galaxy 25.0.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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+ History
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+ -------
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+
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+ .. to_doc
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+
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+ -------------------
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+ 25.0.1 (2025-06-20)
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+ -------------------
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+
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+
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+ =========
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+ Bug fixes
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+ =========
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+
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+ * Fix single data element identifier to be a regular string by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20438 <https://github.com/galaxyproject/galaxy/pull/20438>`_
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+ * Relax validation of XML test assertion parsing by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20511 <https://github.com/galaxyproject/galaxy/pull/20511>`_
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+ * Add id-token: write for npm publishing by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20519 <https://github.com/galaxyproject/galaxy/pull/20519>`_
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+ * Do not expose user info to non authenticated users by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#20524 <https://github.com/galaxyproject/galaxy/pull/20524>`_
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+ * names of package extras cannot contain underscores by `@mr-c <https://github.com/mr-c>`_ in `#20525 <https://github.com/galaxyproject/galaxy/pull/20525>`_
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+ * Pin isa-rwval 0.10.11, drop conditional import handling by `@natefoo <https://github.com/natefoo>`_ in `#20527 <https://github.com/galaxyproject/galaxy/pull/20527>`_
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+ * Fix import of ``galaxy.tool_util.cwl`` module by `@nsoranzo <https://github.com/nsoranzo>`_ in `#20529 <https://github.com/galaxyproject/galaxy/pull/20529>`_
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+ * Fix `galaxy-config` script, move install to `galaxy-dependencies` in app package by `@natefoo <https://github.com/natefoo>`_ in `#20531 <https://github.com/galaxyproject/galaxy/pull/20531>`_
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+
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+ ============
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+ Enhancements
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+ ============
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+
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+ * Bump gravity dependency to 1.1.0 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20520 <https://github.com/galaxyproject/galaxy/pull/20520>`_
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+ * Update the dev package build and install script by `@natefoo <https://github.com/natefoo>`_ in `#20526 <https://github.com/galaxyproject/galaxy/pull/20526>`_
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+
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+ =============
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+ Other changes
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+ =============
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+
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+ * Merge Release 25.0 into the master branch by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20514 <https://github.com/galaxyproject/galaxy/pull/20514>`_
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+ * Fixes for static handling and the web_client package by `@natefoo <https://github.com/natefoo>`_ in `#20516 <https://github.com/galaxyproject/galaxy/pull/20516>`_
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+ * Fix link in user release notes by `@bgruening <https://github.com/bgruening>`_ in `#20518 <https://github.com/galaxyproject/galaxy/pull/20518>`_
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+ * Bump Gravity to 1.1.1 by `@natefoo <https://github.com/natefoo>`_ in `#20533 <https://github.com/galaxyproject/galaxy/pull/20533>`_
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+
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+ -------------------
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+ 25.0.0 (2025-06-18)
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+ -------------------
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+
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+
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+ =========
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+ Bug fixes
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+ =========
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+
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+ * Stabilize HistoryView.test.js by `@jmchilton <https://github.com/jmchilton>`_ in `#19165 <https://github.com/galaxyproject/galaxy/pull/19165>`_
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+ * Cleanup Jest Test Output (part 2) by `@jmchilton <https://github.com/jmchilton>`_ in `#19178 <https://github.com/galaxyproject/galaxy/pull/19178>`_
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+ * Fix Pesky warning with PersistentTaskProgressMonitorAlert.test.ts by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#19180 <https://github.com/galaxyproject/galaxy/pull/19180>`_
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+ * Cleanup Jest Test Output (part 3) by `@jmchilton <https://github.com/jmchilton>`_ in `#19185 <https://github.com/galaxyproject/galaxy/pull/19185>`_
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+ * Cleanup Jest Test Output (part 4) by `@jmchilton <https://github.com/jmchilton>`_ in `#19186 <https://github.com/galaxyproject/galaxy/pull/19186>`_
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+ * Bump tornado from 6.4.1 to 6.4.2 in /lib/galaxy/dependencies by `@dependabot[bot] <https://github.com/dependabot[bot]>`_ in `#19189 <https://github.com/galaxyproject/galaxy/pull/19189>`_
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+ * Don't calculate dataset hash for datasets in non-OK state by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19191 <https://github.com/galaxyproject/galaxy/pull/19191>`_
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+ * Cleanup test output console for tool panel tests. by `@jmchilton <https://github.com/jmchilton>`_ in `#19210 <https://github.com/galaxyproject/galaxy/pull/19210>`_
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+ * Update Vizarr package version to 0.1.6 by `@davelopez <https://github.com/davelopez>`_ in `#19228 <https://github.com/galaxyproject/galaxy/pull/19228>`_
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+ * Bump python-multipart from 0.0.17 to 0.0.18 in /lib/galaxy/dependencies by `@dependabot[bot] <https://github.com/dependabot[bot]>`_ in `#19233 <https://github.com/galaxyproject/galaxy/pull/19233>`_
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+ * Use ``resource_path()`` to access datatypes_conf.xml.sample as a package resource by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19331 <https://github.com/galaxyproject/galaxy/pull/19331>`_
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+ * Require importlib-resources also for Python 3.9-3.11 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19358 <https://github.com/galaxyproject/galaxy/pull/19358>`_
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+ * Bump jinja2 from 3.1.4 to 3.1.5 in /lib/galaxy/dependencies by `@dependabot[bot] <https://github.com/dependabot[bot]>`_ in `#19369 <https://github.com/galaxyproject/galaxy/pull/19369>`_
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+ * Node 22 unreachable fixes by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19378 <https://github.com/galaxyproject/galaxy/pull/19378>`_
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+ * Better handling of public pages and workflows authored by deleted users by `@jdavcs <https://github.com/jdavcs>`_ in `#19394 <https://github.com/galaxyproject/galaxy/pull/19394>`_
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+ * Alternative `format_source` fix by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19395 <https://github.com/galaxyproject/galaxy/pull/19395>`_
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+ * Use ``id`` entity attribute when setting ``exampleOfWork`` property by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19396 <https://github.com/galaxyproject/galaxy/pull/19396>`_
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+ * Display email activation help only if user activation is enabled by `@jdavcs <https://github.com/jdavcs>`_ in `#19402 <https://github.com/galaxyproject/galaxy/pull/19402>`_
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+ * Prevent negative offset by `@jdavcs <https://github.com/jdavcs>`_ in `#19409 <https://github.com/galaxyproject/galaxy/pull/19409>`_
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+ * Avoid using custos refresh tokens which are expired by `@martenson <https://github.com/martenson>`_ in `#19411 <https://github.com/galaxyproject/galaxy/pull/19411>`_
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+ * Fix wrong id in test_combined_mapping_and_subcollection_mapping by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19481 <https://github.com/galaxyproject/galaxy/pull/19481>`_
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+ * Fix preferred object store id reactivity by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#19491 <https://github.com/galaxyproject/galaxy/pull/19491>`_
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+ * Fix wrong URI written to `ExportObjectResultMetadata` when exporting histories to eLabFTW by `@kysrpex <https://github.com/kysrpex>`_ in `#19541 <https://github.com/galaxyproject/galaxy/pull/19541>`_
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+ * Fix `test_mulled_build.py::test_mulled_build_files_cli` with `use_mamba=True` by `@kysrpex <https://github.com/kysrpex>`_ in `#19545 <https://github.com/galaxyproject/galaxy/pull/19545>`_
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+ * Fix package test errors: Ignore mypy errors caused by social-auth-core 4.5.5 by `@jdavcs <https://github.com/jdavcs>`_ in `#19620 <https://github.com/galaxyproject/galaxy/pull/19620>`_
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+ * Update eLabFTW file source template docs by `@kysrpex <https://github.com/kysrpex>`_ in `#19632 <https://github.com/galaxyproject/galaxy/pull/19632>`_
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+ * Fix more vue tsc indicated type issues by `@jmchilton <https://github.com/jmchilton>`_ in `#19650 <https://github.com/galaxyproject/galaxy/pull/19650>`_
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+ * Yet More Vue Typing Error Fixes by `@jmchilton <https://github.com/jmchilton>`_ in `#19680 <https://github.com/galaxyproject/galaxy/pull/19680>`_
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+ * Fix incorrect type in tool_util.deps and fix package structure. by `@jmchilton <https://github.com/jmchilton>`_ in `#19702 <https://github.com/galaxyproject/galaxy/pull/19702>`_
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+ * Add linter argument to linter report function calls by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19708 <https://github.com/galaxyproject/galaxy/pull/19708>`_
