fractal-server 2.4.0a1__tar.gz → 2.4.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (214) hide show
  1. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/PKG-INFO +1 -1
  2. fractal_server-2.4.1/fractal_server/__init__.py +1 -0
  3. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/auth/group.py +18 -1
  4. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/auth/users.py +25 -1
  5. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/user.py +4 -0
  6. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/user_group.py +8 -0
  7. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/pyproject.toml +2 -2
  8. fractal_server-2.4.0a1/fractal_server/__init__.py +0 -1
  9. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/LICENSE +0 -0
  10. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/README.md +0 -0
  11. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/__main__.py +0 -0
  12. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/alembic.ini +0 -0
  13. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/__init__.py +0 -0
  14. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/db/__init__.py +0 -0
  15. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/__init__.py +0 -0
  16. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/linkusergroup.py +0 -0
  17. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/linkuserproject.py +0 -0
  18. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/security.py +0 -0
  19. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/v1/__init__.py +0 -0
  20. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/v1/dataset.py +0 -0
  21. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/v1/job.py +0 -0
  22. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/v1/project.py +0 -0
  23. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/v1/state.py +0 -0
  24. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/v1/task.py +0 -0
  25. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/v1/workflow.py +0 -0
  26. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/v2/__init__.py +0 -0
  27. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/v2/collection_state.py +0 -0
  28. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/v2/dataset.py +0 -0
  29. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/v2/job.py +0 -0
  30. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/v2/project.py +0 -0
  31. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/v2/task.py +0 -0
  32. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/v2/workflow.py +0 -0
  33. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/models/v2/workflowtask.py +0 -0
  34. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/__init__.py +0 -0
  35. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/admin/__init__.py +0 -0
  36. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/admin/v1.py +0 -0
  37. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/admin/v2.py +0 -0
  38. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/__init__.py +0 -0
  39. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v1/__init__.py +0 -0
  40. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v1/_aux_functions.py +0 -0
  41. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v1/dataset.py +0 -0
  42. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v1/job.py +0 -0
  43. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v1/project.py +0 -0
  44. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v1/task.py +0 -0
  45. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v1/task_collection.py +0 -0
  46. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v1/workflow.py +0 -0
  47. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v1/workflowtask.py +0 -0
  48. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v2/__init__.py +0 -0
  49. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v2/_aux_functions.py +0 -0
  50. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v2/dataset.py +0 -0
  51. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v2/images.py +0 -0
  52. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v2/job.py +0 -0
  53. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v2/project.py +0 -0
  54. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v2/status.py +0 -0
  55. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v2/submit.py +0 -0
  56. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v2/task.py +0 -0
  57. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v2/task_collection.py +0 -0
  58. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v2/task_collection_custom.py +0 -0
  59. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v2/task_legacy.py +0 -0
  60. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v2/workflow.py +0 -0
  61. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/api/v2/workflowtask.py +0 -0
  62. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/auth/__init__.py +0 -0
  63. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/auth/_aux_auth.py +0 -0
  64. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/auth/current_user.py +0 -0
  65. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/auth/group_names.py +0 -0
  66. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/auth/login.py +0 -0
  67. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/auth/oauth.py +0 -0
  68. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/auth/register.py +0 -0
  69. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/auth/router.py +0 -0
  70. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/aux/__init__.py +0 -0
  71. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/aux/_job.py +0 -0
  72. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/routes/aux/_runner.py +0 -0
  73. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/.gitignore +0 -0
  74. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/__init__.py +0 -0
  75. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/async_wrap.py +0 -0
  76. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/components.py +0 -0
  77. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/compress_folder.py +0 -0
  78. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/exceptions.py +0 -0
  79. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/executors/__init__.py +0 -0
  80. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/executors/slurm/__init__.py +0 -0
  81. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/executors/slurm/_batching.py +0 -0
