gaard-api 0.1.0__tar.gz → 0.1.1__tar.gz

gaard_api-0.1.1/MANIFEST.in

@@ -0,0 +1,2 @@
+global-exclude *.py[cod]
+global-exclude __pycache__/*

{gaard_api-0.1.0 → gaard_api-0.1.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: gaard-api
-Version: 0.1.0
+Version: 0.1.1
 Summary: GAARD backend web services providing admin interface
 Requires-Python: >=3.11
 Description-Content-Type: text/markdown
@@ -34,11 +34,19 @@ For more informacion see https://github.com/pkroliszewski/gaard
 After installation, start it with:
 
 ```bash
+gaard-core install-example-database
 gaard-core start
 ```
 
-The command accepts `--host`, `--port`, and `--reload`. By default the API is
-available at `http://localhost:8000` and the admin application at
+`gaard-core install-example-database` creates the bundled Medical POC SQLite
+database at `examples/medical-poc/demo.db` in the current working directory,
+registers it as the active `default` datasource in `metadata.db`, and matches
+the default datasource URL. Use
+`gaard-core install-example-database --output /path/to/demo.db` to place it
+elsewhere; the command prints the SQLite datasource URL saved in metadata.
+
+`gaard-core start` accepts `--host`, `--port`, and `--reload`. By default the
+API is available at `http://localhost:8000` and the admin application at
 `http://localhost:8000/admin`.
 
 `gaard-api start` is an alias. `gaard admin` remains available for compatibility.

{gaard_api-0.1.0 → gaard_api-0.1.1}/README.md

@@ -13,11 +13,19 @@ For more informacion see https://github.com/pkroliszewski/gaard
 After installation, start it with:
 
 ```bash
+gaard-core install-example-database
 gaard-core start
 ```
 
-The command accepts `--host`, `--port`, and `--reload`. By default the API is
-available at `http://localhost:8000` and the admin application at
+`gaard-core install-example-database` creates the bundled Medical POC SQLite
+database at `examples/medical-poc/demo.db` in the current working directory,
+registers it as the active `default` datasource in `metadata.db`, and matches
+the default datasource URL. Use
+`gaard-core install-example-database --output /path/to/demo.db` to place it
+elsewhere; the command prints the SQLite datasource URL saved in metadata.
+
+`gaard-core start` accepts `--host`, `--port`, and `--reload`. By default the
+API is available at `http://localhost:8000` and the admin application at
 `http://localhost:8000/admin`.
 
 `gaard-api start` is an alias. `gaard admin` remains available for compatibility.

{gaard_api-0.1.0 → gaard_api-0.1.1}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "gaard-api"
-version = "0.1.0"
+version = "0.1.1"
 description = "GAARD backend web services providing admin interface"
 readme = "README.md"
 requires-python = ">=3.11"
@@ -44,7 +44,7 @@ gaard-core = "gaard_api.server_cli:main"
 admin = "gaard_api.cli_commands:register"
 
 [tool.setuptools]
-include-package-data = true
+include-package-data = false
 
 [tool.setuptools.packages.find]
 where = ["src"]
@@ -52,6 +52,14 @@ where = ["src"]
 [tool.setuptools.package-data]
 gaard_api = [
     "admin-web/**/*",
+    "example_data/medical_poc/*.sql",
+]
+
+[tool.setuptools.exclude-package-data]
+gaard_api = [
+    "**/__pycache__/*",
+    "**/*.pyc",
+    "**/*.pyo",
 ]
 
 [tool.ruff]

{gaard_api-0.1.0 → gaard_api-0.1.1}/src/gaard_api/admin/database.py

@@ -190,22 +190,6 @@ def seed_prompts(session: Session) -> None:
 def seed_datasource_connectors(session: Session) -> None:
     migrate_postgres_sql_dialect(session)
 
-    default_connector = session.scalar(
-        select(DatasourceConnector).where(DatasourceConnector.connector_key == "default")
-    )
-
-    if default_connector is None:
-        session.add(
-            DatasourceConnector(
-                connector_key="default",
-                name="Medical POC SQLite",
-                database_type="sqlite",
-                database_url=settings.gaard_datasource_url,
-                sql_dialect=settings.gaard_sql_dialect,
-                active=True,
-            )
-        )
-
     metadata_connector = session.scalar(
         select(DatasourceConnector).where(DatasourceConnector.connector_key == "metadata-db")
     )
@@ -230,19 +214,6 @@ def seed_datasource_connectors(session: Session) -> None:
         metadata_connector.active = False
         metadata_connector.updated_by = "system"
 
-    active_user_connector = session.scalar(
-        select(DatasourceConnector).where(
-            DatasourceConnector.connector_key != "metadata-db",
-            DatasourceConnector.active.is_(True),
-        )
-    )
-    default_connector = session.scalar(
-        select(DatasourceConnector).where(DatasourceConnector.connector_key == "default")
-    )
-
-    if active_user_connector is None and default_connector is not None:
-        default_connector.active = True
-
 
 def infer_datasource_type(database_url: str) -> tuple[str, str]:
     if database_url.startswith("sqlite"):

gaard_api-0.1.1/src/gaard_api/example_data/__init__.py

@@ -0,0 +1 @@
+"""Packaged GAARD example data."""

gaard_api-0.1.1/src/gaard_api/example_data/medical_poc/__init__.py

@@ -0,0 +1 @@
+"""Medical POC SQLite example data."""

