fuzzylink-py 0.1.0__tar.gz

fuzzylink_py-0.1.0/.github/FUNDING.yml

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+# open_collective: blackfish

fuzzylink_py-0.1.0/.github/dependabot.yml

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+version: 2
+
+updates:
+  - package-ecosystem: github-actions
+    directory: "/"
+    schedule:
+      interval: weekly
+    groups:
+      actions:
+        patterns:
+          - "*"

fuzzylink_py-0.1.0/.github/release.yml

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+changelog:
+  exclude:
+    authors:
+      - dependabot
+      - pre-commit-ci

fuzzylink_py-0.1.0/.github/workflows/ci.yml

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+name: CI
+on:
+  push:
+    branches: ["main"]
+    tags: [ 'v*.*.*' ]
+  pull_request:
+    branches: ["main"]
+env:
+  FORCE_COLOR: "1"
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+permissions:
+  contents: write
+jobs:
+
+  lint:
+    name: Lint code 🧹
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: wntrblm/nox@main
+      - name: Set up Python 3.x
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.x"
+      - name: Install Project
+        run: |
+          python -m pip install --disable-pip-version-check .
+      - name: Lint
+        run: nox --non-interactive --error-on-missing-interpreters --session "lint"
+
+  tests:
+    name: Run tests 🧪
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest]
+        python-version: ["3.12", "3.13"]
+    steps:
+      - uses: actions/checkout@v4
+      - uses: wntrblm/nox@main
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install Project
+        run: |
+          python -m pip install --disable-pip-version-check .
+      - name: Run tests on ${{ matrix.os }}
+        run: nox --non-interactive --error-on-missing-interpreters --session "tests-${{ matrix.python-version }}" -- --full-trace
+
+  docs-preview:
+    name: Preview documentation 📖
+    runs-on: ubuntu-latest
+    if: github.event_name == 'pull_request'
+    steps:
+      - uses: actions/checkout@v4
+      - name: Configure Git Credentials
+        run: |
+          git config user.name github-actions[bot]
+          git config user.email 41898282+github-actions[bot]@users.noreply.github.com
+      - name: Checkout PR branch
+        run: |
+          git fetch origin
+          git checkout ${{ github.event.pull_request.head.ref }}
+      - uses: actions/setup-python@v5
+        with:
+          python-version: 3.x
+      - run: pip install mkdocs-material mkdocstrings 'mkdocstrings[python]' mkdocs-swagger-ui-tag mike
+      - name: Build and deploy documentation
+        run: mike deploy --push --allow-empty --deploy-prefix pr-preview pr-${{ github.event.number }} --message "Deploying docs preview for PR ${{ github.event.number }} 🛫"
+
+  docs:
+    name: Deploy documentation 📚
+    runs-on: ubuntu-latest
+    if: github.event_name == 'push' && contains(github.ref, 'refs/tags/')
+    steps:
+      - uses: actions/checkout@v4
+      - name: Configure Git Credentials
+        run: |
+          git config user.name github-actions[bot]
+          git config user.email 41898282+github-actions[bot]@users.noreply.github.com
+      - name: Checkout merge branch
+        run: |
+          git fetch origin
+          git checkout ${{ github.ref_name }}
+      - uses: actions/setup-python@v5
+        with:
+          python-version: 3.x
+      - run: pip install mkdocs-material mkdocstrings 'mkdocstrings[python]' mkdocs-swagger-ui-tag mike
+      - name: Build and deploy documentation
+        run: mike deploy --push --update-aliases --allow-empty ${{ github.ref_name }} latest --message "Deploying docs version ${{ github.ref_name }} 🛫"
+
+  build:
+    name: Build distribution 📦
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          persist-credentials: false
+      - name: Set up Python 3.x
+        uses: actions/setup-python@v5
+        with:
+          python-version: 3.x
+      - name: Install uv (latest)
+        uses: astral-sh/setup-uv@v6
+      - name: Build wheel
+        run: uv build
+      - name: Store distribution packages
+        uses: actions/upload-artifact@v4
+        with:
+          name: python-package-distributions
+          path: dist/
+
+  publish:
+    name: Publish to PyPI 🎉
+    needs: build
+    runs-on: ubuntu-latest
+    if: github.event_name == 'push' && contains(github.ref, 'refs/tags/')
+    environment:
+      name: pypi
+      url: https://pypi.org/p/${{ github.repository }}
+    permissions:
+      id-token: write
+
+    steps:
+    - name: Download distributions
+      uses: actions/download-artifact@v4
+      with:
+        name: python-package-distributions
+        path: dist/
+    - name: Publish distributions to PyPI
+      uses: pypa/gh-action-pypi-publish@release/v1
+      with:
+        password: ${{ secrets.PYPI_API_TOKEN }}

