freealg 0.6.2__tar.gz → 0.6.3__tar.gz

{freealg-0.6.2 → freealg-0.6.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: freealg
-Version: 0.6.2
+Version: 0.6.3
 Summary: Free probability for large matrices
 Home-page: https://github.com/ameli/freealg
 Download-URL: https://github.com/ameli/freealg/archive/main.zip
@@ -163,19 +163,17 @@ code, we also welcome feature requests and bug reports.
 How to Cite
 ===========
 
-If you use this work, please cite our `arXiv paper <https://arxiv.org/abs/2506.11994>`__.
+If you use this work, please cite our `paper <https://openreview.net/pdf?id=2CeGVUpOd7>`__.
 
   .. code::
 
-      @article{spectral2025,
-          title={Spectral Estimation with Free Decompression},
-          author={Siavash Ameli and Chris van der Heide and Liam Hodgkinson and Michael W. Mahoney},
-          year={2025},
-          eprint={2506.11994},
-          archivePrefix={arXiv},
-          primaryClass={stat.ML},
-          url={https://arxiv.org/abs/2506.11994},
-          journal={arXiv preprint arXiv:2506.11994},
+      @inproceedings{
+            AMELI-2025,
+            title={Spectral Estimation with Free Decompression},
+            author={Siavash Ameli and Chris van der Heide and Liam Hodgkinson and Michael W. Mahoney},
+            booktitle={The Thirty-ninth Annual Conference on Neural Information Processing Systems},
+            year={2025},
+            url={https://openreview.net/forum?id=2CeGVUpOd7}
       }
 
 

{freealg-0.6.2 → freealg-0.6.3}/README.rst

@@ -87,19 +87,17 @@ code, we also welcome feature requests and bug reports.
 How to Cite
 ===========
 
-If you use this work, please cite our `arXiv paper <https://arxiv.org/abs/2506.11994>`__.
+If you use this work, please cite our `paper <https://openreview.net/pdf?id=2CeGVUpOd7>`__.
 
   .. code::
 
-      @article{spectral2025,
-          title={Spectral Estimation with Free Decompression},
-          author={Siavash Ameli and Chris van der Heide and Liam Hodgkinson and Michael W. Mahoney},
-          year={2025},
-          eprint={2506.11994},
-          archivePrefix={arXiv},
-          primaryClass={stat.ML},
-          url={https://arxiv.org/abs/2506.11994},
-          journal={arXiv preprint arXiv:2506.11994},
+      @inproceedings{
+            AMELI-2025,
+            title={Spectral Estimation with Free Decompression},
+            author={Siavash Ameli and Chris van der Heide and Liam Hodgkinson and Michael W. Mahoney},
+            booktitle={The Thirty-ninth Annual Conference on Neural Information Processing Systems},
+            year={2025},
+            url={https://openreview.net/forum?id=2CeGVUpOd7}
       }
 
 

freealg-0.6.3/freealg/__version__.py

@@ -0,0 +1 @@
+__version__ = "0.6.3"

{freealg-0.6.2 → freealg-0.6.3}/freealg/_decompress.py

@@ -855,16 +855,6 @@ def decompress(freeform, alpha, x, roots_init=None, method='newton',
     density
     stieltjes
 
-    Notes
-    -----
-
-    Work in progress.
-
-    References
-    ----------
-
-    .. [1] tbd
-
     Examples
     --------
 

{freealg-0.6.2 → freealg-0.6.3}/freealg/_pade.py

@@ -13,7 +13,6 @@
 
 import numpy
 from numpy.linalg import lstsq
-from itertools import product
 from scipy.optimize import least_squares, differential_evolution
 
 __all__ = ['fit_pade', 'eval_pade']

{freealg-0.6.2 → freealg-0.6.3}/freealg/_util.py

@@ -127,26 +127,37 @@ def kde(eig, xs, lam_m, lam_p, h, kernel='beta', plot=False):
     freealg.supp
     freealg.sample
 
+    References
+    ----------
+
+    .. [1] `R-package documentation for Beta kernel
+           <https://search.r-project.org/CRAN/refmans/DELTD/html/Beta.html>`__
+
+    .. [2] Chen, S. X. (1999). Beta Kernel estimators for density functions.
+           *Computational Statistics and Data Analysis* 31 p. 131--145.
+
     Notes
     -----
 
