fullwave25 1.2.6.dev10__tar.gz → 1.2.6.dev11__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (75) hide show
  1. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/.bumpversion.toml +1 -1
  2. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/PKG-INFO +1 -1
  3. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/__init__.py +1 -1
  4. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/utils/pulse.py +1 -12
  5. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/pyproject.toml +1 -1
  6. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/uv.lock +1 -1
  7. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/.gitignore +0 -0
  8. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/.pre-commit-config.yaml +0 -0
  9. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/.python-version +0 -0
  10. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/20260120_0844.log +0 -0
  11. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/CITATION.cff +0 -0
  12. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/CLAUDE.md +0 -0
  13. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/CONTRIBUTING.md +0 -0
  14. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/LICENSE +0 -0
  15. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/Makefile +0 -0
  16. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/README.md +0 -0
  17. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/beamformer.m +0 -0
  18. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/debug_solver_bin/fullwave2_2d_2_relax_multi_gpu_cuda124 +0 -0
  19. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/debug_solver_bin/fullwave2_2d_exponential_attenuation_multi_gpu +0 -0
  20. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/debug_solver_bin/fullwave2_2d_exponential_attenuation_multi_gpu_cuda124 +0 -0
  21. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/debug_solver_bin/fullwave2_2d_exponential_attenuation_multi_gpu_cuda124_ +0 -0
  22. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/debug_solver_bin/fullwave2_3d_exponential_attenuation_multi_gpu_cuda124 +0 -0
  23. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/debug_solver_bin/fullwave2_3d_exponential_attenuation_multi_gpu_cuda124_ +0 -0
  24. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/experiments/__init__.py +0 -0
  25. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/experiments/exp_scatterer_diameter.py +0 -0
  26. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/beamformer/__init__.py +0 -0
  27. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/beamformer/beamformer.py +0 -0
  28. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/constants/__init__.py +0 -0
  29. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/constants/material_properties.py +0 -0
  30. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/grid.py +0 -0
  31. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/medium.py +0 -0
  32. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/medium_builder/__init__.py +0 -0
  33. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/medium_builder/domain.py +0 -0
  34. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/medium_builder/medium_builder.py +0 -0
  35. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/medium_builder/presets/__init__.py +0 -0
  36. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/medium_builder/presets/data/.keep +0 -0
  37. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/medium_builder/presets/data/abdominal_wall/i2365f_etfw1.mat +0 -0
  38. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/medium_builder/presets/domain_abdominal_wall.py +0 -0
  39. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/medium_builder/presets/domain_background.py +0 -0
  40. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/medium_builder/presets/domain_scatterer.py +0 -0
  41. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/medium_builder/presets/domain_simple.py +0 -0
  42. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/medium_builder/presets/domain_water_gel.py +0 -0
  43. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/sensor.py +0 -0
  44. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/solver/__init__.py +0 -0
  45. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/solver/binary_manager.py +0 -0
  46. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/solver/bins/_gpu/2d/num_relax=2/fullwave2_2d_2_relax_multi_gpu_cuda118 +0 -0
  47. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/solver/bins/_gpu/2d/num_relax=2/fullwave2_2d_2_relax_multi_gpu_cuda124 +0 -0
  48. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/solver/bins/_gpu/2d/num_relax=2/fullwave2_2d_2_relax_multi_gpu_cuda129 +0 -0
  49. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/solver/bins/_gpu/2d/num_relax=2/fullwave2_2d_2_relax_multi_gpu_cuda130 +0 -0
  50. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/solver/bins/_gpu/3d/num_relax=2/fullwave2_3d_2_relax_multi_gpu_cuda118 +0 -0
  51. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/solver/bins/_gpu/3d/num_relax=2/fullwave2_3d_2_relax_multi_gpu_cuda124 +0 -0
  52. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/solver/bins/_gpu/3d/num_relax=2/fullwave2_3d_2_relax_multi_gpu_cuda129 +0 -0
  53. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/solver/bins/_gpu/3d/num_relax=2/fullwave2_3d_2_relax_multi_gpu_cuda130 +0 -0
  54. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/solver/bins/database/relaxation_params_database_num_relax=2_20260113_0957.mat +0 -0
  55. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/solver/cuda_utils.py +0 -0
  56. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/solver/input_file_writer.py +0 -0
  57. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/solver/launcher.py +0 -0
  58. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/solver/pml_builder.py +0 -0
  59. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/solver/solver.py +0 -0
  60. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/solver/utils.py +0 -0
  61. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/source.py +0 -0
  62. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/transducer.py +0 -0
  63. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/utils/__init__.py +0 -0
  64. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/utils/check_functions.py +0 -0
  65. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/utils/coordinates.py +0 -0
  66. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/utils/memory_tempfile.py +0 -0
  67. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/utils/numerical.py +0 -0
  68. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/utils/plot_utils.py +0 -0
  69. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/utils/relaxation_parameters.py +0 -0
  70. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/utils/scatterer.py +0 -0
  71. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/utils/signal_filter.py +0 -0
  72. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/fullwave/utils/signal_process.py +0 -0
  73. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/ruff.log +0 -0
  74. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/ruff.toml +0 -0
  75. {fullwave25-1.2.6.dev10 → fullwave25-1.2.6.dev11}/signal_filter_example.png +0 -0
@@ -1,5 +1,5 @@
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  [tool.bumpversion]
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- current_version = "1.2.6-dev10"
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+ current_version = "1.2.6-dev11"
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  parse = """(?x)
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  (?P<major>0|[1-9]\\d*)\\.