  82. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/executors/slurm/_slurm_config.py +0 -0
  83. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/executors/slurm/remote.py +0 -0
  84. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/executors/slurm/ssh/__init__.py +0 -0
  85. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/executors/slurm/ssh/_executor_wait_thread.py +0 -0
  86. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/executors/slurm/ssh/_slurm_job.py +0 -0
  87. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/executors/slurm/ssh/executor.py +0 -0
  88. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/executors/slurm/sudo/__init__.py +0 -0
  89. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/executors/slurm/sudo/_check_jobs_status.py +0 -0
  90. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/executors/slurm/sudo/_executor_wait_thread.py +0 -0
  91. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/executors/slurm/sudo/_subprocess_run_as_user.py +0 -0
  92. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/executors/slurm/sudo/executor.py +0 -0
  93. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/extract_archive.py +0 -0
  94. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/filenames.py +0 -0
  95. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/run_subprocess.py +0 -0
  96. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/set_start_and_last_task_index.py +0 -0
  97. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/shutdown.py +0 -0
  98. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/task_files.py +0 -0
  99. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v1/__init__.py +0 -0
  100. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v1/_common.py +0 -0
  101. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v1/_local/__init__.py +0 -0
  102. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v1/_local/_local_config.py +0 -0
  103. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v1/_local/_submit_setup.py +0 -0
  104. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v1/_local/executor.py +0 -0
  105. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v1/_slurm/__init__.py +0 -0
  106. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v1/_slurm/_submit_setup.py +0 -0
  107. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v1/_slurm/get_slurm_config.py +0 -0
  108. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v1/common.py +0 -0
  109. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v1/handle_failed_job.py +0 -0
  110. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/__init__.py +0 -0
  111. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/_local/__init__.py +0 -0
  112. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/_local/_local_config.py +0 -0
  113. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/_local/_submit_setup.py +0 -0
  114. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/_local/executor.py +0 -0
  115. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/_local_experimental/__init__.py +0 -0
  116. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/_local_experimental/_local_config.py +0 -0
  117. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/_local_experimental/_submit_setup.py +0 -0
  118. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/_local_experimental/executor.py +0 -0
  119. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/_slurm_common/__init__.py +0 -0
  120. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/_slurm_common/get_slurm_config.py +0 -0
  121. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/_slurm_ssh/__init__.py +0 -0
  122. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/_slurm_ssh/_submit_setup.py +0 -0
  123. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/_slurm_sudo/__init__.py +0 -0
  124. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/_slurm_sudo/_submit_setup.py +0 -0
  125. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/deduplicate_list.py +0 -0
  126. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/handle_failed_job.py +0 -0
  127. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/merge_outputs.py +0 -0
  128. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/runner.py +0 -0
  129. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/runner_functions.py +0 -0
  130. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/runner_functions_low_level.py +0 -0
  131. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/task_interface.py +0 -0
  132. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/v2/v1_compat.py +0 -0
  133. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/runner/versions.py +0 -0
  134. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/__init__.py +0 -0
  135. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/_validators.py +0 -0
  136. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v1/__init__.py +0 -0
  137. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v1/applyworkflow.py +0 -0
  138. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v1/dataset.py +0 -0
  139. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v1/dumps.py +0 -0
  140. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v1/manifest.py +0 -0
  141. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v1/project.py +0 -0
  142. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v1/state.py +0 -0
  143. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v1/task.py +0 -0
  144. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v1/task_collection.py +0 -0
  145. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v1/workflow.py +0 -0
  146. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v2/__init__.py +0 -0
  147. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v2/dataset.py +0 -0
  148. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v2/dumps.py +0 -0
  149. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v2/job.py +0 -0
  150. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v2/manifest.py +0 -0
  151. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v2/project.py +0 -0
  152. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v2/status.py +0 -0
  153. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v2/task.py +0 -0
  154. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v2/task_collection.py +0 -0
  155. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v2/workflow.py +0 -0
  156. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/schemas/v2/workflowtask.py +0 -0