-    In Beta kernel density estimation, the shape parameters "a" and "b" of the
-    Beta(a, b)) distribution are computed for each data point "u" as:
+    In Beta kernel density estimation, the shape parameters :math:`a` and
+    :math:`b` of the :math:`\\mathrm{Beta}(a, b)` distribution are computed
+    for each data point :math:`u` as:
+
+    .. math::
 
         a = (u / h) + 1.0
         b = ((1.0 - u) / h) + 1.0
 
-    This is a standard way of using Beta kernel (see R-package documentation:
-    https://search.r-project.org/CRAN/refmans/DELTD/html/Beta.html
+    This is a standard way of using Beta kernel (see R-package documentation
+    [1]_). These equations are derived from *moment matching* method, where
 
-    These equations are derived from "moment matching" method, where
+    .. math::
 
-        Mean(Beta(a,b)) = u
-        Var(Beta(a,b)) = (1-u) u h
+        \\mathrm{Mean}(\\mathrm{Beta}(a,b)) = u
+        \\mathrm{Var}(\\mathrm{Beta}(a,b)) = (1-u) u h
 
-    Solving these two equations for "a" and "b" yields the relations above.
-    See paper (page 134)
-    https://www.songxichen.com/Uploads/Files/Publication/Chen-CSD-99.pdf
+    Solving these two equations for :math:`a` and :math:`b` yields the
+    relations above. See [2]_ (page 134).
     """
 
     if kernel == 'gaussian':

{freealg-0.6.2 → freealg-0.6.3}/freealg/distributions/_marchenko_pastur.py

@@ -283,8 +283,8 @@ class MarchenkoPastur(object):
         if numpy.any(not_mask):
 
             sign = -1 if alt_branch else 1
-            A = self.lam * sigma**2 * z
-            B = z - sigma**2 * (1 - self.lam)
+            A = self.lam * sigma**2 * z[not_mask]
+            B = z[not_mask] - sigma**2 * (1 - self.lam)
             D = B**2 - 4 * A
             sqrtD = numpy.sqrt(D)
             m1 = (-B + sqrtD) / (2 * A)

{freealg-0.6.2 → freealg-0.6.3}/freealg/freeform.py

@@ -74,16 +74,6 @@ class FreeForm(object):
         Parameters for the :func:`supp` function can also be prescribed
         here when ``support=None``.
 
-    Notes
-    -----
-
-    TBD
-
-    References
-    ----------
-
-    .. [1] Reference.
-
     Attributes
     ----------
 
@@ -749,16 +739,6 @@ class FreeForm(object):
         density
         hilbert
 
-        Notes
-        -----
-
-        Notes.
-
-        References
-        ----------
-
-        .. [1] tbd
-
         Examples
         --------
 
@@ -973,16 +953,6 @@ class FreeForm(object):
         density
         stieltjes
 
-        Notes
-        -----
-
-        Work in progress.
-
-        References
-        ----------
-
-        .. [1] tbd
-
         Examples
         --------
 

{freealg-0.6.2 → freealg-0.6.3}/freealg.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: freealg
-Version: 0.6.2
+Version: 0.6.3
 Summary: Free probability for large matrices
 Home-page: https://github.com/ameli/freealg
 Download-URL: https://github.com/ameli/freealg/archive/main.zip
@@ -163,19 +163,17 @@ code, we also welcome feature requests and bug reports.
 How to Cite
 ===========
 
-If you use this work, please cite our `arXiv paper <https://arxiv.org/abs/2506.11994>`__.
+If you use this work, please cite our `paper <https://openreview.net/pdf?id=2CeGVUpOd7>`__.
 
   .. code::
 
-      @article{spectral2025,
-          title={Spectral Estimation with Free Decompression},
-          author={Siavash Ameli and Chris van der Heide and Liam Hodgkinson and Michael W. Mahoney},
-          year={2025},
-          eprint={2506.11994},
-          archivePrefix={arXiv},
-          primaryClass={stat.ML},
-          url={https://arxiv.org/abs/2506.11994},
-          journal={arXiv preprint arXiv:2506.11994},
+      @inproceedings{
+            AMELI-2025,
+            title={Spectral Estimation with Free Decompression},
+            author={Siavash Ameli and Chris van der Heide and Liam Hodgkinson and Michael W. Mahoney},
+            booktitle={The Thirty-ninth Annual Conference on Neural Information Processing Systems},
+            year={2025},
+            url={https://openreview.net/forum?id=2CeGVUpOd7}
       }
 
 

freealg-0.6.2/freealg/__version__.py

@@ -1 +0,0 @@
-__version__ = "0.6.2"