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  (?P<minor>0|[1-9]\\d*)\\.
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: fullwave25
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- Version: 1.2.6.dev10
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+ Version: 1.2.6.dev11
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  Summary: Fullwave 2.5: Ultrasound wave propagation simulation with heterogeneous power law attenuation modelling capabilities
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  Author: Masashi Sode, Gianmarco Pinton
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  Maintainer: Masashi Sode
@@ -60,7 +60,7 @@ try:
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  __version__ = version("fullwave")
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  except PackageNotFoundError:
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  # Update via bump-my-version, not manually
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- __version__ = "1.2.6-dev10"
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+ __version__ = "1.2.6-dev11"
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  VERSION = __version__ # for convenience
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  logger.info("Fullwave version: %s", __version__)
@@ -61,7 +61,6 @@ def gaussian_modulated_sinusoidal_signal(
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  dt = duration / nt
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  t_offset = ncycles / f0 + delay_sec
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63
 
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- phase_correction = 0.0
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  if i_layer is not None:
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  if dt_for_layer_delay is None:
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  error_msg = "dt_for_layer_delay must be provided if i_layer is provided"
@@ -71,16 +70,6 @@ def gaussian_modulated_sinusoidal_signal(
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  raise ValueError(error_msg)
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  layer_delay_sec = (dt_for_layer_delay / cfl_for_layer_delay) * i_layer
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  t_offset += layer_delay_sec
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- # Correct carrier phase for fractional-sample delays.
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- # A continuous time shift of a fractional number of samples changes
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- # the carrier phase at each discrete sample point, causing sign
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- # inversion and wrong peak positions. Remove the fractional phase
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- # offset so the carrier stays on the same discrete phase grid as
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- # the base (i_layer=0) signal.
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- delay_samples = layer_delay_sec / dt
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- fractional_samples = delay_samples - round(delay_samples)
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- phase_correction = 2.0 * np.pi * f0 * fractional_samples * dt
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-
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  t = np.arange(nt, dtype=dtype) * dt - t_offset
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  omega0 = 2.0 * np.pi * f0
@@ -99,4 +88,4 @@ def gaussian_modulated_sinusoidal_signal(
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  env = np.exp(-(a_sq**drop_off))
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  # Compute final signal with phase-corrected carrier
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- return env * np.sin(w_t + phase_correction) * p0
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+ return env * np.sin(w_t) * p0
@@ -1,6 +1,6 @@
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  [project]
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  name = "fullwave25"
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- version = "1.2.6-dev10" # Update via bump-my-version, not manually
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+ version = "1.2.6-dev11" # Update via bump-my-version, not manually
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  description = "Fullwave 2.5: Ultrasound wave propagation simulation with heterogeneous power law attenuation modelling capabilities"
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  readme = "README.md"
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  requires-python = ">=3.10"
@@ -735,7 +735,7 @@ wheels = [
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  [[package]]
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  name = "fullwave25"
738
- version = "1.2.6.dev10"
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+ version = "1.2.6.dev11"
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  source = { editable = "." }
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  dependencies = [
741
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  { name = "matplotlib" },