  157. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/app/security/__init__.py +0 -0
  158. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/config.py +0 -0
  159. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/data_migrations/2_4_0.py +0 -0
  160. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/data_migrations/README.md +0 -0
  161. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/gunicorn_fractal.py +0 -0
  162. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/images/__init__.py +0 -0
  163. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/images/models.py +0 -0
  164. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/images/tools.py +0 -0
  165. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/logger.py +0 -0
  166. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/main.py +0 -0
  167. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/README +0 -0
  168. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/env.py +0 -0
  169. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/script.py.mako +0 -0
  170. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/versions/091b01f51f88_add_usergroup_and_linkusergroup_table.py +0 -0
  171. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/versions/4c308bcaea2b_add_task_args_schema_and_task_args_.py +0 -0
  172. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/versions/4cedeb448a53_workflowtask_foreign_keys_not_nullables.py +0 -0
  173. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/versions/50a13d6138fd_initial_schema.py +0 -0
  174. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/versions/5bf02391cfef_v2.py +0 -0
  175. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/versions/70e77f1c38b0_add_applyworkflow_first_task_index_and_.py +0 -0
  176. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/versions/71eefd1dd202_add_slurm_accounts.py +0 -0
  177. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/versions/84bf0fffde30_add_dumps_to_applyworkflow.py +0 -0
  178. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/versions/8f79bd162e35_add_docs_info_and_docs_link_to_task_.py +0 -0
  179. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/versions/97f444d47249_add_applyworkflow_project_dump.py +0 -0
  180. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/versions/99ea79d9e5d2_add_dataset_history.py +0 -0
  181. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/versions/9fd26a2b0de4_add_workflow_timestamp_created.py +0 -0
  182. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/versions/a7f4d6137b53_add_workflow_dump_to_applyworkflow.py +0 -0
  183. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/versions/d4fe3708d309_make_applyworkflow_workflow_dump_non_.py +0 -0
  184. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/versions/e75cac726012_make_applyworkflow_start_timestamp_not_.py +0 -0
  185. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/versions/efa89c30e0a4_add_project_timestamp_created.py +0 -0
  186. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/migrations/versions/f384e1c0cf5d_drop_task_default_args_columns.py +0 -0
  187. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/py.typed +0 -0
  188. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/ssh/__init__.py +0 -0
  189. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/ssh/_fabric.py +0 -0
  190. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/string_tools.py +0 -0
  191. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/syringe.py +0 -0
  192. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/__init__.py +0 -0
  193. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/utils.py +0 -0
  194. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v1/_TaskCollectPip.py +0 -0
  195. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v1/__init__.py +0 -0
  196. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v1/background_operations.py +0 -0
  197. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v1/endpoint_operations.py +0 -0
  198. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v1/get_collection_data.py +0 -0
  199. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v1/utils.py +0 -0
  200. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v2/_TaskCollectPip.py +0 -0
  201. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v2/__init__.py +0 -0
  202. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v2/_venv_pip.py +0 -0
  203. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v2/background_operations.py +0 -0
  204. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v2/background_operations_ssh.py +0 -0
  205. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v2/endpoint_operations.py +0 -0
  206. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v2/templates/_1_create_venv.sh +0 -0
  207. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v2/templates/_2_upgrade_pip.sh +0 -0
  208. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v2/templates/_3_pip_install.sh +0 -0
  209. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v2/templates/_4_pip_freeze.sh +0 -0
  210. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v2/templates/_5_pip_show.sh +0 -0
  211. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/tasks/v2/utils.py +0 -0
  212. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/urls.py +0 -0
  213. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/utils.py +0 -0
  214. {fractal_server-2.4.0a1 → fractal_server-2.4.1}/fractal_server/zip_tools.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: fractal-server
3
- Version: 2.4.0a1
3
+ Version: 2.4.1
4
4
  Summary: Server component of the Fractal analytics platform
5
5
  Home-page: https://github.com/fractal-analytics-platform/fractal-server
6
6
  License: BSD-3-Clause
@@ -0,0 +1 @@
1
+ __VERSION__ = "2.4.1"
@@ -5,6 +5,7 @@ from fastapi import APIRouter
5
5
  from fastapi import Depends
6
6
  from fastapi import HTTPException
7
7
  from fastapi import status
8
+ from sqlalchemy.exc import IntegrityError
8
9
  from sqlalchemy.ext.asyncio import AsyncSession
9
10
  from sqlmodel import col
10
11
  from sqlmodel import func
@@ -19,6 +20,9 @@ from ._aux_auth import _get_single_group_with_user_ids
19
20
  from fractal_server.app.models import LinkUserGroup
20
21
  from fractal_server.app.models import UserGroup
21
22
  from fractal_server.app.models import UserOAuth
23
+ from fractal_server.logger import set_logger
24
+
25
+ logger = set_logger(__name__)
22
26
 