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+ * Refactor tool panel handling, resolve transiently failing jest test by `@guerler <https://github.com/guerler>`_ in `#19733 <https://github.com/galaxyproject/galaxy/pull/19733>`_
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+ * Jest Cleanup (Part 5) by `@jmchilton <https://github.com/jmchilton>`_ in `#19743 <https://github.com/galaxyproject/galaxy/pull/19743>`_
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+ * Use fissix also when python3-lib2to3 is not installed by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19749 <https://github.com/galaxyproject/galaxy/pull/19749>`_
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+ * Fix setting env and tags on resubmission by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19753 <https://github.com/galaxyproject/galaxy/pull/19753>`_
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+ * Revise consistently failing edam tool panel view test. by `@jmchilton <https://github.com/jmchilton>`_ in `#19762 <https://github.com/galaxyproject/galaxy/pull/19762>`_
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+ * Add missing tool test file by `@jmchilton <https://github.com/jmchilton>`_ in `#19763 <https://github.com/galaxyproject/galaxy/pull/19763>`_
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+ * Bump axios from 1.7.4 to 1.8.2 in /client by `@dependabot[bot] <https://github.com/dependabot[bot]>`_ in `#19773 <https://github.com/galaxyproject/galaxy/pull/19773>`_
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+ * Fix wording of API doc string by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19776 <https://github.com/galaxyproject/galaxy/pull/19776>`_
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+ * Add better `WorkflowSummary` type by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19779 <https://github.com/galaxyproject/galaxy/pull/19779>`_
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+ * Fix workflow run graph non input steps not appearing bug by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19781 <https://github.com/galaxyproject/galaxy/pull/19781>`_
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+ * Update webdav user file source template help text by `@sanjaysrikakulam <https://github.com/sanjaysrikakulam>`_ in `#19784 <https://github.com/galaxyproject/galaxy/pull/19784>`_
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+ * HelpText improvements (content, sizing) and WorkflowInvocationHeader tweaks. by `@dannon <https://github.com/dannon>`_ in `#19792 <https://github.com/galaxyproject/galaxy/pull/19792>`_
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+ * Remove unused (define* - compiler macro) imports from TextEditor.vue by `@dannon <https://github.com/dannon>`_ in `#19793 <https://github.com/galaxyproject/galaxy/pull/19793>`_
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+ * Fix Selenium workflow tests not updating param type properly. by `@jmchilton <https://github.com/jmchilton>`_ in `#19810 <https://github.com/galaxyproject/galaxy/pull/19810>`_
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+ * Fix Galaxy ignoring job object_store_id for quota check by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19854 <https://github.com/galaxyproject/galaxy/pull/19854>`_
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+ * Cleanup circular dependencies around utils.ts. by `@jmchilton <https://github.com/jmchilton>`_ in `#19857 <https://github.com/galaxyproject/galaxy/pull/19857>`_
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+ * Remove circular dependency around user store. by `@jmchilton <https://github.com/jmchilton>`_ in `#19859 <https://github.com/galaxyproject/galaxy/pull/19859>`_
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+ * Move some store types out into own file to reduce circular dependencies. by `@jmchilton <https://github.com/jmchilton>`_ in `#19860 <https://github.com/galaxyproject/galaxy/pull/19860>`_
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+ * Fix most new vue typescript errors discovered in #19851 by `@jmchilton <https://github.com/jmchilton>`_ in `#19862 <https://github.com/galaxyproject/galaxy/pull/19862>`_
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+ * Create rucio.cfg from inside Rucio objectstore by `@SergeyYakubov <https://github.com/SergeyYakubov>`_ in `#19863 <https://github.com/galaxyproject/galaxy/pull/19863>`_
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+ * Fix broken optimisation introduced in #19852 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19871 <https://github.com/galaxyproject/galaxy/pull/19871>`_
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+ * Fix various mypy issues around mapped attributes by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19883 <https://github.com/galaxyproject/galaxy/pull/19883>`_
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+ * More fixes to `FormData` drag and drop and typing by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19900 <https://github.com/galaxyproject/galaxy/pull/19900>`_
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+ * Use FA Component (w/svg) instead of span+font in RunWorkflow header by `@dannon <https://github.com/dannon>`_ in `#19901 <https://github.com/galaxyproject/galaxy/pull/19901>`_
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+ * Change wording in the google drive user file source template by `@sanjaysrikakulam <https://github.com/sanjaysrikakulam>`_ in `#19927 <https://github.com/galaxyproject/galaxy/pull/19927>`_
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+ * Move `FormBoolean` back to `FormElement` field in workflow run form by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19938 <https://github.com/galaxyproject/galaxy/pull/19938>`_
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+ * Fix ``test_in_directory`` on osx by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19943 <https://github.com/galaxyproject/galaxy/pull/19943>`_
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+ * Fix adding tags popup closing logic on focus out by `@itisAliRH <https://github.com/itisAliRH>`_ in `#19950 <https://github.com/galaxyproject/galaxy/pull/19950>`_
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+ * Use lower case extension for setting datatype in data discovery by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19954 <https://github.com/galaxyproject/galaxy/pull/19954>`_
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+ * Fix ownership check in history contents update route by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19969 <https://github.com/galaxyproject/galaxy/pull/19969>`_
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+ * Remove hgv_sift from tool_conf.xml.sample by `@natefoo <https://github.com/natefoo>`_ in `#19972 <https://github.com/galaxyproject/galaxy/pull/19972>`_
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+ * Unwind more client dependencies at top of stack. by `@jmchilton <https://github.com/jmchilton>`_ in `#19983 <https://github.com/galaxyproject/galaxy/pull/19983>`_
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+ * Fix `keyedCache` never allowing multiple fetches by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20020 <https://github.com/galaxyproject/galaxy/pull/20020>`_
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+ * Pass host url to visualizations by `@guerler <https://github.com/guerler>`_ in `#20022 <https://github.com/galaxyproject/galaxy/pull/20022>`_
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+ * Also chown R lib in RStudio BioC tool by `@natefoo <https://github.com/natefoo>`_ in `#20025 <https://github.com/galaxyproject/galaxy/pull/20025>`_
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+ * Add new line to vtpascii test file by `@guerler <https://github.com/guerler>`_ in `#20051 <https://github.com/galaxyproject/galaxy/pull/20051>`_
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+ * Fix linting with markdown in tool help by `@bgruening <https://github.com/bgruening>`_ in `#20058 <https://github.com/galaxyproject/galaxy/pull/20058>`_
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+ * Update breadcrumb item 'to' type for better routing support by `@itisAliRH <https://github.com/itisAliRH>`_ in `#20065 <https://github.com/galaxyproject/galaxy/pull/20065>`_
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+ * Always render Outputs tab in invocation view by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20073 <https://github.com/galaxyproject/galaxy/pull/20073>`_
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+ * Remove collapse invocations panel on mouseleave feature by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20074 <https://github.com/galaxyproject/galaxy/pull/20074>`_
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+ * Bump http-proxy-middleware from 2.0.7 to 2.0.9 in /client by `@dependabot[bot] <https://github.com/dependabot[bot]>`_ in `#20086 <https://github.com/galaxyproject/galaxy/pull/20086>`_
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+ * Fix `test_workflow_run` export selenium by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20089 <https://github.com/galaxyproject/galaxy/pull/20089>`_
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+ * Fix and migrate Drawrna by `@guerler <https://github.com/guerler>`_ in `#20102 <https://github.com/galaxyproject/galaxy/pull/20102>`_
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+ * Add hid to selection field in visualization creation form by `@guerler <https://github.com/guerler>`_ in `#20108 <https://github.com/galaxyproject/galaxy/pull/20108>`_
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+ * Remove only the Docker images specific for the test by `@nsoranzo <https://github.com/nsoranzo>`_ in `#20109 <https://github.com/galaxyproject/galaxy/pull/20109>`_
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+ * Fixes for GButtons with disabled state by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20121 <https://github.com/galaxyproject/galaxy/pull/20121>`_
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+ * Sort visualization datasets by hid by `@guerler <https://github.com/guerler>`_ in `#20123 <https://github.com/galaxyproject/galaxy/pull/20123>`_
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+ * Wait for Gbutton to become enabled by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20131 <https://github.com/galaxyproject/galaxy/pull/20131>`_
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+ * Allow deferred and ok state datasets for vis by `@guerler <https://github.com/guerler>`_ in `#20143 <https://github.com/galaxyproject/galaxy/pull/20143>`_
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+ * Fix certain cases of collection parameter handling during workflow execution. by `@jmchilton <https://github.com/jmchilton>`_ in `#20152 <https://github.com/galaxyproject/galaxy/pull/20152>`_
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+ * Yaml parser fixes part2 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20162 <https://github.com/galaxyproject/galaxy/pull/20162>`_
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+ * Fix tapis module typing errors by `@jdavcs <https://github.com/jdavcs>`_ in `#20175 <https://github.com/galaxyproject/galaxy/pull/20175>`_
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+ * Use ``backports.zoneinfo`` in ``job_metrics`` package under Python <3.9 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#20178 <https://github.com/galaxyproject/galaxy/pull/20178>`_
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+ * Update tabular_csv.py to use less memory in tsv->csv conversion by `@cat-bro <https://github.com/cat-bro>`_ in `#20187 <https://github.com/galaxyproject/galaxy/pull/20187>`_
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+ * Corrects header levels in Visualization Help Markdown by `@guerler <https://github.com/guerler>`_ in `#20199 <https://github.com/galaxyproject/galaxy/pull/20199>`_
