fvs-python 0.2.3__tar.gz → 0.2.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (355) hide show
  1. {fvs_python-0.2.3/src/fvs_python.egg-info → fvs_python-0.2.4}/PKG-INFO +9 -2
  2. {fvs_python-0.2.3 → fvs_python-0.2.4}/README.md +7 -1
  3. {fvs_python-0.2.3 → fvs_python-0.2.4}/pyproject.toml +3 -1
  4. {fvs_python-0.2.3 → fvs_python-0.2.4/src/fvs_python.egg-info}/PKG-INFO +9 -2
  5. fvs_python-0.2.4/src/fvs_python.egg-info/SOURCES.txt +335 -0
  6. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/fvs_python.egg-info/requires.txt +1 -0
  7. fvs_python-0.2.4/src/pyfvs/__init__.py +409 -0
  8. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/bark_ratio.py +54 -37
  9. fvs_python-0.2.4/src/pyfvs/ca_diameter_growth.py +478 -0
  10. fvs_python-0.2.4/src/pyfvs/cfg/ca/ca_diameter_growth_coefficients.json +642 -0
  11. fvs_python-0.2.4/src/pyfvs/cfg/ca/ca_height_diameter_coefficients.json +518 -0
  12. fvs_python-0.2.4/src/pyfvs/cfg/ca/ca_species_config.yaml +189 -0
  13. fvs_python-0.2.4/src/pyfvs/cfg/ca/species/df_douglas_fir.yaml +63 -0
  14. fvs_python-0.2.4/src/pyfvs/cfg/ca/species/gs_giant_sequoia.yaml +63 -0
  15. fvs_python-0.2.4/src/pyfvs/cfg/ca/species/jp_jeffrey_pine.yaml +63 -0
  16. fvs_python-0.2.4/src/pyfvs/cfg/ca/species/pp_ponderosa_pine.yaml +63 -0
  17. fvs_python-0.2.4/src/pyfvs/cfg/ca/species/rw_redwood.yaml +63 -0
  18. fvs_python-0.2.4/src/pyfvs/cfg/ca/species/wf_white_fir.yaml +63 -0
  19. fvs_python-0.2.4/src/pyfvs/cfg/cs/cs_diameter_growth_coefficients.json +1548 -0
  20. fvs_python-0.2.4/src/pyfvs/cfg/cs/cs_height_diameter_coefficients.json +782 -0
  21. fvs_python-0.2.4/src/pyfvs/cfg/cs/cs_species_config.yaml +542 -0
  22. fvs_python-0.2.4/src/pyfvs/cfg/cs/species/bc_black_cherry.yaml +35 -0
  23. fvs_python-0.2.4/src/pyfvs/cfg/cs/species/rm_red_maple.yaml +35 -0
  24. fvs_python-0.2.4/src/pyfvs/cfg/cs/species/ro_northern_red_oak.yaml +35 -0
  25. fvs_python-0.2.4/src/pyfvs/cfg/cs/species/sh_shagbark_hickory.yaml +35 -0
  26. fvs_python-0.2.4/src/pyfvs/cfg/cs/species/sm_sugar_maple.yaml +35 -0
  27. fvs_python-0.2.4/src/pyfvs/cfg/cs/species/wn_black_walnut.yaml +35 -0
  28. fvs_python-0.2.4/src/pyfvs/cfg/cs/species/wo_white_oak.yaml +35 -0
  29. fvs_python-0.2.4/src/pyfvs/cfg/cs/species/yp_tuliptree.yaml +35 -0
  30. fvs_python-0.2.4/src/pyfvs/cfg/ls/ls_diameter_growth_coefficients.json +1151 -0
  31. fvs_python-0.2.4/src/pyfvs/cfg/ls/ls_height_diameter_coefficients.json +616 -0
  32. fvs_python-0.2.4/src/pyfvs/cfg/ls/ls_mortality_coefficients.json +78 -0
  33. fvs_python-0.2.4/src/pyfvs/cfg/ls/ls_species_config.yaml +381 -0
  34. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/ab_american_beech.yaml +35 -0
  35. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/ac_american_chestnut.yaml +35 -0
  36. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/ae_american_elm.yaml +35 -0
  37. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/ah_american_hornbeam.yaml +35 -0
  38. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/ap_apple.yaml +35 -0
  39. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/ba_black_ash.yaml +35 -0
  40. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/bc_black_cherry.yaml +35 -0
  41. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/be_beech.yaml +35 -0
  42. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/bf_balsam_fir.yaml +35 -0
  43. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/bg_black_gum.yaml +35 -0
  44. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/bh_bitternut_hickory.yaml +35 -0
  45. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/bk_birch_species.yaml +35 -0
  46. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/bl_black_locust.yaml +35 -0
  47. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/bm_black_maple.yaml +35 -0
  48. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/bn_butternut.yaml +35 -0
  49. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/bo_black_oak.yaml +35 -0
  50. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/bp_balsam_poplar.yaml +35 -0
  51. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/br_bur_oak.yaml +35 -0
  52. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/bs_black_spruce.yaml +35 -0
  53. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/bt_bigtooth_aspen.yaml +35 -0
  54. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/bw_black_willow.yaml +35 -0
  55. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/cc_chokecherry.yaml +35 -0
  56. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/ck_chinkapin_oak.yaml +35 -0
  57. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/dm_boxelder.yaml +35 -0
  58. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/dw_dogwood.yaml +35 -0
  59. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/ec_eastern_cottonwood.yaml +35 -0
  60. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/eh_eastern_hemlock.yaml +35 -0
  61. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/ga_green_ash.yaml +35 -0
  62. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/hh_hophornbeam.yaml +35 -0
  63. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/hk_hickory_species.yaml +35 -0
  64. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/ht_hackberry.yaml +35 -0
  65. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/jp_jack_pine.yaml +35 -0
  66. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/ma_mulberry.yaml +35 -0
  67. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/mm_mountain_maple.yaml +35 -0
  68. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/np_norway_pine.yaml +35 -0
  69. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/ns_norway_spruce.yaml +35 -0
  70. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/oh_other_hardwood.yaml +35 -0
  71. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/os_other_softwood.yaml +35 -0
