gemlib 0.9.2__tar.gz → 0.9.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (74) hide show
  1. {gemlib-0.9.2 → gemlib-0.9.3}/PKG-INFO +6 -3
  2. {gemlib-0.9.2 → gemlib-0.9.3}/pyproject.toml +6 -2
  3. {gemlib-0.9.2 → gemlib-0.9.3}/LICENSE +0 -0
  4. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/__init__.py +0 -0
  5. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/__init__.py +0 -0
  6. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/brownian.py +0 -0
  7. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/categorical2.py +0 -0
  8. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/continuous_markov.py +0 -0
  9. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/continuous_time_state_transition_model.py +0 -0
  10. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/continuous_time_state_transition_model_test.py +0 -0
  11. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/discrete_markov.py +0 -0
  12. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/discrete_rejection_sampling.py +0 -0
  13. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/discrete_time_state_transition_model.py +0 -0
  14. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/discrete_time_state_transition_model_examples.py +0 -0
  15. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/discrete_time_state_transition_model_test.py +0 -0
  16. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/experimental/__init__.py +0 -0
  17. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/experimental/discrete_approx_cont_state_transition_model.py +0 -0
  18. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/experimental/state_transition_marginal_model.py +0 -0
  19. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/hypergeometric.py +0 -0
  20. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/hypergeometric_sampler.py +0 -0
  21. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/hypergeometric_test.py +0 -0
  22. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/kcategorical.py +0 -0
  23. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/kcategorical_test.py +0 -0
  24. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/uniform_integer.py +0 -0
  25. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/distributions/uniform_integer_test.py +0 -0
  26. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/__init__.py +0 -0
  27. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/adaptive_random_walk_metropolis.py +0 -0
  28. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/adaptive_random_walk_metropolis_test.py +0 -0
  29. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/bb_fixture.pkl +0 -0
  30. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/brownian_bridge_kernel.py +0 -0
  31. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/brownian_bridge_kernel_test.py +0 -0
  32. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/chain_binomial_rippler.py +0 -0
  33. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/chain_binomial_rippler_test.py +0 -0
  34. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/compound_kernel.py +0 -0
  35. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/conftest.py +0 -0
  36. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/damped_chain_binomial_rippler.py +0 -0
  37. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/discrete_time_state_transition_model/__init__.py +0 -0
  38. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/discrete_time_state_transition_model/event_time_proposal.py +0 -0
  39. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/discrete_time_state_transition_model/fixtures.py +0 -0
  40. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_mh.py +0 -0
  41. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_mh_test.py +0 -0
  42. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py +0 -0
  43. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal_test.py +0 -0
  44. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/discrete_time_state_transition_model/move_events.py +0 -0
  45. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/discrete_time_state_transition_model/move_events_test.py +0 -0
  46. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_mh.py +0 -0
  47. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_mh_test.py +0 -0
  48. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_proposal.py +0 -0
  49. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/discrete_time_state_transition_model/util.py +0 -0
  50. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/__init__.py +0 -0
  51. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/composable_kernel.py +0 -0
  52. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/discrete_time_state_transition_model/__init__.py +0 -0
  53. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/discrete_time_state_transition_model/left_censored_events_mh.py +0 -0
  54. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/discrete_time_state_transition_model/move_events.py +0 -0
  55. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/discrete_time_state_transition_model/move_events_test.py +0 -0
  56. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/discrete_time_state_transition_model/right_censored_events_mh.py +0 -0
  57. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/discrete_time_state_transition_model/right_censored_events_mh_test.py +0 -0
  58. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/hmc.py +0 -0
  59. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/hmc_test.py +0 -0
