fujicv 1.0.0__tar.gz

fujicv-1.0.0/LICENSE

@@ -0,0 +1,173 @@
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fujicv-1.0.0/PKG-INFO

@@ -0,0 +1,254 @@
+Metadata-Version: 2.4
+Name: fujicv
+Version: 1.0.0
+Summary: Open-source Python package for image classification and regression built on timm + torchvision
+Author: FujiCV Contributors
+License: Apache-2.0
+Project-URL: Homepage, https://github.com/fujicv/fujicv
+Project-URL: Repository, https://github.com/fujicv/fujicv
+Project-URL: Bug Tracker, https://github.com/fujicv/fujicv/issues
+Keywords: deep-learning,computer-vision,image-classification,timm,pytorch
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Requires-Python: >=3.9
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: torch>=2.0
+Requires-Dist: torchvision>=0.15
+Requires-Dist: timm>=0.9
+Requires-Dist: albumentations>=1.3
+Requires-Dist: scikit-learn>=1.3
+Requires-Dist: matplotlib>=3.7
+Requires-Dist: seaborn>=0.12
+Requires-Dist: pandas>=2.0
+Requires-Dist: pyyaml>=6.0
+Requires-Dist: iterative-stratification>=0.1.7
+Requires-Dist: numpy>=1.24
+Requires-Dist: Pillow>=9.0
+Requires-Dist: tqdm>=4.65
+Provides-Extra: wandb
+Requires-Dist: wandb>=0.15; extra == "wandb"
+Provides-Extra: onnx
+Requires-Dist: onnxruntime>=1.15; extra == "onnx"
+Requires-Dist: onnx>=1.14; extra == "onnx"
+Provides-Extra: dev
+Requires-Dist: pytest>=7.4; extra == "dev"
+Requires-Dist: pytest-cov>=4.1; extra == "dev"
+Requires-Dist: ruff>=0.1; extra == "dev"
+Requires-Dist: mypy>=1.5; extra == "dev"
+Requires-Dist: detect-secrets>=1.4; extra == "dev"
+Requires-Dist: types-PyYAML; extra == "dev"
+Requires-Dist: types-seaborn; extra == "dev"
+Provides-Extra: test
+Requires-Dist: pytest>=7.4; extra == "test"
+Requires-Dist: pytest-cov>=4.1; extra == "test"
+Provides-Extra: all
+Requires-Dist: fujicv[dev,onnx,wandb]; extra == "all"
+Dynamic: license-file
+
+# FujiCV
+
+**Open-source Python package for image classification and regression, built on timm + torchvision.**
+
+[![CI](https://github.com/fujicv/fujicv/actions/workflows/ci.yml/badge.svg)](https://github.com/fujicv/fujicv/actions)
+[![Python 3.9+](https://img.shields.io/badge/python-3.9%2B-blue)](https://www.python.org/)
+[![License: MIT](https://img.shields.io/badge/License-MIT-green)](LICENSE)
+
+---
+
+## Features
+
+- **Backbone factory** — instantly load any timm or torchvision model with a
+  single call; classifier head auto-stripped, output dimension auto-detected.
+- **Task heads** — ClassificationHead, RegressionHead, MultiLabelHead.
+- **Custom layers** — LinearBNDropout, GeM pooling, AttentionPool, SqueezeExcite.
+- **ModelBuilder** — assemble backbone + custom layers + head; dummy forward
+  pass validates shapes at build time.
+- **Albumentations pipelines** — light / medium / heavy augmentation presets,
+  ImageNet normalisation, deterministic val transforms.
+- **CSVImageDataset** — reads any CSV-driven image dataset; pre-validates files,
+  skips missing with a warning; supports classification, regression, multilabel.
+- **Loss functions** — 13 losses across classification, regression, and multilabel
+  tasks, all registered in `LOSS_REGISTRY`.
+- **Metrics** — 16 metrics across all tasks, registered in `METRIC_REGISTRY`.
+- **Trainer** — AMP, gradient clipping, early stopping, best/last checkpointing,
+  history CSV.
+- **WandbLogger** — W&B integration via env-var only (`WANDB_API_KEY`); graceful
+  no-op when W&B is absent.
+- **Evaluation** — confusion matrix, ROC/PR curves, t-SNE, Grad-CAM (CNN),
+  attention rollout (ViT).
+- **Inference** — `Predictor.from_checkpoint` for single image and batch inference.
+- **ONNX export** — export and numeric verification.
+
+---
+
+## Installation
+
+```bash
+# Core (CPU)
+pip install fujicv
+
+# With W&B logging
+pip install "fujicv[wandb]"
+
+# With ONNX export
+pip install "fujicv[onnx]"
+
+# Dev / testing
+pip install "fujicv[dev]"
+```
+
+> **PyTorch is not included as a transitive dependency on PyPI.**
