garib 0.0.1__tar.gz

garib-0.0.1/GARIB/garib.py

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+import numpy as np
+import astropy.units as u
+from astropy.coordinates import SkyCoord, EarthLocation, AltAz
+import healpy as hp
+import h5py
+from scipy.interpolate import RegularGridInterpolator
+from astropy.time import Time
+from astropy.time import Time, TimeDelta
+
+
+phi_res   = 1.0
+theta_res = 1.0
+theta_array = np.arange(-90, 90 + theta_res, theta_res)
+theta_array = np.round(theta_array, 2) 
+phi_array = np.arange(0, 360, phi_res)
+
+
+def find_nearest(array, value):
+    array = np.asarray(array)
+    idx = (np.abs(array - value)).argmin()
+    return array[idx]
+
+
+def inside_rectangle_np(points, rect_bottom_left, rect_top_right, include_boundary=True):
+    x1, y1 = rect_bottom_left
+    x2, y2 = rect_top_right
+    xmin, xmax = min(x1, x2), max(x1, x2)
+    ymin, ymax = min(y1, y2), max(y1, y2)
+
+    px, py = points[:, 0], points[:, 1]
+    if include_boundary:
+        mask = (xmin <= px) & (px <= xmax) & (ymin <= py) & (py <= ymax)
+    else:
+        mask = (xmin < px) & (px < xmax) & (ymin < py) & (py < ymax)
+    return mask
+
+
+class GalaxyElimination(object):
+    def __init__(self, **kwargs):
+
+        for key, value in kwargs.items():
+            setattr(self, key, value)
+
+        self.read_beam()      
+        self.coordinate_generation()
+        self.set_location()
+        self.fixed_radius()
+
+
+
+    def read_beam(self):
+        """ Reading the beam-file:
+        
+        Reads the .h5 file provided
+
+        Args:
+        file (.h5)               : An output file of the beam convolved with sky
+        nside (int)              : Resolution of the sky-map 
+        chosen_frequency (float) : Frequency for the beam
+        
+        
+        Returns:
+        beam_val (func)    : Interpolated beam function
+        frequency (array)  : Reads frequency from the file
+        lst (array)        : Reads LST from the file
+        tsky (2D array)    : 2D array of number of pixels and frequencies
+        
+        """
+
+        f = h5py.File(self.file, 'r')
+        beam_3D = f['ancillary_prod']['beam'][()]
+        freq = f['index_map']['frequency'][()]
+        LST = f['index_map']['LST'][()]
+        chosen_freq_idx = np.where(freq==self.chosen_frequency)[0][0]
+        beam_val = RegularGridInterpolator((theta_array, phi_array), beam_3D[chosen_freq_idx])
+        npix = hp.nside2npix(self.nside)
+        tsky = np.zeros((npix, len(freq)))
+        dt = TimeDelta(np.linspace(0.,24.*3600, 500), format='sec') 
+        obstimes = Time('2019-4-12 23:00:00')  + dt
+
+        self.beam_val = beam_val
+        self.frequency = freq
+        self.lst = LST
+        self.tsky = tsky
+        self.time = obstimes
+
+    def coordinate_generation(self): 
+        """ Generation of galactic coordinates for a given resolution
+        
+        Args:
+        nside (int)              : Resolution of the sky-map 
+        
+        
+        Returns:
+
+        l-coordinate (array): Galactic longitude
+        b-coordinate (array): Galactic latitude
+        
+        """
+        npix = hp.nside2npix(self.nside)
+        pixels = np.arange(npix)
+        theta, phi = hp.pix2ang(self.nside, pixels, nest=True)
+
+        ll_coordinate = phi
+        bb_coordinate = np.pi/2. - theta
+
+        self.ll_coordinate = ll_coordinate
+        self.bb_coordinate = bb_coordinate
+
+
+    def set_location(self):
+        """Choosing location on Earth
+
+        Args:
+        site latitude [degrees] (float)  : Latitude of site location
+        site longitude [degrees] (float) : Longitude of site location
+        height [meters] (float)          : Elevation above the sea level
+        
+        ll_coordinate [degrees]  : latitude co-ordinate array for the healpy map
+        bb_coordinate [degrees]  : longitude co-ordinate array for the healpy map
+
+        Returns
+        location : Location information for the particular location on Earth
+        gc : Galactic coordinates for the galactic map
+        
+        """
+        location = EarthLocation(lat=self.site_latitude*u.deg, lon=self.site_longitude*u.deg, height=self.elevation*u.m)
+        gc       = SkyCoord(l=self.ll_coordinate*u.radian, b=self.bb_coordinate*u.radian,\
+                    frame='galactic')
+        self.gc  = gc
+        self.location = location
+
+
+
+    def fixed_radius(self):
+        """ Fixing radius of the beam
+
+        Computes the radius of the beam for an observation time where the beam lies near the center of the galactic plane
+
+        """
+        trans_local             = self.gc.transform_to(AltAz(obstime=self.time[int(len(self.lst)/2)], location=self.location))
+        az, alt                 = trans_local.az.degree, trans_local.alt.degree
+        beam_gen = np.zeros_like(self.tsky)
+
+        rogue_phi  = []
+
+        for iangle, (alt_value, az_value) in enumerate(zip(alt,az)):
+            if az_value > phi_array.max():
+                rogue_phi.append(az_value)
+                az_value = 360 - az_value
+            beam_gen[iangle,0] = self.beam_val([alt_value, az_value])[0]
+
+        hf_bm = find_nearest(beam_gen[:,0], 0.5)
+        idx_hf = np.where(beam_gen[:,0] == hf_bm)
+
+        idx = np.where(beam_gen[:,0] == max(beam_gen[:,0]))
+        theta_c, phi_c = hp.pix2ang(self.nside, idx[0][0], nest=True)
+
+        theta_hf, phi_hf = hp.pix2ang(self.nside, idx_hf[0][0], nest=True)
+
+        vec_c  = hp.ang2vec(theta_c, phi_c)
+        vec_hf = hp.ang2vec(theta_hf, phi_hf)
+        radius = np.arccos(np.clip(np.dot(vec_c, vec_hf), -1.0, 1.0))
+        
+        self.radius = radius
+    
+
+    def time_elimination(self):
+        """
+        Elimination of observation times with Galaxy
+
+        This function eliminates the times of observations where the beam crosses the galaxy.
+        
+        Args:
+        Obstimes (list) : Times of observation
+        
+        
+        """
+        masked_timestamps = []
+        good_timestamps   = []
+        for ii in range(len(self.time)):
+            trans_local = self.gc.transform_to(AltAz(obstime=self.time[ii], location=self.location))
+            az, alt     = trans_local.az.degree, trans_local.alt.degree
+            ind_below_horizon       = alt < 0
+            beam_gen = np.zeros_like(self.tsky)
+
+            rogue_phi  = []
+
+            for iangle, (alt_value, az_value) in enumerate(zip(alt,az)):
+                if az_value > phi_array.max():
+                    rogue_phi.append(az_value)
+                    az_value = 360 - az_value
+                beam_gen[iangle,0] = self.beam_val([alt_value, az_value])[0]
+
+            hf_bm = find_nearest(beam_gen[:,0], 0.5)
+            idx_hf = np.where(beam_gen[:,0] == hf_bm)
+
+            idx = np.where(beam_gen[:,0] == max(beam_gen[:,0]))
+            theta_c, phi_c = hp.pix2ang(self.nside, idx[0][0], nest=True)
+            
+            radius = self.radius
+            npts = 1000
+            phi = np.linspace(0, 2*np.pi, npts)
+
+            theta_ring = np.arccos(np.cos(radius) * np.cos(theta_c) +
+                                np.sin(radius) * np.sin(theta_c) * np.cos(phi))
+            phi_ring = phi_c + np.arctan2(np.sin(phi) * np.sin(radius) * np.sin(theta_c),
+                                        np.cos(radius) - np.cos(theta_ring) * np.cos(theta_c))
+
+            lon = np.degrees(phi_ring) 
+            lat = 90 - np.degrees(theta_ring)
+
+            l = self.l
+            b = self.b
+
+            rbl = (-l,-b)
+            rtr = (+l,+b)
+
+            lb = np.stack((lon,lat), axis=1)
+
+
+            if inside_rectangle_np((lb), rbl, rtr).any() == True:
+                observing_time = Time(self.time[ii], scale='utc', location=self.location)
+                LST            = observing_time.sidereal_time('mean').value 
+                masked_timestamps.append(LST)
+
+            else:
+                observing_time = Time(self.time[ii], scale='utc', location=self.location)
+                LST            = observing_time.sidereal_time('mean').value 
+                good_timestamps.append(LST)
+            
+            msk_tstps = np.array(masked_timestamps)      # Has Galaxy Coverage
+            gd_tstps  = np.array(good_timestamps)        # Galaxy is eliminated
+
+        return np.savetxt('badtimes.txt', msk_tstps)
+