  72. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/pb_paper_birch.yaml +35 -0
  73. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/ph_pignut_hickory.yaml +35 -0
  74. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/pl_plum_species.yaml +35 -0
  75. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/pr_pin_cherry.yaml +35 -0
  76. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/qa_quaking_aspen.yaml +35 -0
  77. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/rc_eastern_redcedar.yaml +35 -0
  78. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/re_slippery_elm.yaml +35 -0
  79. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/rl_rock_elm.yaml +35 -0
  80. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/rm_red_maple.yaml +35 -0
  81. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/rn_red_pine.yaml +35 -0
  82. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/ro_northern_red_oak.yaml +35 -0
  83. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/rp_red_pine.yaml +35 -0
  84. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/sc_scotch_pine.yaml +35 -0
  85. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/sh_shagbark_hickory.yaml +35 -0
  86. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/sm_sugar_maple.yaml +35 -0
  87. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/ss_sassafras.yaml +35 -0
  88. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/st_striped_maple.yaml +35 -0
  89. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/sv_silver_maple.yaml +35 -0
  90. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/sw_swamp_white_oak.yaml +35 -0
  91. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/sy_sycamore.yaml +35 -0
  92. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/ta_tamarack.yaml +35 -0
  93. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/wa_white_ash.yaml +35 -0
  94. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/wc_white_cedar.yaml +35 -0
  95. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/wi_willow.yaml +35 -0
  96. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/wn_black_walnut.yaml +35 -0
  97. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/wo_white_oak.yaml +35 -0
  98. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/wp_white_pine.yaml +35 -0
  99. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/ws_white_spruce.yaml +35 -0
  100. fvs_python-0.2.4/src/pyfvs/cfg/ls/species/yb_yellow_birch.yaml +35 -0
  101. fvs_python-0.2.4/src/pyfvs/cfg/ne/ne_diameter_growth_coefficients.json +116 -0
  102. fvs_python-0.2.4/src/pyfvs/cfg/ne/ne_height_diameter_coefficients.json +114 -0
  103. fvs_python-0.2.4/src/pyfvs/cfg/ne/ne_species_config.yaml +592 -0
  104. fvs_python-0.2.4/src/pyfvs/cfg/ne/species/bc_black_cherry.yaml +26 -0
  105. fvs_python-0.2.4/src/pyfvs/cfg/ne/species/bf_balsam_fir.yaml +26 -0
  106. fvs_python-0.2.4/src/pyfvs/cfg/ne/species/rm_red_maple.yaml +26 -0
  107. fvs_python-0.2.4/src/pyfvs/cfg/ne/species/ro_northern_red_oak.yaml +26 -0
  108. fvs_python-0.2.4/src/pyfvs/cfg/ne/species/rs_red_spruce.yaml +26 -0
  109. fvs_python-0.2.4/src/pyfvs/cfg/ne/species/sm_sugar_maple.yaml +26 -0
  110. fvs_python-0.2.4/src/pyfvs/cfg/ne/species/wp_white_pine.yaml +26 -0
  111. fvs_python-0.2.4/src/pyfvs/cfg/ne/species/yb_yellow_birch.yaml +26 -0
  112. fvs_python-0.2.4/src/pyfvs/cfg/oc/oc_diameter_growth_coefficients.json +306 -0
  113. fvs_python-0.2.4/src/pyfvs/cfg/oc/oc_height_diameter_coefficients.json +60 -0
  114. fvs_python-0.2.4/src/pyfvs/cfg/oc/oc_species_config.yaml +282 -0
  115. fvs_python-0.2.4/src/pyfvs/cfg/oc/species/df.yaml +39 -0
  116. fvs_python-0.2.4/src/pyfvs/cfg/op/op_diameter_growth_coefficients.json +355 -0
  117. fvs_python-0.2.4/src/pyfvs/cfg/op/op_height_diameter_coefficients.json +182 -0
  118. fvs_python-0.2.4/src/pyfvs/cfg/op/op_species_config.yaml +115 -0
  119. fvs_python-0.2.4/src/pyfvs/cfg/op/species/df_douglas_fir.yaml +70 -0
  120. fvs_python-0.2.4/src/pyfvs/cfg/op/species/ra_red_alder.yaml +71 -0
  121. fvs_python-0.2.4/src/pyfvs/cfg/op/species/rc_western_red_cedar.yaml +69 -0
  122. fvs_python-0.2.4/src/pyfvs/cfg/op/species/wh_western_hemlock.yaml +69 -0
  123. fvs_python-0.2.4/src/pyfvs/cfg/pn/pn_diameter_growth_coefficients.json +482 -0
  124. fvs_python-0.2.4/src/pyfvs/cfg/pn/pn_height_diameter_coefficients.json +366 -0
  125. fvs_python-0.2.4/src/pyfvs/cfg/pn/pn_species_config.yaml +148 -0
  126. fvs_python-0.2.4/src/pyfvs/cfg/pn/species/df_douglas_fir.yaml +55 -0
  127. fvs_python-0.2.4/src/pyfvs/cfg/pn/species/rc_western_red_cedar.yaml +55 -0
  128. fvs_python-0.2.4/src/pyfvs/cfg/pn/species/wh_western_hemlock.yaml +55 -0
  129. fvs_python-0.2.4/src/pyfvs/cfg/sn_diameter_growth_coefficients.json +230 -0
  130. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/sn_small_tree_height_growth.json +8 -18
  131. fvs_python-0.2.4/src/pyfvs/cfg/species/ab_american_beech.yaml +105 -0
  132. fvs_python-0.2.4/src/pyfvs/cfg/species/ap_apple.yaml +104 -0
  133. fvs_python-0.2.4/src/pyfvs/cfg/species/bb_american_basswood.yaml +148 -0
  134. fvs_python-0.2.4/src/pyfvs/cfg/species/bj_blackjack_oak.yaml +117 -0
  135. fvs_python-0.2.4/src/pyfvs/cfg/species/bk_black_oak.yaml +153 -0
  136. fvs_python-0.2.4/src/pyfvs/cfg/species/bo_blackjack_oak.yaml +148 -0
  137. fvs_python-0.2.4/src/pyfvs/cfg/species/ca_catalpa.yaml +104 -0
  138. fvs_python-0.2.4/src/pyfvs/cfg/species/cb_cherrybark_oak.yaml +162 -0
  139. fvs_python-0.2.4/src/pyfvs/cfg/species/ck_chinkapin_oak.yaml +147 -0
  140. fvs_python-0.2.4/src/pyfvs/cfg/species/co_atlantic_white_cedar.yaml +148 -0
  141. fvs_python-0.2.4/src/pyfvs/cfg/species/el_elm.yaml +105 -0
  142. fvs_python-0.2.4/src/pyfvs/cfg/species/hh_hophornbeam.yaml +104 -0
  143. fvs_python-0.2.4/src/pyfvs/cfg/species/hy_american_holly.yaml +104 -0
  144. fvs_python-0.2.4/src/pyfvs/cfg/species/lo_live_oak.yaml +147 -0
  145. fvs_python-0.2.4/src/pyfvs/cfg/species/mb_mulberry.yaml +104 -0