+> Install it separately following the [official instructions](https://pytorch.org/get-started/locally/)
+> to pick the right CUDA version.
+
+---
+
+## Quick Start
+
+### 1. Classification
+
+```python
+from fujicv.models.builder import ModelBuilder
+from fujicv.losses import get_loss
+from fujicv.metrics import get_metric
+from fujicv.engine.trainer import Trainer
+from fujicv.data import build_splits, build_dataloaders
+from fujicv.utils import load_config, set_seed
+
+set_seed(42)
+cfg = load_config("examples/configs/classification_example.yaml")
+
+train_df, val_df, test_df = build_splits(cfg["dataset"])
+train_loader, val_loader, _ = build_dataloaders(
+    train_df, val_df, test_df, cfg["dataset"], cfg["augmentation"]
+)
+
+model = ModelBuilder(
+    backbone_name="resnet50",
+    task="classification",
+    num_outputs=10,
+    pretrained=True,
+).build()
+
+import torch.optim as optim
+
+trainer = Trainer(
+    model=model,
+    train_loader=train_loader,
+    val_loader=val_loader,
+    loss_fn=get_loss("LabelSmoothingCE", {"smoothing": 0.1}),
+    metrics={"Accuracy": get_metric("Accuracy"), "F1": get_metric("F1")},
+    optimizer=optim.AdamW(model.parameters(), lr=3e-4),
+    epochs=30,
+    task="classification",
+    output_dir="outputs/",
+)
+history = trainer.train()
+```
+
+### 2. Using the example scripts
+
+```bash
+# Train
+python examples/train.py --config examples/configs/classification_example.yaml
+
+# Evaluate (with attention maps)
+python examples/evaluate.py \
+    --config examples/configs/classification_example.yaml \
+    --checkpoint outputs/classification/best.pt \
+    --with-attention-maps
+```
+
+### 3. Inference
+
+```python
+from fujicv.inference import Predictor
+from fujicv.models.builder import ModelBuilder
+
+model_skeleton = ModelBuilder(
+    backbone_name="resnet50", task="classification", num_outputs=10, pretrained=False
+).build()
+
+predictor = Predictor.from_checkpoint("outputs/classification/best.pt", model=model_skeleton)
+label, confidence = predictor.predict("path/to/image.jpg")
+print(f"Predicted: {label}  ({confidence:.1%})")
+```
+
+### 4. ONNX Export
+
+```python
+from fujicv.export import to_onnx, verify_onnx
+
+to_onnx(model, "model.onnx")
+verify_onnx(model, "model.onnx")
+```
+
+---
+
+## Package Layout
+
+```
+fujicv/
+  models/       backbone factory, heads, custom layers, ModelBuilder
+  data/         CSVImageDataset, transforms, dataloader factory
+  losses/       13 loss functions + registry
+  metrics/      16 metric callables + registry
+  engine/       Trainer, WandbLogger, callbacks
+  eval/         plots, report, ROC/PR curves, t-SNE, attention maps
+  utils/        Registry, set_seed, config loader
+  inference/    Predictor
+  export/       ONNX export & verification
+tests/
+examples/
+  configs/      YAML configs for each task type
+  train.py
+  evaluate.py
+```
+
+---
+
+## Supported Tasks
+
+| Task | Loss examples | Metric examples |
+|------|--------------|----------------|
+| Classification / Multiclass | CrossEntropyLoss, FocalLoss, LabelSmoothingCE | Accuracy, F1, AUROC |
+| Regression | MSELoss, HuberLoss, QuantileLoss | MAE, RMSE, R2Score |
+| Multi-label | BCEWithLogitsLoss, AsymmetricLoss, FocalBCELoss | HammingLoss, mAP, PerLabelAUROC |
+
+---
+
+## Security
+
+See [SECURITY.md](SECURITY.md) for the full policy.  Key points:
+
+- No hardcoded credentials anywhere in the codebase.
+- W&B API key read from `WANDB_API_KEY` environment variable only.
+- Loss/metric functions are pure tensor operations with no network calls.
+
+---
+
+## Contributing
+
+1. Fork the repository and create a feature branch.
+2. Install in editable mode: `pip install -e ".[dev]"`
+3. Run the checks locally:
+   ```bash
+   ruff check fujicv/ tests/
+   mypy fujicv/
+   pytest tests/
+   detect-secrets scan
+   ```
+4. Open a pull request — CI will run automatically.
+
+---
+
+## License
+
+[MIT](LICENSE) — Copyright (c) 2024 FujiCV Contributors.

