
+Application, but excluding the System Libraries of the Combined Work.
+
+  1. Exception to Section 3 of the GNU GPL.
+
+  You may convey a covered work under sections 3 and 4 of this License
+without being bound by section 3 of the GNU GPL.
+
+  2. Conveying Modified Versions.
+
+  If you modify a copy of the Library, and, in your modifications, a
+facility refers to a function or data to be supplied by an Application
+that uses the facility (other than as an argument passed when the
+facility is invoked), then you may convey a copy of the modified
+version:
+
+   a) under this License, provided that you make a good faith effort to
+   ensure that, in the event an Application does not supply the
+   function or data, the facility still operates, and performs
+   whatever part of its purpose remains meaningful, or
+
+   b) under the GNU GPL, with none of the additional permissions of
+   this License applicable to that copy.
+
+  3. Object Code Incorporating Material from Library Header Files.
+
+  The object code form of an Application may incorporate material from
+a header file that is part of the Library.  You may convey such object
+code under terms of your choice, provided that, if the incorporated
+material is not limited to numerical parameters, data structure
+layouts and accessors, or small macros, inline functions and templates
+(ten or fewer lines in length), you do both of the following:
+
+   a) Give prominent notice with each copy of the object code that the
+   Library is used in it and that the Library and its use are
+   covered by this License.
+
+   b) Accompany the object code with a copy of the GNU GPL and this license
+   document.
+
+  4. Combined Works.
+
+  You may convey a Combined Work under terms of your choice that,
+taken together, effectively do not restrict modification of the
+portions of the Library contained in the Combined Work and reverse
+engineering for debugging such modifications, if you also do each of
+the following:
+
+   a) Give prominent notice with each copy of the Combined Work that
+   the Library is used in it and that the Library and its use are
+   covered by this License.
+
+   b) Accompany the Combined Work with a copy of the GNU GPL and this license
+   document.
+
+   c) For a Combined Work that displays copyright notices during
+   execution, include the copyright notice for the Library among
+   these notices, as well as a reference directing the user to the
+   copies of the GNU GPL and this license document.
+
+   d) Do one of the following:
+
+       0) Convey the Minimal Corresponding Source under the terms of this
+       License, and the Corresponding Application Code in a form
+       suitable for, and under terms that permit, the user to
+       recombine or relink the Application with a modified version of
+       the Linked Version to produce a modified Combined Work, in the
+       manner specified by section 6 of the GNU GPL for conveying
+       Corresponding Source.
+
+       1) Use a suitable shared library mechanism for linking with the
+       Library.  A suitable mechanism is one that (a) uses at run time
+       a copy of the Library already present on the user's computer
+       system, and (b) will operate properly with a modified version
+       of the Library that is interface-compatible with the Linked
+       Version.
+
+   e) Provide Installation Information, but only if you would otherwise
+   be required to provide such information under section 6 of the
+   GNU GPL, and only to the extent that such information is
+   necessary to install and execute a modified version of the
+   Combined Work produced by recombining or relinking the
+   Application with a modified version of the Linked Version. (If
+   you use option 4d0, the Installation Information must accompany
+   the Minimal Corresponding Source and Corresponding Application
+   Code. If you use option 4d1, you must provide the Installation
+   Information in the manner specified by section 6 of the GNU GPL
+   for conveying Corresponding Source.)
+
+  5. Combined Libraries.
+
+  You may place library facilities that are a work based on the
+Library side by side in a single library together with other library
+facilities that are not Applications and are not covered by this
+License, and convey such a combined library under terms of your
+choice, if you do both of the following:
+
+   a) Accompany the combined library with a copy of the same work based
+   on the Library, uncombined with any other library facilities,
+   conveyed under the terms of this License.
+
+   b) Give prominent notice with the combined library that part of it
+   is a work based on the Library, and explaining where to find the
+   accompanying uncombined form of the same work.
+
+  6. Revised Versions of the GNU Lesser General Public License.
+
+  The Free Software Foundation may publish revised and/or new versions
+of the GNU Lesser General Public License from time to time. Such new
+versions will be similar in spirit to the present version, but may
+differ in detail to address new problems or concerns.
+
+  Each version is given a distinguishing version number. If the
+Library as you received it specifies that a certain numbered version
+of the GNU Lesser General Public License "or any later version"
+applies to it, you have the option of following the terms and
+conditions either of that published version or of any later version
+published by the Free Software Foundation. If the Library as you
+received it does not specify a version number of the GNU Lesser
+General Public License, you may choose any version of the GNU Lesser
+General Public License ever published by the Free Software Foundation.
+
+  If the Library as you received it specifies that a proxy can decide
+whether future versions of the GNU Lesser General Public License shall
+apply, that proxy's public statement of acceptance of any version is
+permanent authorization for you to choose that version for the
+Library.