  146. fvs_python-0.2.4/src/pyfvs/cfg/species/ml_bigleaf_magnolia.yaml +104 -0
  147. fvs_python-0.2.4/src/pyfvs/cfg/species/mv_sweetbay.yaml +104 -0
  148. fvs_python-0.2.4/src/pyfvs/cfg/species/po_post_oak.yaml +160 -0
  149. fvs_python-0.2.4/src/pyfvs/cfg/species/qs_oak_species.yaml +148 -0
  150. fvs_python-0.2.4/src/pyfvs/cfg/species/rl_slippery_elm.yaml +104 -0
  151. fvs_python-0.2.3/src/pyfvs/cfg/species/ro_eastern_hemlock.yaml → fvs_python-0.2.4/src/pyfvs/cfg/species/ro_northern_red_oak.yaml +31 -18
  152. fvs_python-0.2.4/src/pyfvs/cfg/species/sk_southern_red_oak.yaml +162 -0
  153. fvs_python-0.2.4/src/pyfvs/cfg/species/sn_sourwood.yaml +148 -0
  154. fvs_python-0.2.4/src/pyfvs/cfg/species/so_scarlet_oak.yaml +162 -0
  155. fvs_python-0.2.4/src/pyfvs/cfg/species/ss_sassafras.yaml +147 -0
  156. fvs_python-0.2.4/src/pyfvs/cfg/species/sy_american_sycamore.yaml +104 -0
  157. fvs_python-0.2.4/src/pyfvs/cfg/species/to_turkey_oak.yaml +116 -0
  158. fvs_python-0.2.4/src/pyfvs/cfg/species/ts_swamp_tupelo.yaml +104 -0
  159. fvs_python-0.2.4/src/pyfvs/cfg/species/we_winged_elm.yaml +104 -0
  160. fvs_python-0.2.4/src/pyfvs/cfg/species/wn_black_walnut.yaml +147 -0
  161. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/yp_yellow_poplar.yaml +7 -17
  162. fvs_python-0.2.4/src/pyfvs/cfg/species_config.yaml +345 -0
  163. fvs_python-0.2.4/src/pyfvs/cfg/wc/species/df_douglas_fir.yaml +57 -0
  164. fvs_python-0.2.4/src/pyfvs/cfg/wc/species/rc_western_red_cedar.yaml +57 -0
  165. fvs_python-0.2.4/src/pyfvs/cfg/wc/species/wh_western_hemlock.yaml +57 -0
  166. fvs_python-0.2.4/src/pyfvs/cfg/wc/wc_diameter_growth_coefficients.json +440 -0
  167. fvs_python-0.2.4/src/pyfvs/cfg/wc/wc_height_diameter_coefficients.json +47 -0
  168. fvs_python-0.2.4/src/pyfvs/cfg/wc/wc_species_config.yaml +146 -0
  169. fvs_python-0.2.4/src/pyfvs/cfg/ws/species/sp.yaml +33 -0
  170. fvs_python-0.2.4/src/pyfvs/cfg/ws/ws_diameter_growth_coefficients.json +297 -0
  171. fvs_python-0.2.4/src/pyfvs/cfg/ws/ws_height_diameter_coefficients.json +53 -0
  172. fvs_python-0.2.4/src/pyfvs/cfg/ws/ws_species_config.yaml +239 -0
  173. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/clark_profile.py +1 -2
  174. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/competition.py +5 -4
  175. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/config_loader.py +207 -62
  176. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/crown_competition_factor.py +86 -33
  177. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/crown_ratio.py +145 -103
  178. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/crown_width.py +168 -130
  179. fvs_python-0.2.4/src/pyfvs/cs_diameter_growth.py +363 -0
  180. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/data_export.py +1 -1
  181. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/ecological_unit.py +20 -28
  182. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/exceptions.py +9 -2
  183. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/fia_integration.py +79 -35
  184. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/forest_type.py +11 -11
  185. fvs_python-0.2.4/src/pyfvs/growth_parameters.py +180 -0
  186. fvs_python-0.2.4/src/pyfvs/growth_plots.py +104 -0
  187. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/harvest.py +91 -29
  188. fvs_python-0.2.4/src/pyfvs/height_diameter.py +390 -0
  189. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/large_tree_height_growth.py +132 -74
  190. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/logging_config.py +1 -37
  191. fvs_python-0.2.4/src/pyfvs/ls_diameter_growth.py +325 -0
  192. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/main.py +2 -4
  193. fvs_python-0.2.4/src/pyfvs/model_base.py +159 -0
  194. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/mortality.py +4 -3
  195. fvs_python-0.2.4/src/pyfvs/ne_diameter_growth.py +341 -0
  196. fvs_python-0.2.4/src/pyfvs/oc_diameter_growth.py +340 -0
  197. fvs_python-0.2.4/src/pyfvs/op_diameter_growth.py +374 -0
  198. fvs_python-0.2.4/src/pyfvs/pn_diameter_growth.py +389 -0
  199. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/simulation_engine.py +56 -67
  200. fvs_python-0.2.4/src/pyfvs/sn_diameter_growth.py +290 -0
  201. fvs_python-0.2.4/src/pyfvs/species.py +507 -0
  202. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/stand.py +79 -23
  203. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/stand_metrics.py +21 -32
  204. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/stand_output.py +3 -1
  205. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/tree.py +506 -172
  206. fvs_python-0.2.4/src/pyfvs/tree_utils.py +49 -0
  207. fvs_python-0.2.4/src/pyfvs/utils/__init__.py +25 -0
  208. fvs_python-0.2.4/src/pyfvs/utils/age_lookup.py +270 -0
  209. fvs_python-0.2.4/src/pyfvs/utils/string_utils.py +43 -0
  210. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/validation.py +5 -24
  211. fvs_python-0.2.4/src/pyfvs/volume_library.py +416 -0
  212. fvs_python-0.2.4/src/pyfvs/wc_diameter_growth.py +305 -0
  213. fvs_python-0.2.4/src/pyfvs/ws_diameter_growth.py +326 -0
  214. {fvs_python-0.2.3 → fvs_python-0.2.4}/tests/test_competition.py +0 -73
  215. {fvs_python-0.2.3 → fvs_python-0.2.4}/tests/test_documentation_examples.py +30 -28
  216. {fvs_python-0.2.3 → fvs_python-0.2.4}/tests/test_harvest.py +0 -47
  217. {fvs_python-0.2.3 → fvs_python-0.2.4}/tests/test_height_diameter.py +167 -7
  218. {fvs_python-0.2.3 → fvs_python-0.2.4}/tests/test_integration.py +1 -1
  219. {fvs_python-0.2.3 → fvs_python-0.2.4}/tests/test_manuscript_validation.py +3 -0
  220. {fvs_python-0.2.3 → fvs_python-0.2.4}/tests/test_model_validation.py +158 -105
  221. fvs_python-0.2.4/tests/test_mortality.py +829 -0
  222. {fvs_python-0.2.3 → fvs_python-0.2.4}/tests/test_stand.py +366 -1
  223. {fvs_python-0.2.3 → fvs_python-0.2.4}/tests/test_stand_metrics.py +0 -92
