gapit 0.6.1__tar.gz → 0.6.2__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {gapit-0.6.1 → gapit-0.6.2}/CHANGELOG.md +8 -0
- {gapit-0.6.1 → gapit-0.6.2}/CITATION.cff +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/PKG-INFO +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/docs/agents.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/docs/agents.zh.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/docs/databases.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/docs/databases.zh.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/docs/datadir.md +2 -2
- {gapit-0.6.1 → gapit-0.6.2}/docs/datadir.zh.md +2 -2
- {gapit-0.6.1 → gapit-0.6.2}/docs/installation.md +2 -2
- {gapit-0.6.1 → gapit-0.6.2}/docs/installation.zh.md +2 -2
- {gapit-0.6.1 → gapit-0.6.2}/docs/mcp.md +4 -4
- {gapit-0.6.1 → gapit-0.6.2}/docs/mcp.zh.md +4 -4
- {gapit-0.6.1 → gapit-0.6.2}/docs/outputs.md +4 -4
- {gapit-0.6.1 → gapit-0.6.2}/docs/outputs.zh.md +4 -4
- {gapit-0.6.1 → gapit-0.6.2}/docs/quickstart.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/docs/quickstart.zh.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/docs/reads.md +6 -6
- {gapit-0.6.1 → gapit-0.6.2}/docs/reads.zh.md +6 -6
- {gapit-0.6.1 → gapit-0.6.2}/docs/screen.md +2 -2
- {gapit-0.6.1 → gapit-0.6.2}/docs/screen.zh.md +2 -2
- {gapit-0.6.1 → gapit-0.6.2}/docs/summary.md +2 -2
- {gapit-0.6.1 → gapit-0.6.2}/docs/summary.zh.md +2 -2
- {gapit-0.6.1 → gapit-0.6.2}/pixi.lock +2 -2
- {gapit-0.6.1 → gapit-0.6.2}/pixi.toml +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/pyproject.toml +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/__init__.py +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/cluster2_vp_none.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/cluster2_vp_none.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/cluster2_vp_o3k6.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/cluster2_vp_o3k6.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/cluster_exact.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/cluster_exact.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/cluster_fragmented.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/cluster_fragmented.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/cluster_typing_ambiguous.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/cluster_typing_ambiguous.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/cluster_typing_cm_exact.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/cluster_typing_cm_exact.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/cluster_typing_exact.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/cluster_typing_exact.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/cluster_vc_inaba.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/cluster_vc_inaba.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/fragments_merge.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/fragments_merge.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/gene_dec_pic_astA.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/gene_dec_pic_astA.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/gene_doumith_4b.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/gene_doumith_4b.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/gene_serotyping_l4b.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/gene_serotyping_l4b.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/gene_serotyping_mixed.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/gene_serotyping_mixed.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/gene_serotyping_vp_typed.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/gene_serotyping_vp_typed.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/gene_shigella_mixed.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/gene_shigella_mixed.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/gene_typing_exact.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/gene_typing_exact.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/reads_tinyamr.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/reads_tinyamr.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/screen_multi.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/screen_multi.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/summary_multi.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/summary_multi.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/typing_markers.json +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/tests/golden/typing_markers.md +1 -1
- {gapit-0.6.1 → gapit-0.6.2}/.gitattributes +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/.github/workflows/ci.yml +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/.github/workflows/docs.yml +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/.github/workflows/release.yml +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/.gitignore +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/AGENTS.md +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/CODE_QUALITY_REPORT.md +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/CONTRIBUTING.md +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/LICENSE +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/PLAN.md +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/README.md +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/SECURITY.md +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/SPEC.md +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/docs/custom-db.md +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/docs/custom-db.zh.md +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/docs/faq.md +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/docs/faq.zh.md +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/docs/gseek-engine.md +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/docs/gseek-engine.zh.md +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/docs/index.md +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/docs/index.zh.md +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/docs/typing.md +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/docs/typing.zh.md +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/mkdocs.yml +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/scripts/cluster_calibration.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/scripts/generate_vp_typing.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/scripts/vp_rules_matrix.tsv +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/scripts/vp_typing_support.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/blast.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/bundled.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/bundled_cluster.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/cli.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/cluster.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/cluster_math.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/clusterbuild.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/cmd_db.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/cmd_db_build.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/cmd_db_install.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/cmd_db_outdated.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/cmd_db_search.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/cmd_screen.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/cmd_screen_positionals.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/cmd_screen_reads_args.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/cmd_summary.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/cmd_typing.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/config.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/ecoh/bundled.json +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/ecoh/sequences +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/ecoli_dec/bundled.json +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/ecoli_dec/floors.json +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/ecoli_dec/records.jsonl +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/ecoli_dec/sequences +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/ecoli_dec/typing.json +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/lm_doumith/bundled.json +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/lm_doumith/sequences +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/lm_doumith/typing.json +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/ncbi/bundled.json +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/ncbi/sequences +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/resfinder/bundled.json +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/resfinder/sequences +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/vc_serogroup/bundled.json +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/vc_serogroup/floors.json +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/vc_serogroup/records.jsonl +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/vc_serogroup/sequences +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/vc_serogroup/typing.json +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/vp_ok/bundled.json +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/vp_ok/features.json +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/vp_ok/sequences +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/data/dbs/vp_ok/typing.json +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/db.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/db_build_meta.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/db_build_ops.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/db_ops.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/db_query_ops.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/db_txn.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/dbbuild.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/dbcodec.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/dispatch.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/engines.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/errors.