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+ * Move UnprivilegedToolResponse into api by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20207 <https://github.com/galaxyproject/galaxy/pull/20207>`_
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+ * Package fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#20208 <https://github.com/galaxyproject/galaxy/pull/20208>`_
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+ * Fix NFDI auth by `@bgruening <https://github.com/bgruening>`_ in `#20217 <https://github.com/galaxyproject/galaxy/pull/20217>`_
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+ * Fix next milestone by `@martenson <https://github.com/martenson>`_ in `#20219 <https://github.com/galaxyproject/galaxy/pull/20219>`_
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+ * Group Tool Versions in IT Panel by `@dannon <https://github.com/dannon>`_ in `#20244 <https://github.com/galaxyproject/galaxy/pull/20244>`_
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+ * Fix vue-tsc issue in ParameterStep by `@dannon <https://github.com/dannon>`_ in `#20245 <https://github.com/galaxyproject/galaxy/pull/20245>`_
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+ * Replace Bootstrap Popover with Popper wrapper by `@guerler <https://github.com/guerler>`_ in `#20246 <https://github.com/galaxyproject/galaxy/pull/20246>`_
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+ * Fix tool-provided metadata for CONVERTER_tar_to_directory by `@mr-c <https://github.com/mr-c>`_ in `#20260 <https://github.com/galaxyproject/galaxy/pull/20260>`_
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+ * Fix theme selector by `@guerler <https://github.com/guerler>`_ in `#20275 <https://github.com/galaxyproject/galaxy/pull/20275>`_
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+ * Fix interactive activity highlighting by `@guerler <https://github.com/guerler>`_ in `#20276 <https://github.com/galaxyproject/galaxy/pull/20276>`_
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+ * Fix inconsistent header sizes by `@guerler <https://github.com/guerler>`_ in `#20277 <https://github.com/galaxyproject/galaxy/pull/20277>`_
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+ * Add non-dev httpx dependency by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20281 <https://github.com/galaxyproject/galaxy/pull/20281>`_
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+ * Remove duplicated job id in job success view by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20289 <https://github.com/galaxyproject/galaxy/pull/20289>`_
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+ * Skip multiple pasted URLs when checking for remote Zip by `@davelopez <https://github.com/davelopez>`_ in `#20300 <https://github.com/galaxyproject/galaxy/pull/20300>`_
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+ * Fix masthead logo height by `@guerler <https://github.com/guerler>`_ in `#20302 <https://github.com/galaxyproject/galaxy/pull/20302>`_
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+ * Increase proxy API robustness by validating URL before use by `@davelopez <https://github.com/davelopez>`_ in `#20311 <https://github.com/galaxyproject/galaxy/pull/20311>`_
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+ * Rerun workflows for the correct version/instance by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20313 <https://github.com/galaxyproject/galaxy/pull/20313>`_
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+ * Avoid displaying dataset tab view in window manager by `@guerler <https://github.com/guerler>`_ in `#20317 <https://github.com/galaxyproject/galaxy/pull/20317>`_
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+ * Fix display urls by `@dannon <https://github.com/dannon>`_ in `#20318 <https://github.com/galaxyproject/galaxy/pull/20318>`_
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+ * Fix workflow bookmark filtering by `@davelopez <https://github.com/davelopez>`_ in `#20325 <https://github.com/galaxyproject/galaxy/pull/20325>`_
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+ * Add test for workflow instance download fix by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20326 <https://github.com/galaxyproject/galaxy/pull/20326>`_
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+ * Add basic validation to workflow creator attribute by `@jdavcs <https://github.com/jdavcs>`_ in `#20328 <https://github.com/galaxyproject/galaxy/pull/20328>`_
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+ * Fix broken admin navigation option and add missing menu items by `@dannon <https://github.com/dannon>`_ in `#20333 <https://github.com/galaxyproject/galaxy/pull/20333>`_
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+ * Error on duplicate labels by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#20335 <https://github.com/galaxyproject/galaxy/pull/20335>`_
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+ * Small UI fixes for ag-grid based rule grid. by `@jmchilton <https://github.com/jmchilton>`_ in `#20358 <https://github.com/galaxyproject/galaxy/pull/20358>`_
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+ * Fix selection issue when adding tags to workflows in bulk by `@davelopez <https://github.com/davelopez>`_ in `#20362 <https://github.com/galaxyproject/galaxy/pull/20362>`_
160
+ * Log invalid vault paths by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20363 <https://github.com/galaxyproject/galaxy/pull/20363>`_
161
+ * Remove redundant badge when creating collection from upload by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20367 <https://github.com/galaxyproject/galaxy/pull/20367>`_
162
+ * Make invocation errors more compact by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20369 <https://github.com/galaxyproject/galaxy/pull/20369>`_
163
+ * Generate a tenant-unique UID for tapis. by `@dannon <https://github.com/dannon>`_ in `#20370 <https://github.com/galaxyproject/galaxy/pull/20370>`_
164
+ * Use router to route to creating a new file source by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20374 <https://github.com/galaxyproject/galaxy/pull/20374>`_
165
+ * Fix radio button options in CopyModal by `@davelopez <https://github.com/davelopez>`_ in `#20378 <https://github.com/galaxyproject/galaxy/pull/20378>`_
166
+ * Fix conda_link to use platform.machine() for architecture detection by `@chrisagrams <https://github.com/chrisagrams>`_ in `#20381 <https://github.com/galaxyproject/galaxy/pull/20381>`_
167
+ * Fix create file source button, show only at root by `@davelopez <https://github.com/davelopez>`_ in `#20385 <https://github.com/galaxyproject/galaxy/pull/20385>`_
168
+ * Force Monaco into a separate bundle by `@dannon <https://github.com/dannon>`_ in `#20396 <https://github.com/galaxyproject/galaxy/pull/20396>`_
169
+ * Prevent waiting for history item state to be ok in uploader by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20397 <https://github.com/galaxyproject/galaxy/pull/20397>`_
170
+ * Fix toolshed-installed tool icons by `@dannon <https://github.com/dannon>`_ in `#20399 <https://github.com/galaxyproject/galaxy/pull/20399>`_
171
+ * Add job config variable for singularity `--contain` by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#20400 <https://github.com/galaxyproject/galaxy/pull/20400>`_
172
+ * Fix form select input sorting by `@davelopez <https://github.com/davelopez>`_ in `#20401 <https://github.com/galaxyproject/galaxy/pull/20401>`_
173
+ * Bug fix: allow any collection type in FormCollectionType. by `@jmchilton <https://github.com/jmchilton>`_ in `#20403 <https://github.com/galaxyproject/galaxy/pull/20403>`_
174
+ * Fixes for the admin jobs interface by `@martenson <https://github.com/martenson>`_ in `#20405 <https://github.com/galaxyproject/galaxy/pull/20405>`_
175
+ * Fix $app attribute access in cheetah templates by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20414 <https://github.com/galaxyproject/galaxy/pull/20414>`_
176
+ * Fix job rerun with tool version change by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20417 <https://github.com/galaxyproject/galaxy/pull/20417>`_
177
+ * Update pulsar-galaxy-lib to 0.15.8 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20419 <https://github.com/galaxyproject/galaxy/pull/20419>`_
178
+ * Update triggers by `@jdavcs <https://github.com/jdavcs>`_ in `#20425 <https://github.com/galaxyproject/galaxy/pull/20425>`_
179
+ * Fix workflow logo URL not being persisted. by `@jmchilton <https://github.com/jmchilton>`_ in `#20428 <https://github.com/galaxyproject/galaxy/pull/20428>`_
180
+ * Fix css alignment styling of login page by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20429 <https://github.com/galaxyproject/galaxy/pull/20429>`_
181
+ * Add user-facing explanation for legacy workflow run form usage by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20431 <https://github.com/galaxyproject/galaxy/pull/20431>`_
182
+ * Upgrade tensorflow conditional dependency version to 2.15.1 by `@cat-bro <https://github.com/cat-bro>`_ in `#20434 <https://github.com/galaxyproject/galaxy/pull/20434>`_
183
+ * Fix copying of job metrics for cached jobs by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20436 <https://github.com/galaxyproject/galaxy/pull/20436>`_
184
+ * Dataset Display and Preferred Viz fixes by `@dannon <https://github.com/dannon>`_ in `#20439 <https://github.com/galaxyproject/galaxy/pull/20439>`_
185
+ * Wrap Tool and Workflow run headers properly by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20440 <https://github.com/galaxyproject/galaxy/pull/20440>`_
186
+ * Fix inconsistent styling in List Collection Builder selector by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20442 <https://github.com/galaxyproject/galaxy/pull/20442>`_
187
+ * Fix add button is enabled when empty tag list by `@davelopez <https://github.com/davelopez>`_ in `#20443 <https://github.com/galaxyproject/galaxy/pull/20443>`_
188
+ * Set ``GALAXY_CONFIG_FILE`` env var if starting handler with `-c` by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20449 <https://github.com/galaxyproject/galaxy/pull/20449>`_
189
+ * Fix pagination state in FilesDialog by `@davelopez <https://github.com/davelopez>`_ in `#20452 <https://github.com/galaxyproject/galaxy/pull/20452>`_
190
+ * Data Libraries - persist number of entries displayed in folders by `@dannon <https://github.com/dannon>`_ in `#20455 <https://github.com/galaxyproject/galaxy/pull/20455>`_
191
+ * Fix multiple remote file upload to collection creator by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20456 <https://github.com/galaxyproject/galaxy/pull/20456>`_
192
+ * Bug fix: paired_or_unpaired also endswith paired. by `@jmchilton <https://github.com/jmchilton>`_ in `#20458 <https://github.com/galaxyproject/galaxy/pull/20458>`_
193
+ * Fix bug with handling compressed file names while auto-pairing. by `@jmchilton <https://github.com/jmchilton>`_ in `#20459 <https://github.com/galaxyproject/galaxy/pull/20459>`_
194
+ * Fix dataset error button not using router by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20472 <https://github.com/galaxyproject/galaxy/pull/20472>`_
195
+ * Don't fit workflow if it doesn't have steps by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20480 <https://github.com/galaxyproject/galaxy/pull/20480>`_
196
+ * Remove rename modal from List Collection Creator by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20487 <https://github.com/galaxyproject/galaxy/pull/20487>`_
197
+ * Use DatasetAsImage component for DatasetView image display by `@dannon <https://github.com/dannon>`_ in `#20488 <https://github.com/galaxyproject/galaxy/pull/20488>`_
198
+ * Recreate triggers by `@jdavcs <https://github.com/jdavcs>`_ in `#20491 <https://github.com/galaxyproject/galaxy/pull/20491>`_
199
+ * Allow workflow description to show full text by `@davelopez <https://github.com/davelopez>`_ in `#20500 <https://github.com/galaxyproject/galaxy/pull/20500>`_
200
+
201
+ ============
202
+ Enhancements
203
+ ============
204
+
205
