funcnodes-span 0.3.7__tar.gz → 1.0.0__tar.gz

funcnodes_span-1.0.0/.flake8

@@ -0,0 +1,3 @@
+[flake8]
+max-line-length=120
+extend-ignore = E203

funcnodes_span-1.0.0/.github/actions/install_package/action.yml

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+name: install_package
+description: Install a package from local pyproject.toml
+inputs:
+  python_version:
+    description: "Python version to install"
+    default: "3.12"
+
+runs:
+  using: "composite"
+
+  steps:
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      id: setup_python
+      with:
+        python-version: ${{ inputs.python_version }}
+        allow-prereleases: true
+
+    - name: Install UV
+      shell: bash
+      run: |
+        python -m pip install --upgrade pip
+        pip install uv
+        echo "python-version=${{ steps.setup_python.outputs.python-version }}" >> "$GITHUB_OUTPUT"
+
+    - name: Install Dependencies
+      shell: bash
+      run: |
+        uv sync --refresh
+        echo "python-version=${{ steps.setup_python.outputs.python-version }}" >> "$GITHUB_OUTPUT"

funcnodes_span-1.0.0/.github/workflows/py_test.yml

@@ -0,0 +1,28 @@
+# this is an autogenerated file, do not edit it directly or your changes might be lost.
+name: Python Tests
+
+on:
+  push:
+    branches:
+      - dev
+      - test
+
+jobs:
+  test:
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.11", "3.12", "3.13"]
+        os: [ubuntu-latest, windows-latest, macOS-latest]
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Checkout Repository
+        uses: actions/checkout@v3
+
+      - name: Install Package
+        uses: ./.github/actions/install_package
+        with:
+          python_version: ${{ matrix.python-version }}
+
+      - name: Run Tests
+        run: uv run pytest

funcnodes_span-1.0.0/.github/workflows/version_publish_main.yml

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+# this is an autogenerated file, do not edit it directly or your changes might be lost.
+name: version_publish
+
+on:
+  push:
+    branches:
+      - main
+      - master
+
+jobs:
+  version_publish:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+      pull-requests: read
+      id-token: write
+    environment:
+      name: main
+    steps:
+      - name: Checkout Repository
+        uses: actions/checkout@v3
+
+      - name: Install Package
+        uses: ./.github/actions/install_package
+        with:
+          python_version: 3.12
+
+      - name: Run Tests
+        run: uv run pytest
+
+      - name: Get current package version
+        shell: bash
+        id: get_version
+        run: |
+          CURRENT_VERSION=$(uvx poetry version --short)
+          echo "CURRENT_VERSION=${CURRENT_VERSION}" >> $GITHUB_ENV
+          echo "CURRENT_VERSION=${CURRENT_VERSION}"
+
+      - name: Get latest version from PyPI
+        shell: bash
+        id: get_pypi_version
+        run: |
+          PACKAGE_NAME=$(uvx poetry version | awk '{print $1}')
+          LATEST_VERSION=$(curl -s https://pypi.org/pypi/$PACKAGE_NAME/json | jq -r .info.version)
+          echo "LATEST_VERSION=${LATEST_VERSION}" >> $GITHUB_ENV
+          echo "LATEST_VERSION=${LATEST_VERSION}"
+
+      - name: Compare versions
+        shell: bash
+        id: compare_versions
+        run: |
+          if [ "$CURRENT_VERSION" != "$LATEST_VERSION" ]; then
+            echo "should_update=true" >> $GITHUB_OUTPUT
+          else
+            echo "should_update=false" >> $GITHUB_OUTPUT
+          fi
+
+      - name: Package project
+        run: uv build
+
+      - name: Publish package distributions to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          verbose: true
+
+      - name: Check if tag exists
+        shell: bash
+        id: check_tag
+        run: |
+          TAG_EXISTS=$(git tag -l "v$CURRENT_VERSION")
+          if [ "$TAG_EXISTS" ]; then
+            echo "tag_exists=true" >> $GITHUB_OUTPUT
+          else
+            echo "tag_exists=false" >> $GITHUB_OUTPUT
+            fi
+
+      - name: Create new tag
+        shell: bash
+        if: steps.check_tag.outputs.tag_exists == 'false'
+        run: |
+          git config --local user.name "${GITHUB_ACTOR}"
+          git config --local user.email "${GITHUB_ACTOR}@users.noreply.github.com"
+          git tag -a v$CURRENT_VERSION -m "Release version $CURRENT_VERSION"
+          git push origin v$CURRENT_VERSION