fujicv-1.0.0/README.md

@@ -0,0 +1,200 @@
+# FujiCV
+
+**Open-source Python package for image classification and regression, built on timm + torchvision.**
+
+[![CI](https://github.com/fujicv/fujicv/actions/workflows/ci.yml/badge.svg)](https://github.com/fujicv/fujicv/actions)
+[![Python 3.9+](https://img.shields.io/badge/python-3.9%2B-blue)](https://www.python.org/)
+[![License: MIT](https://img.shields.io/badge/License-MIT-green)](LICENSE)
+
+---
+
+## Features
+
+- **Backbone factory** — instantly load any timm or torchvision model with a
+  single call; classifier head auto-stripped, output dimension auto-detected.
+- **Task heads** — ClassificationHead, RegressionHead, MultiLabelHead.
+- **Custom layers** — LinearBNDropout, GeM pooling, AttentionPool, SqueezeExcite.
+- **ModelBuilder** — assemble backbone + custom layers + head; dummy forward
+  pass validates shapes at build time.
+- **Albumentations pipelines** — light / medium / heavy augmentation presets,
+  ImageNet normalisation, deterministic val transforms.
+- **CSVImageDataset** — reads any CSV-driven image dataset; pre-validates files,
+  skips missing with a warning; supports classification, regression, multilabel.
+- **Loss functions** — 13 losses across classification, regression, and multilabel
+  tasks, all registered in `LOSS_REGISTRY`.
+- **Metrics** — 16 metrics across all tasks, registered in `METRIC_REGISTRY`.
+- **Trainer** — AMP, gradient clipping, early stopping, best/last checkpointing,
+  history CSV.
+- **WandbLogger** — W&B integration via env-var only (`WANDB_API_KEY`); graceful
+  no-op when W&B is absent.
+- **Evaluation** — confusion matrix, ROC/PR curves, t-SNE, Grad-CAM (CNN),
+  attention rollout (ViT).
+- **Inference** — `Predictor.from_checkpoint` for single image and batch inference.
+- **ONNX export** — export and numeric verification.
+
+---
+
+## Installation
+
+```bash
+# Core (CPU)
+pip install fujicv
+
+# With W&B logging
+pip install "fujicv[wandb]"
+
+# With ONNX export
+pip install "fujicv[onnx]"
+
+# Dev / testing
+pip install "fujicv[dev]"
+```
+
+> **PyTorch is not included as a transitive dependency on PyPI.**
+> Install it separately following the [official instructions](https://pytorch.org/get-started/locally/)
+> to pick the right CUDA version.
+
+---
+
+## Quick Start
+
+### 1. Classification
+
+```python
+from fujicv.models.builder import ModelBuilder
+from fujicv.losses import get_loss
+from fujicv.metrics import get_metric
+from fujicv.engine.trainer import Trainer
+from fujicv.data import build_splits, build_dataloaders
+from fujicv.utils import load_config, set_seed
+
+set_seed(42)
+cfg = load_config("examples/configs/classification_example.yaml")
+
+train_df, val_df, test_df = build_splits(cfg["dataset"])
+train_loader, val_loader, _ = build_dataloaders(
+    train_df, val_df, test_df, cfg["dataset"], cfg["augmentation"]
+)
+
+model = ModelBuilder(
+    backbone_name="resnet50",
+    task="classification",
+    num_outputs=10,
+    pretrained=True,
+).build()
+
+import torch.optim as optim
+
+trainer = Trainer(
+    model=model,
+    train_loader=train_loader,
+    val_loader=val_loader,
+    loss_fn=get_loss("LabelSmoothingCE", {"smoothing": 0.1}),
+    metrics={"Accuracy": get_metric("Accuracy"), "F1": get_metric("F1")},
+    optimizer=optim.AdamW(model.parameters(), lr=3e-4),
+    epochs=30,
+    task="classification",
+    output_dir="outputs/",
+)
+history = trainer.train()
+```
+
+### 2. Using the example scripts
+
+```bash
+# Train