garib-0.0.1/GARIB/h5py_file_open.py

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+import h5py
+import matplotlib.pyplot as plt
+import numpy as np
+from matplotlib import cm, ticker
+
+f = h5py.File('SINESQ_500times_EARTH_jun26.h5','r')
+
+LST = f['index_map']['LST'][()]
+freq = f['index_map']['frequency'][()]
+ind_sorted = np.argsort(LST)
+lst = LST[ind_sorted]
+
+T = f['T_A'][()][ind_sorted,:]
+T = np.log10(T)
+
+gd_times = np.loadtxt('badtimes.txt')
+index = []
+for i in range(len(gd_times)):
+    ind = np.where(gd_times[i] == lst)[0][0]
+    index.append(ind)
+
+ind_arr = np.array(index)
+
+T[ind_arr,:] = np.nan
+
+#### Create meshgrid of frequencies and LST value
+plt.figure(figsize=(10,6))
+freq_mesh1, lst_mesh1 = np.meshgrid(freq, lst)
+
+plt.imshow(T, extent=(freq[0], freq[-1], lst[0], lst[-1]), aspect='auto', origin='lower',
+           interpolation='none', cmap='viridis', vmin=np.nanmin(T), vmax=np.nanmax(T))
+
+plt.xlabel('Frequency (MHz)', fontsize=15)
+plt.ylabel('LST (hours)', fontsize=15)
+plt.xticks(fontsize=13)
+plt.yticks(fontsize=13)
+cbar = plt.colorbar()
+cbar.ax.tick_params(labelsize=12)