  224. {fvs_python-0.2.3 → fvs_python-0.2.4}/tests/test_tree.py +181 -1
  225. fvs_python-0.2.3/src/fvs_python.egg-info/SOURCES.txt +0 -170
  226. fvs_python-0.2.3/src/pyfvs/__init__.py +0 -107
  227. fvs_python-0.2.3/src/pyfvs/cfg/sn_diameter_growth_coefficients.json +0 -300
  228. fvs_python-0.2.3/src/pyfvs/cfg/species/bk_sugar_maple.yaml +0 -251
  229. fvs_python-0.2.3/src/pyfvs/cfg/species/bo_red_maple.yaml +0 -255
  230. fvs_python-0.2.3/src/pyfvs/cfg/species/ck_virginia_pine.yaml +0 -254
  231. fvs_python-0.2.3/src/pyfvs/cfg/species/co_pond_cypress.yaml +0 -251
  232. fvs_python-0.2.3/src/pyfvs/cfg/species/lo_silver_maple.yaml +0 -252
  233. fvs_python-0.2.3/src/pyfvs/cfg/species/po_american_beech.yaml +0 -254
  234. fvs_python-0.2.3/src/pyfvs/cfg/species/qs_flowering_dogwood.yaml +0 -254
  235. fvs_python-0.2.3/src/pyfvs/cfg/species/sn_loblolly_pine.yaml +0 -254
  236. fvs_python-0.2.3/src/pyfvs/cfg/species/ss_basswood.yaml +0 -251
  237. fvs_python-0.2.3/src/pyfvs/cfg/species_config.yaml +0 -106
  238. fvs_python-0.2.3/src/pyfvs/growth_plots.py +0 -579
  239. fvs_python-0.2.3/src/pyfvs/height_diameter.py +0 -248
  240. fvs_python-0.2.3/src/pyfvs/parameters.py +0 -121
  241. fvs_python-0.2.3/src/pyfvs/volume_library.py +0 -761
  242. fvs_python-0.2.3/tests/test_mortality.py +0 -346
  243. {fvs_python-0.2.3 → fvs_python-0.2.4}/LICENSE +0 -0
  244. {fvs_python-0.2.3 → fvs_python-0.2.4}/setup.cfg +0 -0
  245. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/fvs_python.egg-info/dependency_links.txt +0 -0
  246. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/fvs_python.egg-info/top_level.txt +0 -0
  247. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/CFG_README.md +0 -0
  248. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/dbh_bounding_table_4_7_1_8.json +0 -0
  249. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/ecounit_coefficients_table_4_7_1_5.json +0 -0
  250. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/ecounit_coefficients_table_4_7_1_6.json +0 -0
  251. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/forest_type_mapping_table_4_7_1_4.json +0 -0
  252. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/fortype_coefficients_table_4_7_1_3.json +0 -0
  253. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/functional_forms.yaml +0 -0
  254. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/growth_model_parameters.yaml +0 -0
  255. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/plant_values_table_4_7_1_7.json +0 -0
  256. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/site_index_transformation.yaml +0 -0
  257. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/sn_bark_ratio_coefficients.json +0 -0
  258. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/sn_crown_competition_factor.json +0 -0
  259. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/sn_crown_ratio_coefficients.json +0 -0
  260. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/sn_crown_width_coefficients.json +0 -0
  261. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/sn_height_diameter_coefficients.json +0 -0
  262. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/sn_large_tree_diameter_growth.json +0 -0
  263. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/sn_large_tree_height_growth.json +0 -0
  264. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/sn_large_tree_height_growth_coefficients.json +0 -0
  265. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/sn_mortality_model.json +0 -0
  266. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/sn_regeneration_model.json +0 -0
  267. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/sn_relative_site_index.json +0 -0
  268. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/sn_species_codes_table.json +0 -0
  269. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/sn_stand_density_index.json +0 -0
  270. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ab_american_basswood.yaml +0 -0
  271. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ae_american_elm.yaml +0 -0
  272. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ah_american_hornbeam.yaml +0 -0
  273. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ap_american_plum.yaml +0 -0
  274. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/as_american_sycamore.yaml +0 -0
  275. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ba_black_ash.yaml +0 -0
  276. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/bb_basswood.yaml +0 -0
  277. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/bc_black_cherry.yaml +0 -0
  278. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/bd_sweet_birch.yaml +0 -0
  279. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/be_american_beech.yaml +0 -0
  280. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/bg_black_gum.yaml +0 -0
  281. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/bj_blue_jay.yaml +0 -0
  282. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/bn_butternut.yaml +0 -0
  283. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/bt_bigtooth_aspen.yaml +0 -0
  284. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/bu_buckeye.yaml +0 -0
  285. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/by_bald_cypress.yaml +0 -0
  286. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ca_american_chestnut.yaml +0 -0
  287. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/cb_cucumber_tree.yaml +0 -0
  288. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ct_catalpa.yaml +0 -0
  289. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/cw_chestnut_oak.yaml +0 -0
  290. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/dw_dogwood.yaml +0 -0
  291. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/el_american_hornbeam.yaml +0 -0
  292. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/fm_flowering_dogwood.yaml +0 -0