+python examples/train.py --config examples/configs/classification_example.yaml
+
+# Evaluate (with attention maps)
+python examples/evaluate.py \
+    --config examples/configs/classification_example.yaml \
+    --checkpoint outputs/classification/best.pt \
+    --with-attention-maps
+```
+
+### 3. Inference
+
+```python
+from fujicv.inference import Predictor
+from fujicv.models.builder import ModelBuilder
+
+model_skeleton = ModelBuilder(
+    backbone_name="resnet50", task="classification", num_outputs=10, pretrained=False
+).build()
+
+predictor = Predictor.from_checkpoint("outputs/classification/best.pt", model=model_skeleton)
+label, confidence = predictor.predict("path/to/image.jpg")
+print(f"Predicted: {label}  ({confidence:.1%})")
+```
+
+### 4. ONNX Export
+
+```python
+from fujicv.export import to_onnx, verify_onnx
+
+to_onnx(model, "model.onnx")
+verify_onnx(model, "model.onnx")
+```
+
+---
+
+## Package Layout
+
+```
+fujicv/
+  models/       backbone factory, heads, custom layers, ModelBuilder
+  data/         CSVImageDataset, transforms, dataloader factory
+  losses/       13 loss functions + registry
+  metrics/      16 metric callables + registry
+  engine/       Trainer, WandbLogger, callbacks
+  eval/         plots, report, ROC/PR curves, t-SNE, attention maps
+  utils/        Registry, set_seed, config loader
+  inference/    Predictor
+  export/       ONNX export & verification
+tests/
+examples/
+  configs/      YAML configs for each task type
+  train.py
+  evaluate.py
+```
+
+---
+
+## Supported Tasks
+
+| Task | Loss examples | Metric examples |
+|------|--------------|----------------|
+| Classification / Multiclass | CrossEntropyLoss, FocalLoss, LabelSmoothingCE | Accuracy, F1, AUROC |
+| Regression | MSELoss, HuberLoss, QuantileLoss | MAE, RMSE, R2Score |
+| Multi-label | BCEWithLogitsLoss, AsymmetricLoss, FocalBCELoss | HammingLoss, mAP, PerLabelAUROC |
+
+---
+
+## Security
+
+See [SECURITY.md](SECURITY.md) for the full policy.  Key points:
+
+- No hardcoded credentials anywhere in the codebase.
+- W&B API key read from `WANDB_API_KEY` environment variable only.
+- Loss/metric functions are pure tensor operations with no network calls.
+
+---
+
+## Contributing
+
+1. Fork the repository and create a feature branch.
+2. Install in editable mode: `pip install -e ".[dev]"`
+3. Run the checks locally:
+   ```bash
+   ruff check fujicv/ tests/
+   mypy fujicv/
+   pytest tests/
+   detect-secrets scan
+   ```
+4. Open a pull request — CI will run automatically.
+
+---
+
+## License
+
+[MIT](LICENSE) — Copyright (c) 2024 FujiCV Contributors.

fujicv-1.0.0/fujicv/__init__.py

@@ -0,0 +1,10 @@
+"""FujiCV — image classification and regression built on timm + torchvision."""
+
+__version__ = "1.0.0"
+__author__ = "FujiCV Contributors"
+
+from fujicv.data.datasets import get_default_dataset  # noqa: F401
+from fujicv.utils.registry import Registry  # noqa: F401
+from fujicv.utils.seed import get_device, set_seed  # noqa: F401
+
+__all__ = ["__version__", "__author__", "get_device", "set_seed", "get_default_dataset"]

fujicv-1.0.0/fujicv/data/__init__.py

@@ -0,0 +1,13 @@
+"""Data loading, splitting, and augmentation."""
+
+from fujicv.data.dataloader import build_dataloaders
+from fujicv.data.datasets import CSVImageDataset, build_splits
+from fujicv.data.transforms import get_train_transforms, get_val_transforms
+
+__all__ = [
+    "CSVImageDataset",
+    "build_splits",
+    "build_dataloaders",
+    "get_train_transforms",
+    "get_val_transforms",
+]