fuzzylink_py-0.1.0/.github/workflows/coverage.yml

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+name: Test Coverage
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+    branches:
+      - main
+permissions:
+  contents: write
+jobs:
+  coverage:
+    name: Test Coverage
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - name: Set up Python 3.x
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.x"
+      - name: Install project
+        run: |
+          python -m pip install --disable-pip-version-check .
+      - name: Install dependencies
+        run: pip install pytest pytest-cov coverage-badge setuptools==69.0.3
+      - name: Test and coverage
+        run: python -m pytest --cov --cov-report json
+      - name: Generate badge
+        run: coverage-badge -f -o docs/assets/coverage.svg
+      - name: Commit and push badge
+        uses: EndBug/add-and-commit@v9
+        with:
+          add: 'docs/assets/coverage.svg'
+          message: 'Update coverage badge'

fuzzylink_py-0.1.0/.gitignore

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+*.txt
+*.RData
+*.DS_Store
+*.Rhistory
+Ceda_and_l2_embeddings.json
+tests/data/Ceda_and_l2_llm_labels.json
+tests/data/CHANGES_R_ALIGNMENT.md
+tests/data/Ceda_and_l2_llm_labels_test_budget_growth.json
+tests/data/rate_limiting_explanation.md
+tests/data/Ceda_and_l2_llm_labels_new_format.json
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# UV
+#   Similar to Pipfile.lock, it is generally recommended to include uv.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#uv.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/latest/usage/project/#working-with-version-control
+.pdm.toml
+.pdm-python
+.pdm-build/
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/
+
+# Abstra
+# Abstra is an AI-powered process automation framework.
+# Ignore directories containing user credentials, local state, and settings.
+# Learn more at https://abstra.io/docs
+.abstra/
+
+# Visual Studio Code
+#  Visual Studio Code specific template is maintained in a separate VisualStudioCode.gitignore
+#  that can be found at https://github.com/github/gitignore/blob/main/Global/VisualStudioCode.gitignore
+#  and can be added to the global gitignore or merged into this file. However, if you prefer,
+#  you could uncomment the following to ignore the enitre vscode folder
+# .vscode/
+
+# Ruff stuff:
+.ruff_cache/
+
+# PyPI configuration file
+.pypirc
+
+# Cursor
+#  Cursor is an AI-powered code editor. `.cursorignore` specifies files/directories to
+#  exclude from AI features like autocomplete and code analysis. Recommended for sensitive data
+#  refer to https://docs.cursor.com/context/ignore-files
+.cursorignore
+.cursorindexingignore

fuzzylink_py-0.1.0/.pre-commit-config.yaml

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+ci:
+  autoupdate_commit_msg: "chore: update pre-commit hooks"
+  autoupdate_schedule: weekly
+  autofix_commit_msg: "style: pre-commit fixes"
+
+exclude: 'build/'
+
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v5.0.0
+    hooks:
+      - id: check-added-large-files
+      - id: check-case-conflict
+      - id: check-merge-conflict
+      - id: check-yaml
+      - id: debug-statements
+      - id: end-of-file-fixer
+      - id: mixed-line-ending
+      - id: requirements-txt-fixer
+      - id: trailing-whitespace
+  - repo: https://github.com/tox-dev/pyproject-fmt
+    rev: v2.5.0
+    hooks:
+      - id: pyproject-fmt
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.9.1
+    hooks:
+      - id: ruff
+        args: ["--fix", "--show-fixes"]
+      - id: ruff-format
+  - repo: https://github.com/pre-commit/mirrors-mypy
+    rev: v1.14.1
+    hooks:
+      - id: mypy
+        files: ^(src/)
+        args: [
+          --strict,
+          --ignore-missing-imports,
+        ]
+        additional_dependencies: [types-requests]
+  - repo: https://github.com/codespell-project/codespell
+    rev: v2.2.2
+    hooks:
+      - id: codespell
+  - repo: https://github.com/pre-commit/pygrep-hooks
+    rev: v1.10.0
+    hooks:
+      - id: python-use-type-annotations
+      - id: python-no-log-warn
+      - id: python-check-mock-methods
+      - id: python-no-eval

fuzzylink_py-0.1.0/LICENSE

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+MIT License
+
+Copyright (c) 2025 Princeton DDSS
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.