  293. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/fr_fraser_fir.yaml +0 -0
  294. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ga_green_ash.yaml +0 -0
  295. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ha_hawthorn.yaml +0 -0
  296. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/hb_hornbeam.yaml +0 -0
  297. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/hh_dogwood.yaml +0 -0
  298. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/hi_hickory_species.yaml +0 -0
  299. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/hl_holly.yaml +0 -0
  300. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/hm_eastern_hemlock.yaml +0 -0
  301. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/hy_holly.yaml +0 -0
  302. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ju_eastern_juniper.yaml +0 -0
  303. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/lb_loblolly_bay.yaml +0 -0
  304. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/lk_laurel_oak.yaml +0 -0
  305. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ll_longleaf_pine.yaml +0 -0
  306. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/lp_loblolly_pine.yaml +0 -0
  307. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/mb_mountain_birch.yaml +0 -0
  308. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/mg_magnolia.yaml +0 -0
  309. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ml_maple_leaf.yaml +0 -0
  310. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ms_maple_species.yaml +0 -0
  311. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/mv_magnolia_vine.yaml +0 -0
  312. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/oh_other_hardwood.yaml +0 -0
  313. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/os_other_softwood.yaml +0 -0
  314. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ot_other_tree.yaml +0 -0
  315. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ov_overcup_oak.yaml +0 -0
  316. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/pc_pond_cypress.yaml +0 -0
  317. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/pd_pitch_pine.yaml +0 -0
  318. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/pi_pine_species.yaml +0 -0
  319. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/pp_pond_pine.yaml +0 -0
  320. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ps_persimmon.yaml +0 -0
  321. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/pu_pond_pine.yaml +0 -0
  322. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ra_red_ash.yaml +0 -0
  323. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/rd_redbud.yaml +0 -0
  324. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/rl_red_elm.yaml +0 -0
  325. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/rm_red_maple.yaml +0 -0
  326. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/sa_slash_pine.yaml +0 -0
  327. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/sb_sweet_birch.yaml +0 -0
  328. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/sd_sand_pine.yaml +0 -0
  329. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/sk_swamp_oak.yaml +0 -0
  330. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/sm_sugar_maple.yaml +0 -0
  331. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/so_southern_oak.yaml +0 -0
  332. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/sp_shortleaf_pine.yaml +0 -0
  333. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/sr_spruce_pine.yaml +0 -0
  334. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/su_sweetgum.yaml +0 -0
  335. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/sv_silver_maple.yaml +0 -0
  336. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/sy_sycamore.yaml +0 -0
  337. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/tm_tamarack.yaml +0 -0
  338. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/to_tulip_oak.yaml +0 -0
  339. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/ts_tulip_tree.yaml +0 -0
  340. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/vp_virginia_pine.yaml +0 -0
  341. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/wa_white_ash.yaml +0 -0
  342. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/we_white_elm.yaml +0 -0
  343. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/wi_willow.yaml +0 -0
  344. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/wk_water_oak.yaml +0 -0
  345. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/wn_walnut.yaml +0 -0
  346. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/wo_white_oak.yaml +0 -0
  347. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/wp_white_pine.yaml +0 -0
  348. {fvs_python-0.2.3 → fvs_python-0.2.4}/src/pyfvs/cfg/species/wt_water_tupelo.yaml +0 -0
  349. {fvs_python-0.2.3 → fvs_python-0.2.4}/tests/test_configuration.py +0 -0
  350. {fvs_python-0.2.3 → fvs_python-0.2.4}/tests/test_crown_ratio.py +0 -0
  351. {fvs_python-0.2.3 → fvs_python-0.2.4}/tests/test_fia_integration.py +0 -0
  352. {fvs_python-0.2.3 → fvs_python-0.2.4}/tests/test_performance.py +0 -0
  353. {fvs_python-0.2.3 → fvs_python-0.2.4}/tests/test_stand_output.py +0 -0
  354. {fvs_python-0.2.3 → fvs_python-0.2.4}/tests/test_tree_comprehensive.py +0 -0
  355. {fvs_python-0.2.3 → fvs_python-0.2.4}/tests/test_validation.py +0 -0
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  </div>
{fvs_python-0.2.3 → fvs_python-0.2.4}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
4
4
 
5
5
  [project]
6
6
  name = "fvs-python"
7
- version = "0.2.3"
7
+ version = "0.2.4"
8
8
  description = "Python implementation of the Forest Vegetation Simulator - Part of the FIA Python Ecosystem"
9
9
  readme = "README.md"
10
10
  license = {text = "MIT"}
@@ -88,6 +88,7 @@ test = [
88
88
  "pytest>=6.0.0",
89
89
  "pytest-cov>=3.0.0",
90
90
  "pytest-xdist>=2.0.0",
91
+ "polars>=0.20.0",
91
92
  ]
92
93
  docs = [
93
94
  "mkdocs>=1.6.0",
@@ -188,6 +189,7 @@ markers = [