+ * Dynamic options: add data table filter by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#12941 <https://github.com/galaxyproject/galaxy/pull/12941>`_
206
+ * Run the tool working dir backup/restore on Pulsar by `@natefoo <https://github.com/natefoo>`_ in `#16696 <https://github.com/galaxyproject/galaxy/pull/16696>`_
207
+ * Strip galaxy filename annotation on upload by `@GomeChas <https://github.com/GomeChas>`_ in `#18561 <https://github.com/galaxyproject/galaxy/pull/18561>`_
208
+ * Isolate singularity containers more thoroughly for better reproducibility. by `@rhpvorderman <https://github.com/rhpvorderman>`_ in `#18628 <https://github.com/galaxyproject/galaxy/pull/18628>`_
209
+ * Upgrade bundled/requested node version to 22.15.0 by `@dannon <https://github.com/dannon>`_ in `#18710 <https://github.com/galaxyproject/galaxy/pull/18710>`_
210
+ * Workflow Editor Activity Bar by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#18729 <https://github.com/galaxyproject/galaxy/pull/18729>`_
211
+ * Add author and tools details in RO-Crate by `@Marie59 <https://github.com/Marie59>`_ in `#18820 <https://github.com/galaxyproject/galaxy/pull/18820>`_
212
+ * Extend image metadata by `@kostrykin <https://github.com/kostrykin>`_ in `#18951 <https://github.com/galaxyproject/galaxy/pull/18951>`_
213
+ * Implement tool markdown reports. by `@jmchilton <https://github.com/jmchilton>`_ in `#19054 <https://github.com/galaxyproject/galaxy/pull/19054>`_
214
+ * Avoid persisting credentials on checkout step of the Github actions by `@arash77 <https://github.com/arash77>`_ in `#19089 <https://github.com/galaxyproject/galaxy/pull/19089>`_
215
+ * Let file sources choose a path for uploaded files by `@kysrpex <https://github.com/kysrpex>`_ in `#19154 <https://github.com/galaxyproject/galaxy/pull/19154>`_
216
+ * Move heatmap visualization to new script endpoint by `@guerler <https://github.com/guerler>`_ in `#19176 <https://github.com/galaxyproject/galaxy/pull/19176>`_
217
+ * Calculate hash for new non-deferred datasets when finishing a job by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19181 <https://github.com/galaxyproject/galaxy/pull/19181>`_
218
+ * Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19190 <https://github.com/galaxyproject/galaxy/pull/19190>`_
219
+ * Move phylocanvas to script entry point by `@guerler <https://github.com/guerler>`_ in `#19193 <https://github.com/galaxyproject/galaxy/pull/19193>`_
220
+ * Fix UP031 errors - Part 1 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19194 <https://github.com/galaxyproject/galaxy/pull/19194>`_
221
+ * Drop thumbs up reaction as pull request approval method by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19202 <https://github.com/galaxyproject/galaxy/pull/19202>`_
222
+ * Fix UP031 errors - Part 2 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19204 <https://github.com/galaxyproject/galaxy/pull/19204>`_
223
+ * Add plotly.js by `@guerler <https://github.com/guerler>`_ in `#19206 <https://github.com/galaxyproject/galaxy/pull/19206>`_
224
+ * Switch h5web to script endpoint by `@guerler <https://github.com/guerler>`_ in `#19211 <https://github.com/galaxyproject/galaxy/pull/19211>`_
225
+ * Update visualizations to latest charts package by `@guerler <https://github.com/guerler>`_ in `#19213 <https://github.com/galaxyproject/galaxy/pull/19213>`_
226
+ * Fix UP031 errors - Part 3 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19218 <https://github.com/galaxyproject/galaxy/pull/19218>`_
227
+ * Add Vitessce Viewer by `@guerler <https://github.com/guerler>`_ in `#19227 <https://github.com/galaxyproject/galaxy/pull/19227>`_
228
+ * Fix UP031 errors - Part 4 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19235 <https://github.com/galaxyproject/galaxy/pull/19235>`_
229
+ * Explicitly add cwl-utils to dependencies by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19257 <https://github.com/galaxyproject/galaxy/pull/19257>`_
230
+ * Refactor for better reuse of workflow parameter type constants by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19260 <https://github.com/galaxyproject/galaxy/pull/19260>`_
231
+ * Fix UP031 errors - Part 5 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19282 <https://github.com/galaxyproject/galaxy/pull/19282>`_
232
+ * Workflow Run Form Enhancements by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19294 <https://github.com/galaxyproject/galaxy/pull/19294>`_
233
+ * Minor drag style adjustment for activities by `@guerler <https://github.com/guerler>`_ in `#19299 <https://github.com/galaxyproject/galaxy/pull/19299>`_
234
+ * Extract and typescript-ify datatype selection in wfeditor. by `@jmchilton <https://github.com/jmchilton>`_ in `#19304 <https://github.com/galaxyproject/galaxy/pull/19304>`_
235
+ * Migrate WF Collection Input Form Definition to Client Side by `@jmchilton <https://github.com/jmchilton>`_ in `#19313 <https://github.com/galaxyproject/galaxy/pull/19313>`_
236
+ * Fix UP031 errors - Part 6 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19314 <https://github.com/galaxyproject/galaxy/pull/19314>`_
237
+ * eLabFTW integration via Galaxy file source by `@kysrpex <https://github.com/kysrpex>`_ in `#19319 <https://github.com/galaxyproject/galaxy/pull/19319>`_
238
+ * Update pydantic to 2.10.3 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19326 <https://github.com/galaxyproject/galaxy/pull/19326>`_
239
+ * Add workflow selection and bulk actions by `@itisAliRH <https://github.com/itisAliRH>`_ in `#19336 <https://github.com/galaxyproject/galaxy/pull/19336>`_
240
+ * Refactor and add tests for Popovers by `@guerler <https://github.com/guerler>`_ in `#19337 <https://github.com/galaxyproject/galaxy/pull/19337>`_
241
+ * Use popper wrapper for help text popover by `@guerler <https://github.com/guerler>`_ in `#19340 <https://github.com/galaxyproject/galaxy/pull/19340>`_
242
+ * Misc fixes 202412 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19341 <https://github.com/galaxyproject/galaxy/pull/19341>`_
243
+ * Rework some form components for reuse. by `@jmchilton <https://github.com/jmchilton>`_ in `#19347 <https://github.com/galaxyproject/galaxy/pull/19347>`_
244
+ * Hide outdated visualizations from visualizations activity panel by `@guerler <https://github.com/guerler>`_ in `#19353 <https://github.com/galaxyproject/galaxy/pull/19353>`_
245
+ * Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19366 <https://github.com/galaxyproject/galaxy/pull/19366>`_
246
+ * Add Dataverse RDM repository integration by `@KaiOnGitHub <https://github.com/KaiOnGitHub>`_ in `#19367 <https://github.com/galaxyproject/galaxy/pull/19367>`_
247
+ * Type annotation fixes for mypy 1.14.0 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19372 <https://github.com/galaxyproject/galaxy/pull/19372>`_
248
+ * Make conditional discriminators literals instead of generic string/bool by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19374 <https://github.com/galaxyproject/galaxy/pull/19374>`_
249
+ * Empower Users to Build More Kinds of Collections, More Intelligently by `@jmchilton <https://github.com/jmchilton>`_ in `#19377 <https://github.com/galaxyproject/galaxy/pull/19377>`_
250
+ * Remove apptainer-version pin by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19380 <https://github.com/galaxyproject/galaxy/pull/19380>`_
251
+ * Clarify that extra_scopes is sometimes non-optional by `@martenson <https://github.com/martenson>`_ in `#19385 <https://github.com/galaxyproject/galaxy/pull/19385>`_
252
+ * SQLAlchemy 2.0 follow-up by `@jdavcs <https://github.com/jdavcs>`_ in `#19388 <https://github.com/galaxyproject/galaxy/pull/19388>`_
253
+ * Documentation around highlighting PRs for release notes. by `@jmchilton <https://github.com/jmchilton>`_ in `#19390 <https://github.com/galaxyproject/galaxy/pull/19390>`_
254
+ * Change galaxy system user uid for K8s image by `@afgane <https://github.com/afgane>`_ in `#19403 <https://github.com/galaxyproject/galaxy/pull/19403>`_
255
+ * Gulp build improvements, update. by `@dannon <https://github.com/dannon>`_ in `#19405 <https://github.com/galaxyproject/galaxy/pull/19405>`_
256
+ * Set safe default extraction filter for tar archives by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19406 <https://github.com/galaxyproject/galaxy/pull/19406>`_
257
+ * Remove transaction helper by `@jdavcs <https://github.com/jdavcs>`_ in `#19407 <https://github.com/galaxyproject/galaxy/pull/19407>`_
258
+ * Prevent users from reusing a banned email after account is purged by `@jdavcs <https://github.com/jdavcs>`_ in `#19413 <https://github.com/galaxyproject/galaxy/pull/19413>`_
259
+ * Irods objectstore templates by `@pauldg <https://github.com/pauldg>`_ in `#19415 <https://github.com/galaxyproject/galaxy/pull/19415>`_
260
+ * Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19418 <https://github.com/galaxyproject/galaxy/pull/19418>`_
261
+ * Enable cloning subworkflows by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#19420 <https://github.com/galaxyproject/galaxy/pull/19420>`_
262
+ * Allow controlling strict channel priority in mulled-build by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19425 <https://github.com/galaxyproject/galaxy/pull/19425>`_
263
+ * Add IGB display support for CRAM files by `@paige-kulzer <https://github.com/paige-kulzer>`_ in `#19428 <https://github.com/galaxyproject/galaxy/pull/19428>`_
264
+ * Document `$__user_name__` by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19433 <https://github.com/galaxyproject/galaxy/pull/19433>`_
265
+ * Add User-Defined Tools by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19434 <https://github.com/galaxyproject/galaxy/pull/19434>`_
266
+ * Type annotations improvements by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19442 <https://github.com/galaxyproject/galaxy/pull/19442>`_
267
+ * Handles S3 listing errors by `@itisAliRH <https://github.com/itisAliRH>`_ in `#19446 <https://github.com/galaxyproject/galaxy/pull/19446>`_
268
+ * Improve asynchronous tasks error handling and reporting by `@davelopez <https://github.com/davelopez>`_ in `#19448 <https://github.com/galaxyproject/galaxy/pull/19448>`_
269
+ * Reset invocation export wizard after completion by `@davelopez <https://github.com/davelopez>`_ in `#19449 <https://github.com/galaxyproject/galaxy/pull/19449>`_
270
+ * Workflow Editor Auto Zoom by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#19451 <https://github.com/galaxyproject/galaxy/pull/19451>`_
271
+ * Update main citation to 2024 community paper by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19453 <https://github.com/galaxyproject/galaxy/pull/19453>`_
272
+ * Add test that verifies workflow source_metadata is preserved on landing claim by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19454 <https://github.com/galaxyproject/galaxy/pull/19454>`_
273
+ * Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19464 <https://github.com/galaxyproject/galaxy/pull/19464>`_
274
+ * Type annotation improvements by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19485 <https://github.com/galaxyproject/galaxy/pull/19485>`_
275
+ * Add eLabFTW file source from file source templates by `@kysrpex <https://github.com/kysrpex>`_ in `#19493 <https://github.com/galaxyproject/galaxy/pull/19493>`_
276
+ * Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19510 <https://github.com/galaxyproject/galaxy/pull/19510>`_
277
+ * Remote File Sources and Storage Locations redesign by `@itisAliRH <https://github.com/itisAliRH>`_ in `#19521 <https://github.com/galaxyproject/galaxy/pull/19521>`_
278
+ * Support setting and displaying timezone with the core metrics plugin by `@natefoo <https://github.com/natefoo>`_ in `#19527 <https://github.com/galaxyproject/galaxy/pull/19527>`_
279
+ * Allow to send notifications when Admins cancel jobs by `@davelopez <https://github.com/davelopez>`_ in `#19547 <https://github.com/galaxyproject/galaxy/pull/19547>`_
280
+ * Add config options for tool dependency installs by `@afgane <https://github.com/afgane>`_ in `#19565 <https://github.com/galaxyproject/galaxy/pull/19565>`_