gaard_api-0.1.1/src/gaard_api/example_data/medical_poc/schema.sql

@@ -0,0 +1,140 @@
+PRAGMA foreign_keys = OFF;
+
+DROP TABLE IF EXISTS payments;
+DROP TABLE IF EXISTS lab_results;
+DROP TABLE IF EXISTS prescriptions;
+DROP TABLE IF EXISTS appointment_procedures;
+DROP TABLE IF EXISTS appointment_diagnoses;
+DROP TABLE IF EXISTS medical_procedures;
+DROP TABLE IF EXISTS diagnoses;
+DROP TABLE IF EXISTS appointments;
+DROP TABLE IF EXISTS doctors;
+DROP TABLE IF EXISTS patients;
+
+CREATE TABLE patients (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    first_name TEXT NOT NULL,
+    last_name TEXT NOT NULL,
+    status TEXT NOT NULL,
+    sex TEXT NOT NULL,
+    birth_date TEXT,
+    city TEXT NOT NULL,
+    phone TEXT,
+    email TEXT,
+    insurance_provider TEXT NOT NULL,
+    risk_group TEXT NOT NULL,
+    created_at TEXT NOT NULL
+);
+
+CREATE TABLE doctors (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    first_name TEXT NOT NULL,
+    last_name TEXT NOT NULL,
+    specialization TEXT NOT NULL,
+    license_number TEXT NOT NULL UNIQUE,
+    clinic_location TEXT NOT NULL,
+    room TEXT NOT NULL,
+    hire_date TEXT NOT NULL,
+    active INTEGER NOT NULL
+);
+
+CREATE TABLE appointments (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    patient_id INTEGER NOT NULL,
+    doctor_id INTEGER NOT NULL,
+    appointment_date TEXT NOT NULL,
+    appointment_time TEXT NOT NULL,
+    duration_minutes INTEGER NOT NULL,
+    status TEXT NOT NULL,
+    visit_type TEXT NOT NULL,
+    priority TEXT NOT NULL,
+    reason TEXT NOT NULL,
+    check_in_at TEXT,
+    notes TEXT,
+    FOREIGN KEY (patient_id) REFERENCES patients(id),
+    FOREIGN KEY (doctor_id) REFERENCES doctors(id)
+);
+
+CREATE TABLE diagnoses (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    icd10_code TEXT NOT NULL UNIQUE,
+    name TEXT NOT NULL,
+    category TEXT NOT NULL,
+    chronic INTEGER NOT NULL
+);
+
+CREATE TABLE appointment_diagnoses (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    appointment_id INTEGER NOT NULL,
+    diagnosis_id INTEGER NOT NULL,
+    is_primary INTEGER NOT NULL,
+    notes TEXT,
+    FOREIGN KEY (appointment_id) REFERENCES appointments(id),
+    FOREIGN KEY (diagnosis_id) REFERENCES diagnoses(id)
+);
+
+CREATE TABLE medical_procedures (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    procedure_code TEXT NOT NULL UNIQUE,
+    name TEXT NOT NULL,
+    specialization TEXT NOT NULL,
+    base_price REAL NOT NULL
+);
+
+CREATE TABLE appointment_procedures (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    appointment_id INTEGER NOT NULL,
+    procedure_id INTEGER NOT NULL,
+    quantity INTEGER NOT NULL,
+    price REAL NOT NULL,
+    result_summary TEXT,
+    FOREIGN KEY (appointment_id) REFERENCES appointments(id),
+    FOREIGN KEY (procedure_id) REFERENCES medical_procedures(id)
+);
+
+CREATE TABLE prescriptions (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    appointment_id INTEGER NOT NULL,
+    medication_name TEXT NOT NULL,
+    dosage TEXT NOT NULL,
+    frequency TEXT NOT NULL,
+    days_supply INTEGER NOT NULL,
+    issued_at TEXT NOT NULL,
+    FOREIGN KEY (appointment_id) REFERENCES appointments(id)
+);
+
+CREATE TABLE lab_results (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    appointment_id INTEGER NOT NULL,
+    test_name TEXT NOT NULL,
+    result_value REAL NOT NULL,
+    unit TEXT NOT NULL,
+    reference_range TEXT NOT NULL,
+    abnormal_flag TEXT NOT NULL,
+    resulted_at TEXT NOT NULL,
+    FOREIGN KEY (appointment_id) REFERENCES appointments(id)
+);
+
+CREATE TABLE payments (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    appointment_id INTEGER NOT NULL,
+    payer_type TEXT NOT NULL,
+    amount REAL NOT NULL,
+    currency TEXT NOT NULL,
+    status TEXT NOT NULL,
+    payment_method TEXT,
+    paid_at TEXT,
+    FOREIGN KEY (appointment_id) REFERENCES appointments(id)
+);
+
+CREATE INDEX idx_patients_status ON patients(status);
+CREATE INDEX idx_patients_city ON patients(city);
+CREATE INDEX idx_doctors_specialization ON doctors(specialization);
+CREATE INDEX idx_appointments_date ON appointments(appointment_date);
+CREATE INDEX idx_appointments_patient ON appointments(patient_id);
+CREATE INDEX idx_appointments_doctor ON appointments(doctor_id);
+CREATE INDEX idx_appointment_diagnoses_appointment ON appointment_diagnoses(appointment_id);
+CREATE INDEX idx_appointment_procedures_appointment ON appointment_procedures(appointment_id);
+CREATE INDEX idx_payments_status ON payments(status);
+
+PRAGMA foreign_keys = ON;