fullwave25 1.2.6.dev5__tar.gz → 1.2.6.dev6__tar.gz

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Files changed (75) hide show
  1. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/.bumpversion.toml +1 -1
  2. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/PKG-INFO +1 -1
  3. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/__init__.py +1 -1
  4. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/medium.py +399 -120
  5. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/solver/input_file_writer.py +193 -11
  6. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/solver/pml_builder.py +483 -182
  7. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/solver/solver.py +10 -0
  8. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/utils/relaxation_parameters.py +147 -21
  9. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/pyproject.toml +1 -1
  10. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/uv.lock +1 -1
  11. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/.gitignore +0 -0
  12. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/.pre-commit-config.yaml +0 -0
  13. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/.python-version +0 -0
  14. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/20260120_0844.log +0 -0
  15. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/CITATION.cff +0 -0
  16. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/CLAUDE.md +0 -0
  17. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/CONTRIBUTING.md +0 -0
  18. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/LICENSE +0 -0
  19. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/Makefile +0 -0
  20. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/README.md +0 -0
  21. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/beamformer.m +0 -0
  22. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/debug_solver_bin/fullwave2_2d_2_relax_multi_gpu_cuda124 +0 -0
  23. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/debug_solver_bin/fullwave2_2d_exponential_attenuation_multi_gpu +0 -0
  24. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/debug_solver_bin/fullwave2_2d_exponential_attenuation_multi_gpu_cuda124 +0 -0
  25. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/debug_solver_bin/fullwave2_2d_exponential_attenuation_multi_gpu_cuda124_ +0 -0
  26. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/debug_solver_bin/fullwave2_3d_exponential_attenuation_multi_gpu_cuda124 +0 -0
  27. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/debug_solver_bin/fullwave2_3d_exponential_attenuation_multi_gpu_cuda124_ +0 -0
  28. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/experiments/__init__.py +0 -0
  29. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/experiments/exp_scatterer_diameter.py +0 -0
  30. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/beamformer/__init__.py +0 -0
  31. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/beamformer/beamformer.py +0 -0
  32. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/constants/__init__.py +0 -0
  33. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/constants/material_properties.py +0 -0
  34. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/grid.py +0 -0
  35. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/medium_builder/__init__.py +0 -0
  36. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/medium_builder/domain.py +0 -0
  37. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/medium_builder/medium_builder.py +0 -0
  38. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/medium_builder/presets/__init__.py +0 -0
  39. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/medium_builder/presets/data/.keep +0 -0
  40. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/medium_builder/presets/data/abdominal_wall/i2365f_etfw1.mat +0 -0
  41. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/medium_builder/presets/domain_abdominal_wall.py +0 -0
  42. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/medium_builder/presets/domain_background.py +0 -0
  43. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/medium_builder/presets/domain_scatterer.py +0 -0
  44. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/medium_builder/presets/domain_simple.py +0 -0
  45. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/medium_builder/presets/domain_water_gel.py +0 -0
  46. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/sensor.py +0 -0
  47. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/solver/__init__.py +0 -0
  48. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/solver/binary_manager.py +0 -0
  49. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/solver/bins/_gpu/2d/num_relax=2/fullwave2_2d_2_relax_multi_gpu_cuda118 +0 -0
  50. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/solver/bins/_gpu/2d/num_relax=2/fullwave2_2d_2_relax_multi_gpu_cuda124 +0 -0
  51. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/solver/bins/_gpu/2d/num_relax=2/fullwave2_2d_2_relax_multi_gpu_cuda129 +0 -0
  52. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/solver/bins/_gpu/2d/num_relax=2/fullwave2_2d_2_relax_multi_gpu_cuda130 +0 -0
  53. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/solver/bins/_gpu/3d/num_relax=2/fullwave2_3d_2_relax_multi_gpu_cuda118 +0 -0
  54. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/solver/bins/_gpu/3d/num_relax=2/fullwave2_3d_2_relax_multi_gpu_cuda124 +0 -0
  55. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/solver/bins/_gpu/3d/num_relax=2/fullwave2_3d_2_relax_multi_gpu_cuda129 +0 -0
  56. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/solver/bins/_gpu/3d/num_relax=2/fullwave2_3d_2_relax_multi_gpu_cuda130 +0 -0
  57. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/solver/bins/database/relaxation_params_database_num_relax=2_20260113_0957.mat +0 -0
  58. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/solver/cuda_utils.py +0 -0
  59. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/solver/launcher.py +0 -0
  60. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/solver/utils.py +0 -0
  61. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/source.py +0 -0
  62. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/transducer.py +0 -0
  63. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/utils/__init__.py +0 -0
  64. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/utils/check_functions.py +0 -0
  65. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/utils/coordinates.py +0 -0
  66. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/utils/memory_tempfile.py +0 -0
  67. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/utils/numerical.py +0 -0
  68. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/utils/plot_utils.py +0 -0
  69. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/utils/pulse.py +0 -0
  70. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/utils/scatterer.py +0 -0
  71. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/utils/signal_filter.py +0 -0
  72. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/utils/signal_process.py +0 -0
  73. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/ruff.log +0 -0
  74. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/ruff.toml +0 -0
  75. {fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/signal_filter_example.png +0 -0
{fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/.bumpversion.toml RENAMED
@@ -1,5 +1,5 @@
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  [tool.bumpversion]
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- current_version = "1.2.6-dev5"
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+ current_version = "1.2.6-dev6"
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  parse = """(?x)
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  (?P<major>0|[1-9]\\d*)\\.
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  (?P<minor>0|[1-9]\\d*)\\.
{fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: fullwave25
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- Version: 1.2.6.dev5
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+ Version: 1.2.6.dev6
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  Summary: Fullwave 2.5: Ultrasound wave propagation simulation with heterogeneous power law attenuation modelling capabilities
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  Author: Masashi Sode, Gianmarco Pinton
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  Maintainer: Masashi Sode
{fullwave25-1.2.6.dev5 → fullwave25-1.2.6.dev6}/fullwave/__init__.py RENAMED
@@ -60,7 +60,7 @@ try:
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  __version__ = version("fullwave")
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  except PackageNotFoundError:
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  # Update via bump-my-version, not manually
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- __version__ = "1.2.6-dev5"
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+ __version__ = "1.2.6-dev6"
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  VERSION = __version__ # for convenience
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  logger.info("Fullwave version: %s", __version__)