281
+ * Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19567 <https://github.com/galaxyproject/galaxy/pull/19567>`_
282
+ * Remove tags used by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#19576 <https://github.com/galaxyproject/galaxy/pull/19576>`_
283
+ * Support setting masthead height in a theme by `@ksuderman <https://github.com/ksuderman>`_ in `#19581 <https://github.com/galaxyproject/galaxy/pull/19581>`_
284
+ * Expand workflow metadata for readme. by `@jmchilton <https://github.com/jmchilton>`_ in `#19591 <https://github.com/galaxyproject/galaxy/pull/19591>`_
285
+ * Add vue-tsc baseline comparison to client-lint workflow by `@dannon <https://github.com/dannon>`_ in `#19593 <https://github.com/galaxyproject/galaxy/pull/19593>`_
286
+ * Add failed jobs working directory cleanup as a celery periodic task by `@sanjaysrikakulam <https://github.com/sanjaysrikakulam>`_ in `#19594 <https://github.com/galaxyproject/galaxy/pull/19594>`_
287
+ * Enhance OpenAI Chat Integration by `@uwwint <https://github.com/uwwint>`_ in `#19612 <https://github.com/galaxyproject/galaxy/pull/19612>`_
288
+ * Add InvenioRDM file source template by `@davelopez <https://github.com/davelopez>`_ in `#19619 <https://github.com/galaxyproject/galaxy/pull/19619>`_
289
+ * Use discriminated unions in object stores and file source template configs by `@davelopez <https://github.com/davelopez>`_ in `#19621 <https://github.com/galaxyproject/galaxy/pull/19621>`_
290
+ * Use correct `plugin_kind` in user file sources by `@davelopez <https://github.com/davelopez>`_ in `#19622 <https://github.com/galaxyproject/galaxy/pull/19622>`_
291
+ * Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19623 <https://github.com/galaxyproject/galaxy/pull/19623>`_
292
+ * Format code with black 25.1.0 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19625 <https://github.com/galaxyproject/galaxy/pull/19625>`_
293
+ * Add Zenodo file source template by `@davelopez <https://github.com/davelopez>`_ in `#19638 <https://github.com/galaxyproject/galaxy/pull/19638>`_
294
+ * Type annotation improvements by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19642 <https://github.com/galaxyproject/galaxy/pull/19642>`_
295
+ * Workflow landing request - collapse activity bar by default. by `@dannon <https://github.com/dannon>`_ in `#19652 <https://github.com/galaxyproject/galaxy/pull/19652>`_
296
+ * Enhance ListHeader Component for Reusability by `@itisAliRH <https://github.com/itisAliRH>`_ in `#19655 <https://github.com/galaxyproject/galaxy/pull/19655>`_
297
+ * Add Breadcrumb Heading Component by `@itisAliRH <https://github.com/itisAliRH>`_ in `#19656 <https://github.com/galaxyproject/galaxy/pull/19656>`_
298
+ * Mention default values for truevalue and falsevalue by `@pvanheus <https://github.com/pvanheus>`_ in `#19657 <https://github.com/galaxyproject/galaxy/pull/19657>`_
299
+ * Update test_create_dataset_in_subfolder to check for the dataset presence by `@davelopez <https://github.com/davelopez>`_ in `#19660 <https://github.com/galaxyproject/galaxy/pull/19660>`_
300
+ * Relax job status check in test_delete_user_cancel_all_jobs by `@davelopez <https://github.com/davelopez>`_ in `#19661 <https://github.com/galaxyproject/galaxy/pull/19661>`_
301
+ * Refactor dependencies for tool output actions. by `@jmchilton <https://github.com/jmchilton>`_ in `#19662 <https://github.com/galaxyproject/galaxy/pull/19662>`_
302
+ * More Vue Typescript Fixes by `@jmchilton <https://github.com/jmchilton>`_ in `#19663 <https://github.com/galaxyproject/galaxy/pull/19663>`_
303
+ * Click to edit history name in `HistoryPanel` by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19665 <https://github.com/galaxyproject/galaxy/pull/19665>`_
304
+ * Generate correct types for Dataset source transformations on backend. by `@jmchilton <https://github.com/jmchilton>`_ in `#19666 <https://github.com/galaxyproject/galaxy/pull/19666>`_
305
+ * Remove unused(?) data_dialog form element type. by `@jmchilton <https://github.com/jmchilton>`_ in `#19669 <https://github.com/galaxyproject/galaxy/pull/19669>`_
306
+ * Add webdavclient3 to conditional-requirements.txt by `@bgruening <https://github.com/bgruening>`_ in `#19671 <https://github.com/galaxyproject/galaxy/pull/19671>`_
307
+ * Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19682 <https://github.com/galaxyproject/galaxy/pull/19682>`_
308
+ * Drop support for Python 3.8 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19685 <https://github.com/galaxyproject/galaxy/pull/19685>`_
309
+ * Define simple models for job messages. by `@jmchilton <https://github.com/jmchilton>`_ in `#19688 <https://github.com/galaxyproject/galaxy/pull/19688>`_
310
+ * Data-source tool for DICED database (https://diced.lerner.ccf.org/) added. by `@jaidevjoshi83 <https://github.com/jaidevjoshi83>`_ in `#19689 <https://github.com/galaxyproject/galaxy/pull/19689>`_
311
+ * Add forgotten linter test by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19690 <https://github.com/galaxyproject/galaxy/pull/19690>`_
312
+ * Fix MarkdownDialog types by `@davelopez <https://github.com/davelopez>`_ in `#19703 <https://github.com/galaxyproject/galaxy/pull/19703>`_
313
+ * Move RequiredAppT back into galaxy packages. by `@jmchilton <https://github.com/jmchilton>`_ in `#19704 <https://github.com/galaxyproject/galaxy/pull/19704>`_
314
+ * Use model classes from ``galaxy.model`` instead of ``app.model`` object - Part 1 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19706 <https://github.com/galaxyproject/galaxy/pull/19706>`_
315
+ * Improved simplicity and isolation in transiently failing test. by `@jmchilton <https://github.com/jmchilton>`_ in `#19709 <https://github.com/galaxyproject/galaxy/pull/19709>`_
316
+ * Update RStudio IT by `@afgane <https://github.com/afgane>`_ in `#19711 <https://github.com/galaxyproject/galaxy/pull/19711>`_
317
+ * Speedup mulled build test by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19712 <https://github.com/galaxyproject/galaxy/pull/19712>`_
318
+ * Update TypeScript version to 5.7.3 by `@davelopez <https://github.com/davelopez>`_ in `#19713 <https://github.com/galaxyproject/galaxy/pull/19713>`_
319
+ * Augments popper wrapper, add click and escape handler by `@guerler <https://github.com/guerler>`_ in `#19717 <https://github.com/galaxyproject/galaxy/pull/19717>`_
320
+ * Move vega wrapper to shared common directory and add error handler by `@guerler <https://github.com/guerler>`_ in `#19718 <https://github.com/galaxyproject/galaxy/pull/19718>`_
321
+ * Move Markdown components to subdirectory for modularity by `@guerler <https://github.com/guerler>`_ in `#19719 <https://github.com/galaxyproject/galaxy/pull/19719>`_
322
+ * Rucio templates by `@SergeyYakubov <https://github.com/SergeyYakubov>`_ in `#19720 <https://github.com/galaxyproject/galaxy/pull/19720>`_
323
+ * Preserve workflow labels in final invocation reports by `@guerler <https://github.com/guerler>`_ in `#19721 <https://github.com/galaxyproject/galaxy/pull/19721>`_
324
+ * ToolShed 2.1 - Various bugfixes and enhancements. by `@jmchilton <https://github.com/jmchilton>`_ in `#19722 <https://github.com/galaxyproject/galaxy/pull/19722>`_
325
+ * Use model classes from ``galaxy.model`` instead of ``app.model`` object - Part 2 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19726 <https://github.com/galaxyproject/galaxy/pull/19726>`_
326
+ * Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19727 <https://github.com/galaxyproject/galaxy/pull/19727>`_
327
+ * Add a script to reorganize tool data based on the new layout for genomic Data Managers by `@natefoo <https://github.com/natefoo>`_ in `#19728 <https://github.com/galaxyproject/galaxy/pull/19728>`_
328
+ * Move history watcher and minor fixes by `@guerler <https://github.com/guerler>`_ in `#19732 <https://github.com/galaxyproject/galaxy/pull/19732>`_
329
+ * Fix Tours and add tooltips to history items by `@guerler <https://github.com/guerler>`_ in `#19734 <https://github.com/galaxyproject/galaxy/pull/19734>`_
330
+ * Show workflow help (and readme?) in run form by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19736 <https://github.com/galaxyproject/galaxy/pull/19736>`_
331
+ * Enhance breadcrumb navigation UX in small screen sizes by `@itisAliRH <https://github.com/itisAliRH>`_ in `#19737 <https://github.com/galaxyproject/galaxy/pull/19737>`_
332
+ * ToolShed2 - Add more context when navigating between tools an repositories. by `@jmchilton <https://github.com/jmchilton>`_ in `#19738 <https://github.com/galaxyproject/galaxy/pull/19738>`_
333
+ * Improvements to package decomposition. by `@jmchilton <https://github.com/jmchilton>`_ in `#19759 <https://github.com/galaxyproject/galaxy/pull/19759>`_
334
+ * Add cell-based markdown editor for pages by `@guerler <https://github.com/guerler>`_ in `#19769 <https://github.com/galaxyproject/galaxy/pull/19769>`_
335
+ * Rename tool "Citations" to "References" by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19770 <https://github.com/galaxyproject/galaxy/pull/19770>`_
336
+ * Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19772 <https://github.com/galaxyproject/galaxy/pull/19772>`_
337
+ * Add visualization framework interface to cell-based markdown editor by `@guerler <https://github.com/guerler>`_ in `#19775 <https://github.com/galaxyproject/galaxy/pull/19775>`_
338
+ * Allow overriding datatypes for planemo lint by `@selten <https://github.com/selten>`_ in `#19780 <https://github.com/galaxyproject/galaxy/pull/19780>`_
339
+ * Introduce reusable GCard component for unified card layout by `@itisAliRH <https://github.com/itisAliRH>`_ in `#19785 <https://github.com/galaxyproject/galaxy/pull/19785>`_
340
+ * Add history sharing and accessibility management view by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19786 <https://github.com/galaxyproject/galaxy/pull/19786>`_
341
+ * Add bigbed to bed converter and tests by `@d-callan <https://github.com/d-callan>`_ in `#19787 <https://github.com/galaxyproject/galaxy/pull/19787>`_
342
+ * xsd: use CollectionType for collections in tests by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19802 <https://github.com/galaxyproject/galaxy/pull/19802>`_
343
+ * Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19816 <https://github.com/galaxyproject/galaxy/pull/19816>`_
344
+ * Workflow Run Form Enhancements follow up by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19825 <https://github.com/galaxyproject/galaxy/pull/19825>`_
345
+ * More user feedback in FormRulesEdit (for Apply Rules tool) by `@jmchilton <https://github.com/jmchilton>`_ in `#19827 <https://github.com/galaxyproject/galaxy/pull/19827>`_
346
+ * Use direct icon references in FormSelectMany.vue. by `@jmchilton <https://github.com/jmchilton>`_ in `#19829 <https://github.com/galaxyproject/galaxy/pull/19829>`_
347
+ * Populate image metadata without allocating memory for the entire image content by `@kostrykin <https://github.com/kostrykin>`_ in `#19830 <https://github.com/galaxyproject/galaxy/pull/19830>`_
348
+ * Syntactic sugar to ease TPV configuration. by `@jmchilton <https://github.com/jmchilton>`_ in `#19834 <https://github.com/galaxyproject/galaxy/pull/19834>`_
349
+ * Improve markdown editor modularity and structure by `@guerler <https://github.com/guerler>`_ in `#19835 <https://github.com/galaxyproject/galaxy/pull/19835>`_
350
+ * Add mandatory RO-Crate metadata when exporting by `@elichad <https://github.com/elichad>`_ in `#19846 <https://github.com/galaxyproject/galaxy/pull/19846>`_
351
+ * Enable lazy loading for ace-builds by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#19847 <https://github.com/galaxyproject/galaxy/pull/19847>`_
352
+ * Add basic support for icons in tools by `@davelopez <https://github.com/davelopez>`_ in `#19850 <https://github.com/galaxyproject/galaxy/pull/19850>`_
353
+ * Webpack build performance improvements by `@dannon <https://github.com/dannon>`_ in `#19851 <https://github.com/galaxyproject/galaxy/pull/19851>`_