188
189
  "slow: marks tests as slow (deselect with '-m \"not slow\"')",
189
190
  "integration: marks tests as integration tests",
190
191
  "unit: marks tests as unit tests",
192
+ "benchmark: marks tests as performance benchmarks",
191
193
  ]
192
194
 
193
195
  # Coverage configuration
{fvs_python-0.2.3 → fvs_python-0.2.4/src/fvs_python.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: fvs-python
3
- Version: 0.2.3
3
+ Version: 0.2.4
4
4
  Summary: Python implementation of the Forest Vegetation Simulator - Part of the FIA Python Ecosystem
5
5
  Author-email: Chris Mihiar <chris.mihiar@gmail.com>
6
6
  Maintainer-email: Chris Mihiar <chris.mihiar@gmail.com>
@@ -57,6 +57,7 @@ Provides-Extra: test
57
57
  Requires-Dist: pytest>=6.0.0; extra == "test"
58
58
  Requires-Dist: pytest-cov>=3.0.0; extra == "test"
59
59
  Requires-Dist: pytest-xdist>=2.0.0; extra == "test"
60
+ Requires-Dist: polars>=0.20.0; extra == "test"
60
61
  Provides-Extra: docs
61
62
  Requires-Dist: mkdocs>=1.6.0; extra == "docs"
62
63
  Requires-Dist: mkdocs-material>=9.5.0; extra == "docs"
@@ -248,7 +249,13 @@ pyFVS is part of the [FIAtools Python ecosystem](https://fiatools.org) - a unifi
248
249
 
249
250
  ---
250
251
 
252
+ ## Affiliation
253
+
254
+ Developed in collaboration with USDA Forest Service Research & Development. pyFVS is a Python implementation of the Forest Vegetation Simulator and is part of the FIA Python Ecosystem.
255
+
256
+ ---
257
+
251
258
  <div align="center">
252
- <a href="https://fiatools.org"><strong>fiatools.org</strong></a> · Python Ecosystem for Forest Inventory Analysis<br>
259
+ <a href="https://fiatools.org"><strong>fiatools.org</strong></a> · Python Ecosystem for Forest Inventory Applications<br>
253
260
  <sub>Built by <a href="https://github.com/mihiarc">Chris Mihiar</a> · USDA Forest Service Southern Research Station</sub>
254
261
  </div>
fvs_python-0.2.4/src/fvs_python.egg-info/SOURCES.txt ADDED
@@ -0,0 +1,335 @@
1
+ LICENSE
2
+ README.md
3
+ pyproject.toml
4
+ src/fvs_python.egg-info/PKG-INFO
5
+ src/fvs_python.egg-info/SOURCES.txt
6
+ src/fvs_python.egg-info/dependency_links.txt
7
+ src/fvs_python.egg-info/requires.txt
8
+ src/fvs_python.egg-info/top_level.txt
9
+ src/pyfvs/__init__.py
10
+ src/pyfvs/bark_ratio.py
11
+ src/pyfvs/ca_diameter_growth.py
12
+ src/pyfvs/clark_profile.py
13
+ src/pyfvs/competition.py
14
+ src/pyfvs/config_loader.py
15
+ src/pyfvs/crown_competition_factor.py
16
+ src/pyfvs/crown_ratio.py
17
+ src/pyfvs/crown_width.py
18
+ src/pyfvs/cs_diameter_growth.py
19
+ src/pyfvs/data_export.py
20
+ src/pyfvs/ecological_unit.py
21
+ src/pyfvs/exceptions.py
22
+ src/pyfvs/fia_integration.py
23
+ src/pyfvs/forest_type.py
24
+ src/pyfvs/growth_parameters.py
25
+ src/pyfvs/growth_plots.py
26
+ src/pyfvs/harvest.py
27
+ src/pyfvs/height_diameter.py
28
+ src/pyfvs/large_tree_height_growth.py
29
+ src/pyfvs/logging_config.py
30
+ src/pyfvs/ls_diameter_growth.py
31
+ src/pyfvs/main.py
32
+ src/pyfvs/model_base.py
33
+ src/pyfvs/mortality.py
34
+ src/pyfvs/ne_diameter_growth.py
35
+ src/pyfvs/oc_diameter_growth.py
36
+ src/pyfvs/op_diameter_growth.py
37
+ src/pyfvs/pn_diameter_growth.py
38
+ src/pyfvs/simulation_engine.py
39
+ src/pyfvs/sn_diameter_growth.py
40
+ src/pyfvs/species.py
41
+ src/pyfvs/stand.py
42
+ src/pyfvs/stand_metrics.py
43
+ src/pyfvs/stand_output.py
44
+ src/pyfvs/tree.py
45
+ src/pyfvs/tree_utils.py
46
+ src/pyfvs/validation.py
47
+ src/pyfvs/volume_library.py
48
+ src/pyfvs/wc_diameter_growth.py
49
+ src/pyfvs/ws_diameter_growth.py
50
+ src/pyfvs/cfg/CFG_README.md
51
+ src/pyfvs/cfg/dbh_bounding_table_4_7_1_8.json
52
+ src/pyfvs/cfg/ecounit_coefficients_table_4_7_1_5.json
53
+ src/pyfvs/cfg/ecounit_coefficients_table_4_7_1_6.json
54
+ src/pyfvs/cfg/forest_type_mapping_table_4_7_1_4.json
55
+ src/pyfvs/cfg/fortype_coefficients_table_4_7_1_3.json
56
+ src/pyfvs/cfg/functional_forms.yaml
57
+ src/pyfvs/cfg/growth_model_parameters.yaml
58
+ src/pyfvs/cfg/plant_values_table_4_7_1_7.json
59
+ src/pyfvs/cfg/site_index_transformation.yaml
60
+ src/pyfvs/cfg/sn_bark_ratio_coefficients.json
61
+ src/pyfvs/cfg/sn_crown_competition_factor.json
62
+ src/pyfvs/cfg/sn_crown_ratio_coefficients.json
63
+ src/pyfvs/cfg/sn_crown_width_coefficients.json
64
+ src/pyfvs/cfg/sn_diameter_growth_coefficients.json
65
+ src/pyfvs/cfg/sn_height_diameter_coefficients.json
66
+ src/pyfvs/cfg/sn_large_tree_diameter_growth.json
67
+ src/pyfvs/cfg/sn_large_tree_height_growth.json
68
+ src/pyfvs/cfg/sn_large_tree_height_growth_coefficients.json
69
+ src/pyfvs/cfg/sn_mortality_model.json
70
+ src/pyfvs/cfg/sn_regeneration_model.json
71
+ src/pyfvs/cfg/sn_relative_site_index.json
72
+ src/pyfvs/cfg/sn_small_tree_height_growth.json
73
+ src/pyfvs/cfg/sn_species_codes_table.json
74
+ src/pyfvs/cfg/sn_stand_density_index.json
75
+ src/pyfvs/cfg/species_config.yaml
76
+ src/pyfvs/cfg/ca/ca_diameter_growth_coefficients.json
77
+ src/pyfvs/cfg/ca/ca_height_diameter_coefficients.json
78
+ src/pyfvs/cfg/ca/ca_species_config.yaml
79
+ src/pyfvs/cfg/ca/species/df_douglas_fir.yaml
80
+ src/pyfvs/cfg/ca/species/gs_giant_sequoia.yaml
81
+ src/pyfvs/cfg/ca/species/jp_jeffrey_pine.yaml
82
+ src/pyfvs/cfg/ca/species/pp_ponderosa_pine.yaml
83
+ src/pyfvs/cfg/ca/species/rw_redwood.yaml
84
+ src/pyfvs/cfg/ca/species/wf_white_fir.yaml
85
+ src/pyfvs/cfg/cs/cs_diameter_growth_coefficients.json
86
+ src/pyfvs/cfg/cs/cs_height_diameter_coefficients.json
87
+ src/pyfvs/cfg/cs/cs_species_config.yaml
88
+ src/pyfvs/cfg/cs/species/bc_black_cherry.yaml
89
+ src/pyfvs/cfg/cs/species/rm_red_maple.yaml
90
+ src/pyfvs/cfg/cs/species/ro_northern_red_oak.yaml
91
+ src/pyfvs/cfg/cs/species/sh_shagbark_hickory.yaml
92
+ src/pyfvs/cfg/cs/species/sm_sugar_maple.yaml
93
+ src/pyfvs/cfg/cs/species/wn_black_walnut.yaml
94
+ src/pyfvs/cfg/cs/species/wo_white_oak.yaml
95
+ src/pyfvs/cfg/cs/species/yp_tuliptree.yaml
96