funcnodes_span-1.0.0/.gitignore

@@ -0,0 +1,348 @@
+# Created by https://www.toptal.com/developers/gitignore/api/node,python,react,yarn
+# Edit at https://www.toptal.com/developers/gitignore?templates=node,python,react,yarn
+
+### Node ###
+# Logs
+logs
+*.log
+npm-debug.log*
+yarn-debug.log*
+yarn-error.log*
+lerna-debug.log*
+.pnpm-debug.log*
+
+# Diagnostic reports (https://nodejs.org/api/report.html)
+report.[0-9]*.[0-9]*.[0-9]*.[0-9]*.json
+
+# Runtime data
+pids
+*.pid
+*.seed
+*.pid.lock
+
+# Directory for instrumented libs generated by jscoverage/JSCover
+lib-cov
+
+# Coverage directory used by tools like istanbul
+coverage
+*.lcov
+
+# nyc test coverage
+.nyc_output
+
+# Grunt intermediate storage (https://gruntjs.com/creating-plugins#storing-task-files)
+.grunt
+
+# Bower dependency directory (https://bower.io/)
+bower_components
+
+# node-waf configuration
+.lock-wscript
+
+# Compiled binary addons (https://nodejs.org/api/addons.html)
+build/Release
+
+# Dependency directories
+node_modules/
+jspm_packages/
+
+# Snowpack dependency directory (https://snowpack.dev/)
+web_modules/
+
+# TypeScript cache
+*.tsbuildinfo
+
+# Optional npm cache directory
+.npm
+
+# Optional eslint cache
+.eslintcache
+
+# Optional stylelint cache
+.stylelintcache
+
+# Microbundle cache
+.rpt2_cache/
+.rts2_cache_cjs/
+.rts2_cache_es/
+.rts2_cache_umd/
+
+# Optional REPL history
+.node_repl_history
+
+# Output of 'npm pack'
+*.tgz
+
+# Yarn Integrity file
+.yarn-integrity
+
+# dotenv environment variable files
+.env
+.env.development.local
+.env.test.local
+.env.production.local
+.env.local
+
+# parcel-bundler cache (https://parceljs.org/)
+.cache
+.parcel-cache
+
+# Next.js build output
+.next
+out
+
+# Nuxt.js build / generate output
+.nuxt
+
+# Gatsby files
+.cache/
+# Comment in the public line in if your project uses Gatsby and not Next.js
+# https://nextjs.org/blog/next-9-1#public-directory-support
+# public
+
+# vuepress build output
+.vuepress/dist
+
+# vuepress v2.x temp and cache directory
+.temp
+
+# Docusaurus cache and generated files
+.docusaurus
+
+# Serverless directories
+.serverless/
+
+# FuseBox cache
+.fusebox/
+
+# DynamoDB Local files
+.dynamodb/
+
+# TernJS port file
+.tern-port
+
+# Stores VSCode versions used for testing VSCode extensions
+.vscode-test
+
+# yarn v2
+.yarn/cache
+.yarn/unplugged
+.yarn/build-state.yml
+.yarn/install-state.gz
+.pnp.*
+
+### Node Patch ###
+# Serverless Webpack directories
+.webpack/
+
+# Optional stylelint cache
+
+# SvelteKit build / generate output
+.svelte-kit
+
+### Python ###
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/#use-with-ide
+.pdm.toml
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/
+
+### Python Patch ###
+# Poetry local configuration file - https://python-poetry.org/docs/configuration/#local-configuration
+poetry.toml
+
+# ruff
+.ruff_cache/
+
+# LSP config files
+pyrightconfig.json
+
+### react ###
+.DS_*
+**/*.backup.*
+**/*.back.*
+
+node_modules
+
+*.sublime*
+
+psd
+thumb
+sketch
+
+### yarn ###
+# https://yarnpkg.com/getting-started/qa#which-files-should-be-gitignored
+
+.yarn/*
+!.yarn/releases
+!.yarn/patches
+!.yarn/plugins
+!.yarn/sdks
+!.yarn/versions
+
+# if you are NOT using Zero-installs, then:
+# comment the following lines
+#!.yarn/cache
+
+# and uncomment the following lines
+# .pnp.*
+
+# End of https://www.toptal.com/developers/gitignore/api/node,python,react,yarn
+
+/dist/*
+
+/2do.txt
+requirements.txt
+dev/
+/.licensecheck