354
+ * Improve type annotations of ``ModelPersistenceContext`` and derived classes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19852 <https://github.com/galaxyproject/galaxy/pull/19852>`_
355
+ * Client circular dependency check by `@dannon <https://github.com/dannon>`_ in `#19858 <https://github.com/galaxyproject/galaxy/pull/19858>`_
356
+ * Migrate from Prism to Monaco for ToolSource display. by `@dannon <https://github.com/dannon>`_ in `#19861 <https://github.com/galaxyproject/galaxy/pull/19861>`_
357
+ * Drop old galaxy_session records by `@jdavcs <https://github.com/jdavcs>`_ in `#19872 <https://github.com/galaxyproject/galaxy/pull/19872>`_
358
+ * Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19874 <https://github.com/galaxyproject/galaxy/pull/19874>`_
359
+ * Add Tapis auth support by `@dannon <https://github.com/dannon>`_ in `#19887 <https://github.com/galaxyproject/galaxy/pull/19887>`_
360
+ * Make preferences drop down available in single user deployments by `@ksuderman <https://github.com/ksuderman>`_ in `#19888 <https://github.com/galaxyproject/galaxy/pull/19888>`_
361
+ * Clarify is_active method usage for Python Social Auth in Galaxy by `@dannon <https://github.com/dannon>`_ in `#19899 <https://github.com/galaxyproject/galaxy/pull/19899>`_
362
+ * FITS Graph Viewer - script name tweak. by `@dannon <https://github.com/dannon>`_ in `#19902 <https://github.com/galaxyproject/galaxy/pull/19902>`_
363
+ * Improve docs for output filters by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19904 <https://github.com/galaxyproject/galaxy/pull/19904>`_
364
+ * Various styling improvements to Workflow Run and Invocation views by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19905 <https://github.com/galaxyproject/galaxy/pull/19905>`_
365
+ * Overhaul workflow runtime settings display. by `@dannon <https://github.com/dannon>`_ in `#19906 <https://github.com/galaxyproject/galaxy/pull/19906>`_
366
+ * Allow embedding vitessce visualizations by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19909 <https://github.com/galaxyproject/galaxy/pull/19909>`_
367
+ * Replace backend-based page creation controller endpoint by `@guerler <https://github.com/guerler>`_ in `#19914 <https://github.com/galaxyproject/galaxy/pull/19914>`_
368
+ * Remove unnecessary code duplications by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19921 <https://github.com/galaxyproject/galaxy/pull/19921>`_
369
+ * Migrate Page editing controller endpoint to API by `@guerler <https://github.com/guerler>`_ in `#19923 <https://github.com/galaxyproject/galaxy/pull/19923>`_
370
+ * RStudio IT updates to work on .org by `@afgane <https://github.com/afgane>`_ in `#19924 <https://github.com/galaxyproject/galaxy/pull/19924>`_
371
+ * Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19929 <https://github.com/galaxyproject/galaxy/pull/19929>`_
372
+ * Show pre-populated landing data values in workflow run form by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19935 <https://github.com/galaxyproject/galaxy/pull/19935>`_
373
+ * Drop old job metrics by `@jdavcs <https://github.com/jdavcs>`_ in `#19936 <https://github.com/galaxyproject/galaxy/pull/19936>`_
374
+ * Fix local import in ``__resolvers_dict`` by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19944 <https://github.com/galaxyproject/galaxy/pull/19944>`_
375
+ * First steps of bootstrap replacement by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#19946 <https://github.com/galaxyproject/galaxy/pull/19946>`_
376
+ * Decrease sentry_sdk.errors log level to INFO by `@natefoo <https://github.com/natefoo>`_ in `#19951 <https://github.com/galaxyproject/galaxy/pull/19951>`_
377
+ * Allow PathLike parameters in ``make_fast_zipfile()`` by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19955 <https://github.com/galaxyproject/galaxy/pull/19955>`_
378
+ * Add link to view history on dataset info page by `@natefoo <https://github.com/natefoo>`_ in `#19956 <https://github.com/galaxyproject/galaxy/pull/19956>`_
379
+ * Allow resizing Visualizations in Markdown editor by `@guerler <https://github.com/guerler>`_ in `#19958 <https://github.com/galaxyproject/galaxy/pull/19958>`_
380
+ * Add share button for invocations by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19959 <https://github.com/galaxyproject/galaxy/pull/19959>`_
381
+ * Add type hints around collection copying and job things by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19961 <https://github.com/galaxyproject/galaxy/pull/19961>`_
382
+ * Job cache allow different names when possible by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19962 <https://github.com/galaxyproject/galaxy/pull/19962>`_
383
+ * Button replacement batch 1 by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#19963 <https://github.com/galaxyproject/galaxy/pull/19963>`_
384
+ * Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19964 <https://github.com/galaxyproject/galaxy/pull/19964>`_
385
+ * Adds a trimInputs prop to FormGeneric to trim string values on submit. by `@dannon <https://github.com/dannon>`_ in `#19971 <https://github.com/galaxyproject/galaxy/pull/19971>`_
386
+ * Add Katex Equation rendering plugin to Markdown Editor by `@guerler <https://github.com/guerler>`_ in `#19988 <https://github.com/galaxyproject/galaxy/pull/19988>`_
387
+ * Allow different AI providers (as long as they are openai compatible) by `@uwwint <https://github.com/uwwint>`_ in `#19989 <https://github.com/galaxyproject/galaxy/pull/19989>`_
388
+ * Button replacement batch 2 by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#19990 <https://github.com/galaxyproject/galaxy/pull/19990>`_
389
+ * Improve type annotation of tool parameter wrapping by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19991 <https://github.com/galaxyproject/galaxy/pull/19991>`_
390
+ * Add Niivue viewer by `@guerler <https://github.com/guerler>`_ in `#19995 <https://github.com/galaxyproject/galaxy/pull/19995>`_
391
+ * IT Activity Panel by `@dannon <https://github.com/dannon>`_ in `#19996 <https://github.com/galaxyproject/galaxy/pull/19996>`_
392
+ * Selenium test cases for running workflow from form upload. by `@jmchilton <https://github.com/jmchilton>`_ in `#19997 <https://github.com/galaxyproject/galaxy/pull/19997>`_
393
+ * Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19998 <https://github.com/galaxyproject/galaxy/pull/19998>`_
394
+ * Restore Visualization insertion options in Reports Editor by `@guerler <https://github.com/guerler>`_ in `#20000 <https://github.com/galaxyproject/galaxy/pull/20000>`_
395
+ * Implement dataset collection support in workflow landing requests by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20004 <https://github.com/galaxyproject/galaxy/pull/20004>`_
396
+ * Add kepler.gl visualization by `@guerler <https://github.com/guerler>`_ in `#20005 <https://github.com/galaxyproject/galaxy/pull/20005>`_
397
+ * Enable ``warn_redundant_casts`` mypy option and drop redundant casts by `@nsoranzo <https://github.com/nsoranzo>`_ in `#20008 <https://github.com/galaxyproject/galaxy/pull/20008>`_
398
+ * Update vitessce version by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20016 <https://github.com/galaxyproject/galaxy/pull/20016>`_
399
+ * Merge Inputs/Parameters and Outputs/Collections Tabs by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20019 <https://github.com/galaxyproject/galaxy/pull/20019>`_
400
+ * Show workflow README in split view next to the form inputs by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20026 <https://github.com/galaxyproject/galaxy/pull/20026>`_
401
+ * Add vitesscejson datatype by `@guerler <https://github.com/guerler>`_ in `#20027 <https://github.com/galaxyproject/galaxy/pull/20027>`_
402
+ * Add VTK Visualization Toolkit Plugin by `@guerler <https://github.com/guerler>`_ in `#20028 <https://github.com/galaxyproject/galaxy/pull/20028>`_
403
+ * Move README to center panel in workflow editor by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20029 <https://github.com/galaxyproject/galaxy/pull/20029>`_
404
+ * Add help text popovers for workflow runtime settings by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20031 <https://github.com/galaxyproject/galaxy/pull/20031>`_
405
+ * Add rerun option for workflows by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20032 <https://github.com/galaxyproject/galaxy/pull/20032>`_
406
+ * Add DOI to workflow metadata by `@jdavcs <https://github.com/jdavcs>`_ in `#20033 <https://github.com/galaxyproject/galaxy/pull/20033>`_
407
+ * Add support for Markdown help text in visualizations by `@guerler <https://github.com/guerler>`_ in `#20043 <https://github.com/galaxyproject/galaxy/pull/20043>`_
408
+ * Add sample datasets for visualizations by `@guerler <https://github.com/guerler>`_ in `#20046 <https://github.com/galaxyproject/galaxy/pull/20046>`_
409
+ * Add ZIP explorer to import individual files from local or remote ZIP archives by `@davelopez <https://github.com/davelopez>`_ in `#20054 <https://github.com/galaxyproject/galaxy/pull/20054>`_
410
+ * Add docx datatype by `@bgruening <https://github.com/bgruening>`_ in `#20055 <https://github.com/galaxyproject/galaxy/pull/20055>`_
411
+ * Add markdown datatype by `@bgruening <https://github.com/bgruening>`_ in `#20056 <https://github.com/galaxyproject/galaxy/pull/20056>`_
412
+ * Add flac audio format by `@bgruening <https://github.com/bgruening>`_ in `#20057 <https://github.com/galaxyproject/galaxy/pull/20057>`_
413
+ * Client refactorings ahead of #19377. by `@jmchilton <https://github.com/jmchilton>`_ in `#20059 <https://github.com/galaxyproject/galaxy/pull/20059>`_
414
+ * Add rd datatype by `@richard-burhans <https://github.com/richard-burhans>`_ in `#20060 <https://github.com/galaxyproject/galaxy/pull/20060>`_
415
+ * GLink implementation by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#20063 <https://github.com/galaxyproject/galaxy/pull/20063>`_
416
+ * GCard Full Description by `@itisAliRH <https://github.com/itisAliRH>`_ in `#20064 <https://github.com/galaxyproject/galaxy/pull/20064>`_
417
+ * Enhance Storage Dashboard Selected Item UI by `@itisAliRH <https://github.com/itisAliRH>`_ in `#20070 <https://github.com/galaxyproject/galaxy/pull/20070>`_
418
+ * Add activity panel width to local storage by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20072 <https://github.com/galaxyproject/galaxy/pull/20072>`_
419
+ * Hide non-functional and replaced visualizations (e.g. Nora, MSA) by `@guerler <https://github.com/guerler>`_ in `#20077 <https://github.com/galaxyproject/galaxy/pull/20077>`_
420
+ * Flexible mapping from collection parameter types to collection builder components. by `@jmchilton <https://github.com/jmchilton>`_ in `#20082 <https://github.com/galaxyproject/galaxy/pull/20082>`_
421
+ * Route to creating a new file source in remote file browser modal by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20084 <https://github.com/galaxyproject/galaxy/pull/20084>`_
422
+ * Use visualization dropdown solely for examples by `@guerler <https://github.com/guerler>`_ in `#20094 <https://github.com/galaxyproject/galaxy/pull/20094>`_
423
+ * Set node version to 22.13.0 by `@davelopez <https://github.com/davelopez>`_ in `#20095 <https://github.com/galaxyproject/galaxy/pull/20095>`_
424
+ * Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#20096 <https://github.com/galaxyproject/galaxy/pull/20096>`_
425
+ * Adds Example Datasets and Help Text for Visualizations by `@guerler <https://github.com/guerler>`_ in `#20097 <https://github.com/galaxyproject/galaxy/pull/20097>`_
426
+ * Enhance external login interface styling by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20100 <https://github.com/galaxyproject/galaxy/pull/20100>`_
427
+ * Add Molstar by `@guerler <https://github.com/guerler>`_ in `#20101 <https://github.com/galaxyproject/galaxy/pull/20101>`_
428
+ * Improve type annotation of `galaxy.util` submodules by `@nsoranzo <https://github.com/nsoranzo>`_ in `#20104 <https://github.com/galaxyproject/galaxy/pull/20104>`_