+ src/pyfvs/cfg/ls/ls_diameter_growth_coefficients.json
97
+ src/pyfvs/cfg/ls/ls_height_diameter_coefficients.json
98
+ src/pyfvs/cfg/ls/ls_mortality_coefficients.json
99
+ src/pyfvs/cfg/ls/ls_species_config.yaml
100
+ src/pyfvs/cfg/ls/species/ab_american_beech.yaml
101
+ src/pyfvs/cfg/ls/species/ac_american_chestnut.yaml
102
+ src/pyfvs/cfg/ls/species/ae_american_elm.yaml
103
+ src/pyfvs/cfg/ls/species/ah_american_hornbeam.yaml
104
+ src/pyfvs/cfg/ls/species/ap_apple.yaml
105
+ src/pyfvs/cfg/ls/species/ba_black_ash.yaml
106
+ src/pyfvs/cfg/ls/species/bc_black_cherry.yaml
107
+ src/pyfvs/cfg/ls/species/be_beech.yaml
108
+ src/pyfvs/cfg/ls/species/bf_balsam_fir.yaml
109
+ src/pyfvs/cfg/ls/species/bg_black_gum.yaml
110
+ src/pyfvs/cfg/ls/species/bh_bitternut_hickory.yaml
111
+ src/pyfvs/cfg/ls/species/bk_birch_species.yaml
112
+ src/pyfvs/cfg/ls/species/bl_black_locust.yaml
113
+ src/pyfvs/cfg/ls/species/bm_black_maple.yaml
114
+ src/pyfvs/cfg/ls/species/bn_butternut.yaml
115
+ src/pyfvs/cfg/ls/species/bo_black_oak.yaml
116
+ src/pyfvs/cfg/ls/species/bp_balsam_poplar.yaml
117
+ src/pyfvs/cfg/ls/species/br_bur_oak.yaml
118
+ src/pyfvs/cfg/ls/species/bs_black_spruce.yaml
119
+ src/pyfvs/cfg/ls/species/bt_bigtooth_aspen.yaml
120
+ src/pyfvs/cfg/ls/species/bw_black_willow.yaml
121
+ src/pyfvs/cfg/ls/species/cc_chokecherry.yaml
122
+ src/pyfvs/cfg/ls/species/ck_chinkapin_oak.yaml
123
+ src/pyfvs/cfg/ls/species/dm_boxelder.yaml
124
+ src/pyfvs/cfg/ls/species/dw_dogwood.yaml
125
+ src/pyfvs/cfg/ls/species/ec_eastern_cottonwood.yaml
126
+ src/pyfvs/cfg/ls/species/eh_eastern_hemlock.yaml
127
+ src/pyfvs/cfg/ls/species/ga_green_ash.yaml
128
+ src/pyfvs/cfg/ls/species/hh_hophornbeam.yaml
129
+ src/pyfvs/cfg/ls/species/hk_hickory_species.yaml
130
+ src/pyfvs/cfg/ls/species/ht_hackberry.yaml
131
+ src/pyfvs/cfg/ls/species/jp_jack_pine.yaml
132
+ src/pyfvs/cfg/ls/species/ma_mulberry.yaml
133
+ src/pyfvs/cfg/ls/species/mm_mountain_maple.yaml
134
+ src/pyfvs/cfg/ls/species/np_norway_pine.yaml
135
+ src/pyfvs/cfg/ls/species/ns_norway_spruce.yaml
136
+ src/pyfvs/cfg/ls/species/oh_other_hardwood.yaml
137
+ src/pyfvs/cfg/ls/species/os_other_softwood.yaml
138
+ src/pyfvs/cfg/ls/species/pb_paper_birch.yaml
139
+ src/pyfvs/cfg/ls/species/ph_pignut_hickory.yaml
140
+ src/pyfvs/cfg/ls/species/pl_plum_species.yaml
141
+ src/pyfvs/cfg/ls/species/pr_pin_cherry.yaml
142
+ src/pyfvs/cfg/ls/species/qa_quaking_aspen.yaml
143
+ src/pyfvs/cfg/ls/species/rc_eastern_redcedar.yaml
144
+ src/pyfvs/cfg/ls/species/re_slippery_elm.yaml
145
+ src/pyfvs/cfg/ls/species/rl_rock_elm.yaml
146
+ src/pyfvs/cfg/ls/species/rm_red_maple.yaml
147
+ src/pyfvs/cfg/ls/species/rn_red_pine.yaml
148
+ src/pyfvs/cfg/ls/species/ro_northern_red_oak.yaml
149
+ src/pyfvs/cfg/ls/species/rp_red_pine.yaml
150
+ src/pyfvs/cfg/ls/species/sc_scotch_pine.yaml
151
+ src/pyfvs/cfg/ls/species/sh_shagbark_hickory.yaml
152
+ src/pyfvs/cfg/ls/species/sm_sugar_maple.yaml
153
+ src/pyfvs/cfg/ls/species/ss_sassafras.yaml
154
+ src/pyfvs/cfg/ls/species/st_striped_maple.yaml
155
+ src/pyfvs/cfg/ls/species/sv_silver_maple.yaml
156
+ src/pyfvs/cfg/ls/species/sw_swamp_white_oak.yaml
157
+ src/pyfvs/cfg/ls/species/sy_sycamore.yaml
158
+ src/pyfvs/cfg/ls/species/ta_tamarack.yaml
159
+ src/pyfvs/cfg/ls/species/wa_white_ash.yaml
160
+ src/pyfvs/cfg/ls/species/wc_white_cedar.yaml
161
+ src/pyfvs/cfg/ls/species/wi_willow.yaml
162
+ src/pyfvs/cfg/ls/species/wn_black_walnut.yaml
163
+ src/pyfvs/cfg/ls/species/wo_white_oak.yaml
164
+ src/pyfvs/cfg/ls/species/wp_white_pine.yaml
165
+ src/pyfvs/cfg/ls/species/ws_white_spruce.yaml
166
+ src/pyfvs/cfg/ls/species/yb_yellow_birch.yaml
167
+ src/pyfvs/cfg/ne/ne_diameter_growth_coefficients.json
168
+ src/pyfvs/cfg/ne/ne_height_diameter_coefficients.json
169
+ src/pyfvs/cfg/ne/ne_species_config.yaml
170
+ src/pyfvs/cfg/ne/species/bc_black_cherry.yaml
171
+ src/pyfvs/cfg/ne/species/bf_balsam_fir.yaml
172
+ src/pyfvs/cfg/ne/species/rm_red_maple.yaml
173
+ src/pyfvs/cfg/ne/species/ro_northern_red_oak.yaml
174
+ src/pyfvs/cfg/ne/species/rs_red_spruce.yaml
175
+ src/pyfvs/cfg/ne/species/sm_sugar_maple.yaml
176
+ src/pyfvs/cfg/ne/species/wp_white_pine.yaml
177
+ src/pyfvs/cfg/ne/species/yb_yellow_birch.yaml
178
+ src/pyfvs/cfg/oc/oc_diameter_growth_coefficients.json
179
+ src/pyfvs/cfg/oc/oc_height_diameter_coefficients.json
180
+ src/pyfvs/cfg/oc/oc_species_config.yaml
181
+ src/pyfvs/cfg/oc/species/df.yaml
182
+ src/pyfvs/cfg/op/op_diameter_growth_coefficients.json
183
+ src/pyfvs/cfg/op/op_height_diameter_coefficients.json
184
+ src/pyfvs/cfg/op/op_species_config.yaml
185
+ src/pyfvs/cfg/op/species/df_douglas_fir.yaml
186
+ src/pyfvs/cfg/op/species/ra_red_alder.yaml
187
+ src/pyfvs/cfg/op/species/rc_western_red_cedar.yaml
188
+ src/pyfvs/cfg/op/species/wh_western_hemlock.yaml
189
+ src/pyfvs/cfg/pn/pn_diameter_growth_coefficients.json
190
+ src/pyfvs/cfg/pn/pn_height_diameter_coefficients.json
191
+ src/pyfvs/cfg/pn/pn_species_config.yaml
192
+ src/pyfvs/cfg/pn/species/df_douglas_fir.yaml
193
+ src/pyfvs/cfg/pn/species/rc_western_red_cedar.yaml
194
+ src/pyfvs/cfg/pn/species/wh_western_hemlock.yaml
195
+ src/pyfvs/cfg/species/ab_american_basswood.yaml
196
+ src/pyfvs/cfg/species/ab_american_beech.yaml
197
+ src/pyfvs/cfg/species/ae_american_elm.yaml
198
+ src/pyfvs/cfg/species/ah_american_hornbeam.yaml
199
+ src/pyfvs/cfg/species/ap_american_plum.yaml
200
+ src/pyfvs/cfg/species/ap_apple.yaml
201
+ src/pyfvs/cfg/species/as_american_sycamore.yaml
202
+ src/pyfvs/cfg/species/ba_black_ash.yaml
203
+ src/pyfvs/cfg/species/bb_american_basswood.yaml
204
+ src/pyfvs/cfg/species/bb_basswood.yaml
205
+ src/pyfvs/cfg/species/bc_black_cherry.yaml
206
+ src/pyfvs/cfg/species/bd_sweet_birch.yaml
207
+ src/pyfvs/cfg/species/be_american_beech.yaml
208
+ src/pyfvs/cfg/species/bg_black_gum.yaml
209
+ src/pyfvs/cfg/species/bj_blackjack_oak.yaml
210
+ src/pyfvs/cfg/species/bj_blue_jay.yaml
211