funcnodes_span-1.0.0/.pre-commit-config.yaml

@@ -0,0 +1,32 @@
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v5.0.0
+    hooks:
+      - id: check-yaml
+      - id: end-of-file-fixer
+      - id: trailing-whitespace
+      - id: no-commit-to-branch
+        args: ["--branch", "main", "--branch", "master", "--branch", "test"]
+
+  - repo: https://github.com/astral-sh/uv-pre-commit
+    # uv version.
+    rev: "0.5.24"
+    hooks:
+      # Update the uv lockfile
+      - id: uv-lock
+
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    # Ruff version.
+    rev: v0.9.3
+    hooks:
+      # Run the linter.
+      - id: ruff
+        args: [--fix]
+      # Run the formatter.
+      - id: ruff-format
+
+  - repo: https://github.com/pycqa/flake8
+    rev: 7.1.1 # pick a git hash / tag to point to
+    hooks:
+      - id: flake8
+        args: ["--config=.flake8"]

funcnodes_span-1.0.0/.vscode/settings.json

@@ -0,0 +1,7 @@
+{
+    "python.testing.pytestArgs": [
+        "tests"
+    ],
+    "python.testing.unittestEnabled": false,
+    "python.testing.pytestEnabled": true
+}

funcnodes_span-1.0.0/CHANGELOG.md

@@ -0,0 +1,37 @@
+## 0.3.7 (2025-06-18)
+
+## v0.3.6 (2025-01-22)
+
+## v0.3.4 (2025-01-16)
+
+## v0.3.3 (2025-01-15)
+
+## v0.3.2 (2024-11-08)
+
+## v0.3.1 (2024-11-07)
+
+## v0.3.0 (2024-10-23)
+
+## v0.2.5 (2024-09-30)
+
+## v0.2.3 (2024-09-16)
+
+## v0.2.2 (2024-09-14)
+
+## v0.2.1 (2024-09-14)
+
+## v0.2.0 (2024-09-10)
+
+## v0.1.22 (2024-09-10)
+
+## v0.1.21 (2024-09-10)
+
+## v0.1.20 (2024-09-10)
+
+## v0.1.19 (2024-09-10)
+
+## v0.1.18 (2024-08-30)
+
+### Fix
+
+- **peak_finder**: 🐛 improve noise handling in peak detection

{funcnodes_span-0.3.7/src/funcnodes_span.egg-info → funcnodes_span-1.0.0}/PKG-INFO

@@ -1,30 +1,30 @@
 Metadata-Version: 2.4
 Name: funcnodes-span
-Version: 0.3.7
+Version: 1.0.0
 Summary: SPectral ANalysis (SPAN) for funcnodes
-Author-email: Kourosh Rezaei <kourosh.rezaei@linkdlab.de>, Julian Kimmig <julian.kimmig@linkdlab.de>
-License: AGPL-3.0
 Project-URL: homepage, https://github.com/Linkdlab/funcnodes_span
 Project-URL: source, https://github.com/Linkdlab/funcnodes_span
 Project-URL: tracker, https://github.com/Linkdlab/funcnodes_span/issues
 Project-URL: download, https://pypi.org/project/funcnodes-span/#files
+Author-email: Kourosh Rezaei <kourosh.rezaei@linkdlab.de>, Julian Kimmig <julian.kimmig@linkdlab.de>
+License: AGPL-3.0
+License-File: LICENSE
 Classifier: Development Status :: 4 - Beta
 Classifier: Intended Audience :: Developers
 Classifier: Intended Audience :: Education
 Classifier: Intended Audience :: Science/Research
 Classifier: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)
 Requires-Python: >=3.11
-Description-Content-Type: text/markdown
-License-File: LICENSE
-Requires-Dist: scipy
-Requires-Dist: lmfit
-Requires-Dist: funcnodes
-Requires-Dist: funcnodes_numpy
-Requires-Dist: funcnodes_pandas
-Requires-Dist: funcnodes_plotly
-Requires-Dist: pybaselines
+Requires-Dist: funcnodes-core>=1.0.4
 Requires-Dist: funcnodes-lmfit>=0.2.0
+Requires-Dist: funcnodes-numpy
+Requires-Dist: funcnodes-pandas
+Requires-Dist: funcnodes-plotly
+Requires-Dist: funcnodes>=1.0.0
+Requires-Dist: lmfit
 Requires-Dist: numba<1.0.0,>=0.61.0
-Dynamic: license-file
+Requires-Dist: pybaselines
+Requires-Dist: scipy
+Description-Content-Type: text/markdown
 
 SPectral ANalysis (SPAN) for funcnodes