429
+ * Add alignment.js for multiple sequence alignment rendering by `@guerler <https://github.com/guerler>`_ in `#20110 <https://github.com/galaxyproject/galaxy/pull/20110>`_
430
+ * Add specific datatypes for Cytoscape and Kepler.gl by `@guerler <https://github.com/guerler>`_ in `#20117 <https://github.com/galaxyproject/galaxy/pull/20117>`_
431
+ * Run integration tests on latest Ubuntu by `@nsoranzo <https://github.com/nsoranzo>`_ in `#20118 <https://github.com/galaxyproject/galaxy/pull/20118>`_
432
+ * Add role creation form by `@guerler <https://github.com/guerler>`_ in `#20119 <https://github.com/galaxyproject/galaxy/pull/20119>`_
433
+ * Migrate Transition Systems Visualization by `@guerler <https://github.com/guerler>`_ in `#20125 <https://github.com/galaxyproject/galaxy/pull/20125>`_
434
+ * Add logo, description and help for aequatus by `@guerler <https://github.com/guerler>`_ in `#20128 <https://github.com/galaxyproject/galaxy/pull/20128>`_
435
+ * Drop now unused controller method by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20129 <https://github.com/galaxyproject/galaxy/pull/20129>`_
436
+ * Add updated PCA plot by `@guerler <https://github.com/guerler>`_ in `#20140 <https://github.com/galaxyproject/galaxy/pull/20140>`_
437
+ * Browse multiple trees in phylocanvas by `@guerler <https://github.com/guerler>`_ in `#20141 <https://github.com/galaxyproject/galaxy/pull/20141>`_
438
+ * Add more metadata, esp `infer_from` to datatypes configuration by `@bgruening <https://github.com/bgruening>`_ in `#20142 <https://github.com/galaxyproject/galaxy/pull/20142>`_
439
+ * Show job ids on job success by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20145 <https://github.com/galaxyproject/galaxy/pull/20145>`_
440
+ * Additional type hints for ``toolbox.get_tool`` / ``toolbox.has_tool`` by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20150 <https://github.com/galaxyproject/galaxy/pull/20150>`_
441
+ * Create working dir output outside of tool evaluator by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20153 <https://github.com/galaxyproject/galaxy/pull/20153>`_
442
+ * Improved rule builder display for non-nested lists (most of them). by `@jmchilton <https://github.com/jmchilton>`_ in `#20156 <https://github.com/galaxyproject/galaxy/pull/20156>`_
443
+ * Revise transiently failing data source test. by `@jmchilton <https://github.com/jmchilton>`_ in `#20157 <https://github.com/galaxyproject/galaxy/pull/20157>`_
444
+ * Yaml parser fixes and improvements (part 1) by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20158 <https://github.com/galaxyproject/galaxy/pull/20158>`_
445
+ * Fix remaining vue-tsc errors by `@dannon <https://github.com/dannon>`_ in `#20163 <https://github.com/galaxyproject/galaxy/pull/20163>`_
446
+ * Add three AAI providers by `@martenson <https://github.com/martenson>`_ in `#20165 <https://github.com/galaxyproject/galaxy/pull/20165>`_
447
+ * Add replacement_dataset option to collection filter tools by `@simonbray <https://github.com/simonbray>`_ in `#20166 <https://github.com/galaxyproject/galaxy/pull/20166>`_
448
+ * Implement file source to integrate Galaxy with RSpace by `@kysrpex <https://github.com/kysrpex>`_ in `#20167 <https://github.com/galaxyproject/galaxy/pull/20167>`_
449
+ * G modal implementation by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#20168 <https://github.com/galaxyproject/galaxy/pull/20168>`_
450
+ * Add client package by `@natefoo <https://github.com/natefoo>`_ in `#20171 <https://github.com/galaxyproject/galaxy/pull/20171>`_
451
+ * Add JupyterLite by `@guerler <https://github.com/guerler>`_ in `#20174 <https://github.com/galaxyproject/galaxy/pull/20174>`_
452
+ * Standalone Galaxy API Client Package by `@dannon <https://github.com/dannon>`_ in `#20181 <https://github.com/galaxyproject/galaxy/pull/20181>`_
453
+ * Add visualization test data by `@nilchia <https://github.com/nilchia>`_ in `#20183 <https://github.com/galaxyproject/galaxy/pull/20183>`_
454
+ * Bump vega from 5.30.0 to 5.32.0 in /client by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20188 <https://github.com/galaxyproject/galaxy/pull/20188>`_
455
+ * Visualization-First Display functionality by `@dannon <https://github.com/dannon>`_ in `#20190 <https://github.com/galaxyproject/galaxy/pull/20190>`_
456
+ * Improve type annotation of ``galaxy.model.dataset_collections`` by `@nsoranzo <https://github.com/nsoranzo>`_ in `#20194 <https://github.com/galaxyproject/galaxy/pull/20194>`_
457
+ * Have `make dist` in the web_client package build the client by `@natefoo <https://github.com/natefoo>`_ in `#20195 <https://github.com/galaxyproject/galaxy/pull/20195>`_
458
+ * Add plotly 6.0.1 to JupyterLite by `@guerler <https://github.com/guerler>`_ in `#20201 <https://github.com/galaxyproject/galaxy/pull/20201>`_
459
+ * Enable visualizations for anonymous user by `@guerler <https://github.com/guerler>`_ in `#20210 <https://github.com/galaxyproject/galaxy/pull/20210>`_
460
+ * Migrate ChiraViz by `@guerler <https://github.com/guerler>`_ in `#20214 <https://github.com/galaxyproject/galaxy/pull/20214>`_
461
+ * Display invocation inputs and outputs in workflow report by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20222 <https://github.com/galaxyproject/galaxy/pull/20222>`_
462
+ * Use TUS streaming and remove redundant IndexDB temp store in Zip Explorer by `@davelopez <https://github.com/davelopez>`_ in `#20226 <https://github.com/galaxyproject/galaxy/pull/20226>`_
463
+ * Add more descriptions to custom tool source schema by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20266 <https://github.com/galaxyproject/galaxy/pull/20266>`_
464
+ * Improve handling of very large files in Tabulator by `@guerler <https://github.com/guerler>`_ in `#20271 <https://github.com/galaxyproject/galaxy/pull/20271>`_
465
+ * Touch up Dataset View by `@guerler <https://github.com/guerler>`_ in `#20290 <https://github.com/galaxyproject/galaxy/pull/20290>`_
466
+ * Improve performance of job cache query by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20319 <https://github.com/galaxyproject/galaxy/pull/20319>`_
467
+ * Remove type import side-effects by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#20321 <https://github.com/galaxyproject/galaxy/pull/20321>`_
468
+ * Enable retrieving contents from extra file paths when request contains leading `/` by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20336 <https://github.com/galaxyproject/galaxy/pull/20336>`_
469
+ * DatasetView and Card Polish by `@dannon <https://github.com/dannon>`_ in `#20342 <https://github.com/galaxyproject/galaxy/pull/20342>`_
470
+ * Release notes by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20386 <https://github.com/galaxyproject/galaxy/pull/20386>`_
471
+ * Deprecate ``enable_tool_document_cache`` by `@nsoranzo <https://github.com/nsoranzo>`_ in `#20433 <https://github.com/galaxyproject/galaxy/pull/20433>`_
472
+ * Update tiffviewer to latest version supporting more formats by `@davelopez <https://github.com/davelopez>`_ in `#20457 <https://github.com/galaxyproject/galaxy/pull/20457>`_
473
+ * Add Aladin as standard FITS viewer by `@bgruening <https://github.com/bgruening>`_ in `#20465 <https://github.com/galaxyproject/galaxy/pull/20465>`_
474
+ * Add molstar as default viewer for some molecule formats by `@bgruening <https://github.com/bgruening>`_ in `#20467 <https://github.com/galaxyproject/galaxy/pull/20467>`_
475
+ * Add ``/api/datasets/{dataset_id}/extra_files/raw/{filename:path}`` by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20468 <https://github.com/galaxyproject/galaxy/pull/20468>`_
476
+
477
+ =============
478
+ Other changes
479
+ =============
480
+
481
+ * Merge 24.2 into dev. by `@jmchilton <https://github.com/jmchilton>`_ in `#19273 <https://github.com/galaxyproject/galaxy/pull/19273>`_
482
+ * Fix package versions by `@jdavcs <https://github.com/jdavcs>`_ in `#19566 <https://github.com/galaxyproject/galaxy/pull/19566>`_
483
+ * Merge 24.2 into dev by `@jdavcs <https://github.com/jdavcs>`_ in `#19590 <https://github.com/galaxyproject/galaxy/pull/19590>`_
484
+ * Bump @babel/runtime-corejs3 from 7.23.2 to 7.26.10 in /client by `@dependabot[bot] <https://github.com/dependabot[bot]>`_ in `#19788 <https://github.com/galaxyproject/galaxy/pull/19788>`_
485
+ * Rebuild API schema for latest dev. by `@jmchilton <https://github.com/jmchilton>`_ in `#19789 <https://github.com/galaxyproject/galaxy/pull/19789>`_
486
+ * Make job cache generally available by `@dannon <https://github.com/dannon>`_ in `#19798 <https://github.com/galaxyproject/galaxy/pull/19798>`_
487
+ * Fix workflow license component typing by `@guerler <https://github.com/guerler>`_ in `#19878 <https://github.com/galaxyproject/galaxy/pull/19878>`_
488
+ * Fix import and update_page type signature by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19932 <https://github.com/galaxyproject/galaxy/pull/19932>`_
489
+ * Merge 24.2 into dev by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19933 <https://github.com/galaxyproject/galaxy/pull/19933>`_
490
+ * Log controller exceptions by `@natefoo <https://github.com/natefoo>`_ in `#19974 <https://github.com/galaxyproject/galaxy/pull/19974>`_
491
+ * Fix copying job output from discovered outputs by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19999 <https://github.com/galaxyproject/galaxy/pull/19999>`_
492
+ * Add env var to skip CircularDependencyPlugin in development mode by `@dannon <https://github.com/dannon>`_ in `#20038 <https://github.com/galaxyproject/galaxy/pull/20038>`_
493
+ * Bump h11 from 0.14.0 to 0.16.0 in /lib/galaxy/dependencies by `@dependabot[bot] <https://github.com/dependabot[bot]>`_ in `#20088 <https://github.com/galaxyproject/galaxy/pull/20088>`_
494
+ * Fix formatting in webapp and client/install.py by `@dannon <https://github.com/dannon>`_ in `#20185 <https://github.com/galaxyproject/galaxy/pull/20185>`_
495
+ * Bump default milestone to 25.1 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20189 <https://github.com/galaxyproject/galaxy/pull/20189>`_
496
+ * Bump axios from 1.7.4 to 1.8.2 in /client by `@dependabot[bot] <https://github.com/dependabot[bot]>`_ in `#20205 <https://github.com/galaxyproject/galaxy/pull/20205>`_
497
+ * Bug fixes around wizard usage. by `@jmchilton <https://github.com/jmchilton>`_ in `#20224 <https://github.com/galaxyproject/galaxy/pull/20224>`_
498
+ * Bug fix - allow file drops into PasteData widget. by `@jmchilton <https://github.com/jmchilton>`_ in `#20232 <https://github.com/galaxyproject/galaxy/pull/20232>`_
499
+ * Only show custom tool editor in activity bar settings when user has access by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20247 <https://github.com/galaxyproject/galaxy/pull/20247>`_
500
+ * Fix job rerun for dynamic tools by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20259 <https://github.com/galaxyproject/galaxy/pull/20259>`_
501
+ * Add 25.0 migration tags by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20265 <https://github.com/galaxyproject/galaxy/pull/20265>`_
502
+ * Update version to 25.0.rc1 by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20267 <https://github.com/galaxyproject/galaxy/pull/20267>`_
503
+ * Bug fix - auto-pairing step not connected to collection builder in wizard. by `@jmchilton <https://github.com/jmchilton>`_ in `#20345 <https://github.com/galaxyproject/galaxy/pull/20345>`_
504
+ * Fix minor IT panel/display issues by `@dannon <https://github.com/dannon>`_ in `#20404 <https://github.com/galaxyproject/galaxy/pull/20404>`_
505
+ * Rename vitessce_json file_ext to vitessce.json by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20473 <https://github.com/galaxyproject/galaxy/pull/20473>`_
506
+
507
+ -------------------
508
+ 24.2.4 (2025-06-17)
509
+ -------------------
510
+
511
+
512
+ =========
513
+ Bug fixes
514
+ =========
515
+
516
+ * Fix #19515 - invalid citation handling changed with 24.2. by `@jmchilton <https://github.com/jmchilton>`_ in `#19716 <https://github.com/galaxyproject/galaxy/pull/19716>`_