23
27
  router_group = APIRouter()
24
28
 
@@ -133,7 +137,20 @@ async def update_single_group(
133
137
  for user_id in group_update.new_user_ids:
134
138
  link = LinkUserGroup(user_id=user_id, group_id=group_id)
135
139
  db.add(link)
136
- await db.commit()
140
+ try:
141
+ await db.commit()
142
+ except IntegrityError as e:
143
+ error_msg = (
144
+ f"Cannot link users with IDs {group_update.new_user_ids} "
145
+ f"to group {group_id}. "
146
+ "Likely reason: one of these links already exists.\n"
147
+ f"Original error: {str(e)}"
148
+ )
149
+ logger.info(error_msg)
150
+ raise HTTPException(
151
+ status_code=status.HTTP_422_UNPROCESSABLE_ENTITY,
152
+ detail=error_msg,
153
+ )
137
154
 
138
155
  updated_group = await _get_single_group_with_user_ids(
139
156
  group_id=group_id, db=db
@@ -8,6 +8,7 @@ from fastapi import status
8
8
  from fastapi_users import exceptions
9
9
  from fastapi_users import schemas
10
10
  from fastapi_users.router.common import ErrorCode
11
+ from sqlalchemy.exc import IntegrityError
11
12
  from sqlalchemy.ext.asyncio import AsyncSession
12
13
  from sqlmodel import col
13
14
  from sqlmodel import func
@@ -25,10 +26,14 @@ from fractal_server.app.models import UserOAuth
25
26
  from fractal_server.app.routes.auth._aux_auth import _user_or_404
26
27
  from fractal_server.app.security import get_user_manager
27
28
  from fractal_server.app.security import UserManager
29
+ from fractal_server.logger import set_logger
28
30
 
29
31
  router_users = APIRouter()
30
32
 
31
33
 
34
+ logger = set_logger(__name__)
35
+
36
+
32
37
  @router_users.get("/users/{user_id}/", response_model=UserRead)
33
38
  async def get_user(
34
39
  user_id: int,
@@ -107,7 +112,21 @@ async def patch_user(
107
112
  for new_group_id in user_update.new_group_ids:
108
113
  link = LinkUserGroup(user_id=user_id, group_id=new_group_id)
109
114
  db.add(link)
110
- await db.commit()
115
+
116
+ try:
117
+ await db.commit()
118
+ except IntegrityError as e:
119
+ error_msg = (
120
+ f"Cannot link groups with IDs {user_update.new_group_ids} "
121
+ f"to user {user_id}. "
122
+ "Likely reason: one of these links already exists.\n"
123
+ f"Original error: {str(e)}"
124
+ )
125
+ logger.info(error_msg)
126
+ raise HTTPException(
127
+ status_code=status.HTTP_422_UNPROCESSABLE_ENTITY,
128
+ detail=error_msg,
129
+ )
111
130
 
112
131
  patched_user = user_to_patch
113
132
 
@@ -132,6 +151,11 @@ async def patch_user(
132
151
  "reason": e.reason,
133
152
  },
134
153
  )
154
+ except exceptions.UserAlreadyExists:
155
+ raise HTTPException(
156
+ status.HTTP_400_BAD_REQUEST,
157
+ detail=ErrorCode.UPDATE_USER_EMAIL_ALREADY_EXISTS,
158
+ )
135
159
  else:
136
160
  # Nothing to do, just continue
137
161
  patched_user = user_to_patch
@@ -106,6 +106,10 @@ class UserUpdateStrict(BaseModel, extra=Extra.forbid):
106
106
  class UserUpdateWithNewGroupIds(UserUpdate):
107
107
  new_group_ids: Optional[list[int]] = None
108
108
 
109
+ _val_unique = validator("new_group_ids", allow_reuse=True)(
110
+ val_unique_list("new_group_ids")
111
+ )
112
+
109
113
 
110
114
  class UserCreate(schemas.BaseUserCreate):
111
115
  """
@@ -4,6 +4,10 @@ from typing import Optional
4
4
  from pydantic import BaseModel
5
5
  from pydantic import Extra
6
6
  from pydantic import Field
7
+ from pydantic import validator
8
+
9
+ from ._validators import val_unique_list
10
+
7
11
 
8
12
  __all__ = (
9
13
  "UserGroupRead",
@@ -55,3 +59,7 @@ class UserGroupUpdate(BaseModel, extra=Extra.forbid):
55
59
  """
56
60
 
57
61
  new_user_ids: list[int] = Field(default_factory=list)
62
+
63
+ _val_unique = validator("new_user_ids", allow_reuse=True)(
64
+ val_unique_list("new_user_ids")
65
+ )
@@ -1,6 +1,6 @@
1
1
  [tool.poetry]
2
2
  name = "fractal-server"
3
- version = "2.4.0a1"
3
+ version = "2.4.1"
4
4
  description = "Server component of the Fractal analytics platform"
5
5
  authors = [
6
6
  "Tommaso Comparin <tommaso.comparin@exact-lab.it>",
@@ -92,7 +92,7 @@ filterwarnings = [
92
92
  ]
93
93
 
94
94
  [tool.bumpver]
95
- current_version = "2.4.0a1"
95
+ current_version = "2.4.1"
96
96
  version_pattern = "MAJOR.MINOR.PATCH[PYTAGNUM]"
97
97
  commit_message = "bump version {old_version} -> {new_version}"
98
98
  commit = true
@@ -1 +0,0 @@
1
- __VERSION__ = "2.4.0a1"
File without changes