+ src/pyfvs/cfg/species/bk_black_oak.yaml
212
+ src/pyfvs/cfg/species/bn_butternut.yaml
213
+ src/pyfvs/cfg/species/bo_blackjack_oak.yaml
214
+ src/pyfvs/cfg/species/bt_bigtooth_aspen.yaml
215
+ src/pyfvs/cfg/species/bu_buckeye.yaml
216
+ src/pyfvs/cfg/species/by_bald_cypress.yaml
217
+ src/pyfvs/cfg/species/ca_american_chestnut.yaml
218
+ src/pyfvs/cfg/species/ca_catalpa.yaml
219
+ src/pyfvs/cfg/species/cb_cherrybark_oak.yaml
220
+ src/pyfvs/cfg/species/cb_cucumber_tree.yaml
221
+ src/pyfvs/cfg/species/ck_chinkapin_oak.yaml
222
+ src/pyfvs/cfg/species/co_atlantic_white_cedar.yaml
223
+ src/pyfvs/cfg/species/ct_catalpa.yaml
224
+ src/pyfvs/cfg/species/cw_chestnut_oak.yaml
225
+ src/pyfvs/cfg/species/dw_dogwood.yaml
226
+ src/pyfvs/cfg/species/el_american_hornbeam.yaml
227
+ src/pyfvs/cfg/species/el_elm.yaml
228
+ src/pyfvs/cfg/species/fm_flowering_dogwood.yaml
229
+ src/pyfvs/cfg/species/fr_fraser_fir.yaml
230
+ src/pyfvs/cfg/species/ga_green_ash.yaml
231
+ src/pyfvs/cfg/species/ha_hawthorn.yaml
232
+ src/pyfvs/cfg/species/hb_hornbeam.yaml
233
+ src/pyfvs/cfg/species/hh_dogwood.yaml
234
+ src/pyfvs/cfg/species/hh_hophornbeam.yaml
235
+ src/pyfvs/cfg/species/hi_hickory_species.yaml
236
+ src/pyfvs/cfg/species/hl_holly.yaml
237
+ src/pyfvs/cfg/species/hm_eastern_hemlock.yaml
238
+ src/pyfvs/cfg/species/hy_american_holly.yaml
239
+ src/pyfvs/cfg/species/hy_holly.yaml
240
+ src/pyfvs/cfg/species/ju_eastern_juniper.yaml
241
+ src/pyfvs/cfg/species/lb_loblolly_bay.yaml
242
+ src/pyfvs/cfg/species/lk_laurel_oak.yaml
243
+ src/pyfvs/cfg/species/ll_longleaf_pine.yaml
244
+ src/pyfvs/cfg/species/lo_live_oak.yaml
245
+ src/pyfvs/cfg/species/lp_loblolly_pine.yaml
246
+ src/pyfvs/cfg/species/mb_mountain_birch.yaml
247
+ src/pyfvs/cfg/species/mb_mulberry.yaml
248
+ src/pyfvs/cfg/species/mg_magnolia.yaml
249
+ src/pyfvs/cfg/species/ml_bigleaf_magnolia.yaml
250
+ src/pyfvs/cfg/species/ml_maple_leaf.yaml
251
+ src/pyfvs/cfg/species/ms_maple_species.yaml
252
+ src/pyfvs/cfg/species/mv_magnolia_vine.yaml
253
+ src/pyfvs/cfg/species/mv_sweetbay.yaml
254
+ src/pyfvs/cfg/species/oh_other_hardwood.yaml
255
+ src/pyfvs/cfg/species/os_other_softwood.yaml
256
+ src/pyfvs/cfg/species/ot_other_tree.yaml
257
+ src/pyfvs/cfg/species/ov_overcup_oak.yaml
258
+ src/pyfvs/cfg/species/pc_pond_cypress.yaml
259
+ src/pyfvs/cfg/species/pd_pitch_pine.yaml
260
+ src/pyfvs/cfg/species/pi_pine_species.yaml
261
+ src/pyfvs/cfg/species/po_post_oak.yaml
262
+ src/pyfvs/cfg/species/pp_pond_pine.yaml
263
+ src/pyfvs/cfg/species/ps_persimmon.yaml
264
+ src/pyfvs/cfg/species/pu_pond_pine.yaml
265
+ src/pyfvs/cfg/species/qs_oak_species.yaml
266
+ src/pyfvs/cfg/species/ra_red_ash.yaml
267
+ src/pyfvs/cfg/species/rd_redbud.yaml
268
+ src/pyfvs/cfg/species/rl_red_elm.yaml
269
+ src/pyfvs/cfg/species/rl_slippery_elm.yaml
270
+ src/pyfvs/cfg/species/rm_red_maple.yaml
271
+ src/pyfvs/cfg/species/ro_northern_red_oak.yaml
272
+ src/pyfvs/cfg/species/sa_slash_pine.yaml
273
+ src/pyfvs/cfg/species/sb_sweet_birch.yaml
274
+ src/pyfvs/cfg/species/sd_sand_pine.yaml
275
+ src/pyfvs/cfg/species/sk_southern_red_oak.yaml
276
+ src/pyfvs/cfg/species/sk_swamp_oak.yaml
277
+ src/pyfvs/cfg/species/sm_sugar_maple.yaml
278
+ src/pyfvs/cfg/species/sn_sourwood.yaml
279
+ src/pyfvs/cfg/species/so_scarlet_oak.yaml
280
+ src/pyfvs/cfg/species/so_southern_oak.yaml
281
+ src/pyfvs/cfg/species/sp_shortleaf_pine.yaml
282
+ src/pyfvs/cfg/species/sr_spruce_pine.yaml
283
+ src/pyfvs/cfg/species/ss_sassafras.yaml
284
+ src/pyfvs/cfg/species/su_sweetgum.yaml
285
+ src/pyfvs/cfg/species/sv_silver_maple.yaml
286
+ src/pyfvs/cfg/species/sy_american_sycamore.yaml
287
+ src/pyfvs/cfg/species/sy_sycamore.yaml
288
+ src/pyfvs/cfg/species/tm_tamarack.yaml
289
+ src/pyfvs/cfg/species/to_tulip_oak.yaml
290
+ src/pyfvs/cfg/species/to_turkey_oak.yaml
291
+ src/pyfvs/cfg/species/ts_swamp_tupelo.yaml
292
+ src/pyfvs/cfg/species/ts_tulip_tree.yaml
293
+ src/pyfvs/cfg/species/vp_virginia_pine.yaml
294
+ src/pyfvs/cfg/species/wa_white_ash.yaml
295
+ src/pyfvs/cfg/species/we_white_elm.yaml
296
+ src/pyfvs/cfg/species/we_winged_elm.yaml
297
+ src/pyfvs/cfg/species/wi_willow.yaml
298
+ src/pyfvs/cfg/species/wk_water_oak.yaml
299
+ src/pyfvs/cfg/species/wn_black_walnut.yaml
300
+ src/pyfvs/cfg/species/wn_walnut.yaml
301
+ src/pyfvs/cfg/species/wo_white_oak.yaml
302
+ src/pyfvs/cfg/species/wp_white_pine.yaml
303
+ src/pyfvs/cfg/species/wt_water_tupelo.yaml
304
+ src/pyfvs/cfg/species/yp_yellow_poplar.yaml
305
+ src/pyfvs/cfg/wc/wc_diameter_growth_coefficients.json
306
+ src/pyfvs/cfg/wc/wc_height_diameter_coefficients.json
307
+ src/pyfvs/cfg/wc/wc_species_config.yaml
308
+ src/pyfvs/cfg/wc/species/df_douglas_fir.yaml
309
+ src/pyfvs/cfg/wc/species/rc_western_red_cedar.yaml
310
+ src/pyfvs/cfg/wc/species/wh_western_hemlock.yaml
311
+ src/pyfvs/cfg/ws/ws_diameter_growth_coefficients.json
312
+ src/pyfvs/cfg/ws/ws_height_diameter_coefficients.json
313
+ src/pyfvs/cfg/ws/ws_species_config.yaml
314
+ src/pyfvs/cfg/ws/species/sp.yaml
315
+ src/pyfvs/utils/__init__.py
316
+ src/pyfvs/utils/age_lookup.py
317
+ src/pyfvs/utils/string_utils.py
318
+ tests/test_competition.py
319
+ tests/test_configuration.py
320
+ tests/test_crown_ratio.py
321
+ tests/test_documentation_examples.py
322
+ tests/test_fia_integration.py
323
+ tests/test_harvest.py
324
+ tests/test_height_diameter.py
325
+ tests/test_integration.py
326
+ tests/test_manuscript_validation.py
327
+ tests/test_model_validation.py
328
+ tests/test_mortality.py
329
+ tests/test_performance.py
330
+ tests/test_stand.py
331
+ tests/test_stand_metrics.py
332
+ tests/test_stand_output.py
333
+ tests/test_tree.py
334
+ tests/test_tree_comprehensive.py
335
+ tests/test_validation.py
{fvs_python-0.2.3 → fvs_python-0.2.4}/src/fvs_python.egg-info/requires.txt RENAMED
@@ -34,3 +34,4 @@ pymdown-extensions>=10.7
34
34
  pytest>=6.0.0
35
35
  pytest-cov>=3.0.0
36
36
  pytest-xdist>=2.0.0
37
+ polars>=0.20.0