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/fasta.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/formats/__init__.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/formats/cluster.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/formats/cluster2.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/formats/cluster_md.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/formats/csvutil.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/formats/json.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/formats/md.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/formats/reads_json.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/formats/reads_tsv.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/formats/schemas.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/formats/summary.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/formats/tsv.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/formats/typing_result.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/fragments.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/gbfeatures.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/gene_floors.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/gffparse.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/gseek_engine.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/hits.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/mcp.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/mcp_schemas.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/mcp_tools.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/minimap.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/minimap2_run.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/paf.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/proctools.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/progress.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/__init__.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/ab_k.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/ab_o.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/argannot.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/bacmet2.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/card.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/cluster_common.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/common.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/ecoh.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/ecoli_kps.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/ecoli_vf.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/kosc_k.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/kosc_o.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/kpsc_k.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/kpsc_o.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/megares.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/ncbi.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/plasmidfinder.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/resfinder.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/upec_expec_vf.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/vfdb.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/providers/victors.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/py.typed +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/readpairs.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/reads.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/records.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/report.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/screening.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/screening_cluster.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/screening_reads.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/screening_reads_positional.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/seqconvert.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/summary.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/typing_cluster2.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/typing_decide.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/typing_engine.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/typing_gene.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/typing_input.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/typing_models.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/typing_ops.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/typing_results.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/src/gapit/typing_rules.py +0 -0
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- {gapit-0.6.1 → gapit-0.6.2}/tests/test_provider_kaptive.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_provider_megares.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_provider_ncbi.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_provider_plasmidfinder.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_provider_resfinder.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_provider_upec_expec_vf.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_provider_vfdb.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_provider_victors.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_providers_common.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_readpairs.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_reads2_homologs.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_reads2_model.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_reads_aggregate.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_reads_integration.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_reads_interval_union.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_reads_streaming.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_records.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_report.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_screen_integration.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_screening_reads_unit.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_seqconvert.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_seqconvert_differential.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_streaming_chunks.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_summary.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_summary_formats.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_tsv.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_typing_command.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_typing_engine.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_typing_models.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_typing_schemes.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_typing_schemes_cluster.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_typing_stage2.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_vc_serogroup.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_version.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_vp_ok.py +0 -0
- {gapit-0.6.1 → gapit-0.6.2}/tests/test_vp_ok_acceptance.py +0 -0
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Name: gapit
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Output schemas. Twelve documents are introspectable: `report`, `typing_result`, `reads`,
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输出 schema。十二个文档可自省:`report`、`typing_result`、`reads`、`reads2`、`cluster`、`cluster2`、
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(`--minid`, `--mincov`, `--fofn`, `--noheader`, `--nopath`) do not apply; `--jobs` applies
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Transcribed from `gapit screen --help` (gapit 0.6.
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Transcribed from `gapit screen --help` (gapit 0.6.2). Flags marked *reads mode* apply only when
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you pass `--r1`/`--r2`; they are documented in [./reads.md](./reads.md).
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Every option also accepts the single-dash short form listed in the **Short** column (e.g.
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## 选项
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转写自 `gapit screen --help`(gapit 0.6.2)。标记为 *reads 模式* 的参数只在传入
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`--r1`/`--r2` 时生效,记录在 [./reads.md](./reads.md)。
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每个选项都接受 **短** 列给出的单横线短形式(例如 `--db` 的 `-d`);长形式仍是规范写法,
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## Options
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Transcribed from `gapit summary --help` (gapit 0.6.
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Transcribed from `gapit summary --help` (gapit 0.6.2):
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15
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| Flag | Type | Default | Description |
|
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## 选项
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转写自 `gapit summary --help`(gapit 0.6.
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转写自 `gapit summary --help`(gapit 0.6.2):
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| 参数 | 类型 | 默认值 | 说明 |
|
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16
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|
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- pypi: ./
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sha256:
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version: 0.6.2
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sha256: 9b658132fb916ff93a1e2530c4935a13aa52eca5059026558025a5f7c814d2e5
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requires_dist:
|
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- pydantic>=2.7
|
|
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
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[project]
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9
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10
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authors = [{ name = "indexofire", email = "indexofire@gmail.com" }]
|