garib-0.0.1/GARIB/testing.py

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+import numpy as np
+import astropy.units as u
+from astropy.coordinates import SkyCoord, EarthLocation, AltAz
+import healpy as hp
+import h5py
+from scipy.interpolate import RegularGridInterpolator
+from astropy.time import Time, TimeDelta
+from garib import GalaxyElimination
+
+file = "SINESQ_500times_EARTH_jun26.h5"
+
+SITE_LATITUDE       = 32.81444444 #/* +32.77944444   deg for Hanle */ 
+SITE_LONGITUDE      = 78.85555556 #/* 78.96416667 deg for Hanle */
+ELEVATION           = 4500
+
+dt = TimeDelta(np.linspace(0.,24.*3600, 500), format='sec') #Will NOT take ~5 min
+obstimes = Time('2019-4-12 23:00:00')  + dt
+
+chosen_frequency = 65
+nside = 16
+lmax  = 45
+bmax  = 10
+
+param_obs = {'file': file,\
+            'chosen_frequency': chosen_frequency,\
+            'site_latitude': SITE_LATITUDE,\
+            'site_longitude': SITE_LONGITUDE,\
+            'elevation': ELEVATION,\
+            'nside': nside,\
+            'l':lmax,\
+            'b':bmax}
+
+# Galaxy Avoidance for RadIo antenna Beams: GARIB
+
+GE = GalaxyElimination(**param_obs)
+GE.time_elimination()

garib-0.0.1/PKG-INFO

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+Metadata-Version: 2.4
+Name: garib
+Version: 0.0.1
+Summary: This packages eliminates the observation times when the beam of the radio antenna crosses the a rectangular region in the sky.
+Author-email: "Abhijeet S. Patil" <abhijeet@rrimail.rri.res.in>, "Sanjaya K. Chihnara" <sanjayakumar@rrimail.rri.res.in>
+License: RRI
+Requires-Python: >=3.11.8
+Requires-Dist: numpy
+Requires-Dist: astropy
+Requires-Dist: healpy
+Requires-Dist: scipy
+Requires-Dist: h5py

garib-0.0.1/garib.egg-info/PKG-INFO

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+Metadata-Version: 2.4
+Name: garib
+Version: 0.0.1
+Summary: This packages eliminates the observation times when the beam of the radio antenna crosses the a rectangular region in the sky.
+Author-email: "Abhijeet S. Patil" <abhijeet@rrimail.rri.res.in>, "Sanjaya K. Chihnara" <sanjayakumar@rrimail.rri.res.in>
+License: RRI
+Requires-Python: >=3.11.8
+Requires-Dist: numpy
+Requires-Dist: astropy
+Requires-Dist: healpy
+Requires-Dist: scipy
+Requires-Dist: h5py

garib-0.0.1/garib.egg-info/SOURCES.txt

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+README.md
+pyproject.toml
+GARIB/__init__.py
+GARIB/garib.py
+GARIB/h5py_file_open.py
+GARIB/testing.py
+garib.egg-info/PKG-INFO
+garib.egg-info/SOURCES.txt
+garib.egg-info/dependency_links.txt
+garib.egg-info/requires.txt
+garib.egg-info/top_level.txt

garib-0.0.1/garib.egg-info/dependency_links.txt

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+

garib-0.0.1/garib.egg-info/requires.txt

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+numpy
+astropy
+healpy
+scipy
+h5py

garib-0.0.1/garib.egg-info/top_level.txt

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+GARIB

garib-0.0.1/pyproject.toml

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+[project]
+name = "garib"
+version = "0.0.1"
+
+description = "This packages eliminates the observation times when the beam of the radio antenna crosses the a rectangular region in the sky."
+
+dependencies = [
+ "numpy",
+ "astropy",
+ "healpy",
+ "scipy",
+ "h5py",
+]
+
+license = { text = "RRI" }
+
+requires-python = ">=3.11.8"
+
+authors = [
+    { name = "Abhijeet S. Patil", email = "abhijeet@rrimail.rri.res.in" },
+    { name = "Sanjaya K. Chihnara", email = "sanjayakumar@rrimail.rri.res.in" },
+]

garib-0.0.1/setup.cfg

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+[egg_info]
+tag_build = 
+tag_date = 0
+