  60. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/mcmc_base.py +0 -0
  61. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/mcmc_sampler.py +0 -0
  62. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/mcmc_sampler_test.py +0 -0
  63. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/multi_scan.py +0 -0
  64. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/multi_scan_test.py +0 -0
  65. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/random_walk_metropolis.py +0 -0
  66. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/random_walk_metropolis_test.py +0 -0
  67. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/experimental/test_util.py +0 -0
  68. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/gibbs_kernel.py +0 -0
  69. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/gibbs_kernel_test.py +0 -0
  70. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/h5_posterior.py +0 -0
  71. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/multi_scan_kernel.py +0 -0
  72. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/zarr_posterior.py +0 -0
  73. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/util.py +0 -0
  74. {gemlib-0.9.2 → gemlib-0.9.3}/gemlib/util_test.py +0 -0
{gemlib-0.9.2 → gemlib-0.9.3}/PKG-INFO RENAMED
@@ -1,10 +1,13 @@
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  Metadata-Version: 2.1
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  Name: gemlib
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- Version: 0.9.2
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+ Version: 0.9.3
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  Summary: GEMlib scientific compute library for epidemic modelling
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- Home-page: http://fhm-chicas-code.lancs.ac.uk/GEM/gemlib
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+ Home-page: https://gem-epidemics.gitlab.io/gemlib
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+ Keywords: epidemic,Bayesian,inference,infectious disease model,probabilistic programming
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  Author: Chris Jewell
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  Author-email: c.jewell@lancaster.ac.uk
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+ Maintainer: Jessica Bridgen
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+ Maintainer-email: j.bridgen@lancaster.ac.uk
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  Requires-Python: >=3.9.0,<3.12.0
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  Classifier: Programming Language :: Python :: 3
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  Classifier: Programming Language :: Python :: 3.9
@@ -16,4 +19,4 @@ Requires-Dist: tensorflow (>=2.15.0,<2.16.0) ; sys_platform == "linux"
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  Requires-Dist: tensorflow-cpu (>=2.15.0,<2.16.0) ; sys_platform == "darwin"
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  Requires-Dist: tensorflow-intel (>=2.15.0,<2.16.0) ; sys_platform == "win32"
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  Requires-Dist: tensorflow-probability (>=0.23.0,<0.24.0)
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- Project-URL: Repository, http://fhm-chicas-code.lancs.ac.uk/GEM/gemlib
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+ Project-URL: Repository, https://gitlab.com/gem-epidemics/gemlib
{gemlib-0.9.2 → gemlib-0.9.3}/pyproject.toml RENAMED
@@ -1,10 +1,14 @@
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  [tool.poetry]
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  name = "gemlib"
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- version = "0.9.2"
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+ version = "0.9.3"
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  description = "GEMlib scientific compute library for epidemic modelling"
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  authors = ["Chris Jewell <c.jewell@lancaster.ac.uk>",
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  "Alison Hale <haleac@lancaster.ac.uk>"]
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- repository = "http://fhm-chicas-code.lancs.ac.uk/GEM/gemlib"
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+ maintainers = ["Jessica Bridgen <j.bridgen@lancaster.ac.uk>",
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+ "Alin Morariu <a.morariu@lancaster.ac.uk"]
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+ repository = "https://gitlab.com/gem-epidemics/gemlib"
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+ homepage = "https://gem-epidemics.gitlab.io/gemlib"
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+ keywords = ["epidemic", "Bayesian", "inference", "infectious disease model", "probabilistic programming"]
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  [tool.poetry.dependencies]
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  python = ">=3.9.0, <3.12.0"
{gemlib-0.9.2 → gemlib-0.9.3}/LICENSE RENAMED
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{gemlib-0.9.2 → gemlib-0.9.3}/gemlib/__init__.py RENAMED
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{gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/__init__.py RENAMED
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{gemlib-0.9.2 → gemlib-0.9.3}/gemlib/mcmc/conftest.py RENAMED
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{gemlib-0.9.2 → gemlib-0.9.3}/gemlib/util.py RENAMED
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{gemlib-0.9.2 → gemlib-0.9.3}/gemlib/util_test.py RENAMED
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