517
+ * Fix collection builder input states by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19797 <https://github.com/galaxyproject/galaxy/pull/19797>`_
518
+ * Reduce default framework tool test timeout to 60 seconds by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19819 <https://github.com/galaxyproject/galaxy/pull/19819>`_
519
+ * Backport #19810: Fix workflow param tests not updating param type. by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19820 <https://github.com/galaxyproject/galaxy/pull/19820>`_
520
+ * Fix various job concurrency limit issues by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19824 <https://github.com/galaxyproject/galaxy/pull/19824>`_
521
+ * Do not reorder options in FormSelect component when multiselect disabled by `@jdavcs <https://github.com/jdavcs>`_ in `#19837 <https://github.com/galaxyproject/galaxy/pull/19837>`_
522
+ * Decode/encode FormDirectory paths to allow spaces (and other characters) by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19841 <https://github.com/galaxyproject/galaxy/pull/19841>`_
523
+ * Try to recover from recurring activation link error by `@jdavcs <https://github.com/jdavcs>`_ in `#19844 <https://github.com/galaxyproject/galaxy/pull/19844>`_
524
+ * Add spacing between workflow author and invocation count by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19849 <https://github.com/galaxyproject/galaxy/pull/19849>`_
525
+ * Fix default ordering of items sorted by name by `@jdavcs <https://github.com/jdavcs>`_ in `#19853 <https://github.com/galaxyproject/galaxy/pull/19853>`_
526
+ * Handle directories with percents directories with export_remote.xml. by `@jmchilton <https://github.com/jmchilton>`_ in `#19865 <https://github.com/galaxyproject/galaxy/pull/19865>`_
527
+ * Fix drag and drop for dataset collection elements by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19866 <https://github.com/galaxyproject/galaxy/pull/19866>`_
528
+ * Don't collect unnamed outputs twice in extended metadata mode by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19868 <https://github.com/galaxyproject/galaxy/pull/19868>`_
529
+ * Check if index exists before creating by `@jdavcs <https://github.com/jdavcs>`_ in `#19873 <https://github.com/galaxyproject/galaxy/pull/19873>`_
530
+ * Lazy-load invocation step jobs as needed by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19877 <https://github.com/galaxyproject/galaxy/pull/19877>`_
531
+ * Fix tabular metadata setting on pulsar with remote metadata by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19891 <https://github.com/galaxyproject/galaxy/pull/19891>`_
532
+ * Skip ``data_meta`` filter in run form by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19895 <https://github.com/galaxyproject/galaxy/pull/19895>`_
533
+ * Drop unused alembic-utils from galaxy-data package requirements by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19896 <https://github.com/galaxyproject/galaxy/pull/19896>`_
534
+ * Fix duplicate extensions for data inputs by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19903 <https://github.com/galaxyproject/galaxy/pull/19903>`_
535
+ * Skip implicit HDA conversions in DataToolParameter options by `@davelopez <https://github.com/davelopez>`_ in `#19911 <https://github.com/galaxyproject/galaxy/pull/19911>`_
536
+ * Fix duplicate entries when using drag and drop in multiple mode by `@davelopez <https://github.com/davelopez>`_ in `#19913 <https://github.com/galaxyproject/galaxy/pull/19913>`_
537
+ * Let pysam use extra threads available in job by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19917 <https://github.com/galaxyproject/galaxy/pull/19917>`_
538
+ * Handle special charater in raw SQL by `@jdavcs <https://github.com/jdavcs>`_ in `#19925 <https://github.com/galaxyproject/galaxy/pull/19925>`_
539
+ * Report TestCaseValidation as linter error for 24.2 and above by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19928 <https://github.com/galaxyproject/galaxy/pull/19928>`_
540
+ * Better interactive tool entry point query by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19942 <https://github.com/galaxyproject/galaxy/pull/19942>`_
541
+ * Drop unnecessary job cache job subquery by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19945 <https://github.com/galaxyproject/galaxy/pull/19945>`_
542
+ * Use ``make_fast_zipfile`` directly by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19947 <https://github.com/galaxyproject/galaxy/pull/19947>`_
543
+ * Fix attempt restriction on multiple connections by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19948 <https://github.com/galaxyproject/galaxy/pull/19948>`_
544
+ * Fix various parameter validation issues. by `@jmchilton <https://github.com/jmchilton>`_ in `#19949 <https://github.com/galaxyproject/galaxy/pull/19949>`_
545
+ * Sort intersected options by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19953 <https://github.com/galaxyproject/galaxy/pull/19953>`_
546
+ * Do not print OIDC access tokens to the logs by `@kysrpex <https://github.com/kysrpex>`_ in `#19966 <https://github.com/galaxyproject/galaxy/pull/19966>`_
547
+ * Renew OIDC access tokens using valid refresh tokens by `@kysrpex <https://github.com/kysrpex>`_ in `#19967 <https://github.com/galaxyproject/galaxy/pull/19967>`_
548
+ * Fix bug in psa-authnz redirect handling by `@dannon <https://github.com/dannon>`_ in `#19968 <https://github.com/galaxyproject/galaxy/pull/19968>`_
549
+ * Add missing job state history entry for queued state by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19977 <https://github.com/galaxyproject/galaxy/pull/19977>`_
550
+ * Restrict job cache to terminal jobs (and other fixes) by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19978 <https://github.com/galaxyproject/galaxy/pull/19978>`_
551
+ * Do not display default labels obscuring selectable options in a vue-multiselect component by `@jdavcs <https://github.com/jdavcs>`_ in `#19981 <https://github.com/galaxyproject/galaxy/pull/19981>`_
552
+ * Fix dynamic filter option access when building command line by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19982 <https://github.com/galaxyproject/galaxy/pull/19982>`_
553
+ * Always set copy_elements to true by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19985 <https://github.com/galaxyproject/galaxy/pull/19985>`_
554
+ * ChatGXY Error Handling by `@dannon <https://github.com/dannon>`_ in `#19987 <https://github.com/galaxyproject/galaxy/pull/19987>`_
555
+ * Ensure job states are fetched in invocation view by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20010 <https://github.com/galaxyproject/galaxy/pull/20010>`_
556
+ * Renew access tokens from PSA using valid refresh tokens by `@kysrpex <https://github.com/kysrpex>`_ in `#20040 <https://github.com/galaxyproject/galaxy/pull/20040>`_
557
+ * Fix edit permission for datasets delete button in storage dashboard overview by location by `@itisAliRH <https://github.com/itisAliRH>`_ in `#20066 <https://github.com/galaxyproject/galaxy/pull/20066>`_
558
+ * Job cache backports by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20078 <https://github.com/galaxyproject/galaxy/pull/20078>`_
559
+ * Fix `mulled-search --destination quay`, add index reuse by `@natefoo <https://github.com/natefoo>`_ in `#20107 <https://github.com/galaxyproject/galaxy/pull/20107>`_
560
+ * Fix edam selenium test by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20134 <https://github.com/galaxyproject/galaxy/pull/20134>`_
561
+ * Skip ``param_value`` filter if ref value is runtime value by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20144 <https://github.com/galaxyproject/galaxy/pull/20144>`_
562
+ * Fix ``DataCollectionParameterModel`` factory by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20164 <https://github.com/galaxyproject/galaxy/pull/20164>`_
563
+ * Fix invocation failure dataset reference by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20200 <https://github.com/galaxyproject/galaxy/pull/20200>`_
564
+ * Conditionally import from `galaxy.config` in `galaxy.model.mapping` if `TYPE_CHECKING` by `@natefoo <https://github.com/natefoo>`_ in `#20209 <https://github.com/galaxyproject/galaxy/pull/20209>`_
565
+ * Refactor display_as URL generation for UCSC links and fix to remove double slashes in URL by `@natefoo <https://github.com/natefoo>`_ in `#20239 <https://github.com/galaxyproject/galaxy/pull/20239>`_
566
+ * Fall back to name in job summary if no input label given by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20258 <https://github.com/galaxyproject/galaxy/pull/20258>`_
567
+ * Fix WF Run RO-Crate logo width in Firefox by `@davelopez <https://github.com/davelopez>`_ in `#20305 <https://github.com/galaxyproject/galaxy/pull/20305>`_
568
+ * Fix searching roles in admin UI by `@jdavcs <https://github.com/jdavcs>`_ in `#20394 <https://github.com/galaxyproject/galaxy/pull/20394>`_
569
+ * Skip validation of expression.json input in workflow parameter validator by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20412 <https://github.com/galaxyproject/galaxy/pull/20412>`_
570
+ * Fix unit tests returning values by `@nsoranzo <https://github.com/nsoranzo>`_ in `#20413 <https://github.com/galaxyproject/galaxy/pull/20413>`_
571
+ * Fix ``mull_targets()`` with mamba 2.x by `@nsoranzo <https://github.com/nsoranzo>`_ in `#20416 <https://github.com/galaxyproject/galaxy/pull/20416>`_
572
+ * Make response header values strings by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20475 <https://github.com/galaxyproject/galaxy/pull/20475>`_
573
+ * Fix legacy get_metadata_file controller route by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20477 <https://github.com/galaxyproject/galaxy/pull/20477>`_
574
+ * Prevent running datatype autodetect on purged datasets by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20479 <https://github.com/galaxyproject/galaxy/pull/20479>`_
575
+ * Link workflow invocation outputs upon importing invocation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#20485 <https://github.com/galaxyproject/galaxy/pull/20485>`_
576
+ * Make optional edam-ontology in datatypes registry optional by `@natefoo <https://github.com/natefoo>`_ in `#20492 <https://github.com/galaxyproject/galaxy/pull/20492>`_
577
+
578
+ ============
579
+ Enhancements
580
+ ============
581
+
582
+ * Bump up max_peek_size to 50MB by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19823 <https://github.com/galaxyproject/galaxy/pull/19823>`_
583
+ * Point install_requires at requirements.txt file by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19864 <https://github.com/galaxyproject/galaxy/pull/19864>`_
584
+ * Fix Invenio file source downloads not working with some Invenio instances by `@davelopez <https://github.com/davelopez>`_ in `#19930 <https://github.com/galaxyproject/galaxy/pull/19930>`_
585
+ * Update selectable object stores after adding or editing them by `@davelopez <https://github.com/davelopez>`_ in `#19992 <https://github.com/galaxyproject/galaxy/pull/19992>`_
586
+
587
+ =============
588
+ Other changes
589
+ =============
590
+
591
+ * Backport parts of #19659 by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19805 <https://github.com/galaxyproject/galaxy/pull/19805>`_
592
+ * Remove unused client route for standalone wizard interface by `@dannon <https://github.com/dannon>`_ in `#19836 <https://github.com/galaxyproject/galaxy/pull/19836>`_
593
+ * Publish pre-built client with (point-)release by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19879 <https://github.com/galaxyproject/galaxy/pull/19879>`_
594
+ * Update dev package version in meta package by `@natefoo <https://github.com/natefoo>`_ in `#20159 <https://github.com/galaxyproject/galaxy/pull/20159>`_
595
+
596
+ -------------------
597
+ 19.9.0 (2019-11-21)
598
+ -------------------
599
+
600
+ * Initial import from dev branch of Galaxy during 19.09 development cycle.