fractal-server 2.3.0a0__tar.gz → 2.3.0a1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (199) hide show
  1. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/PKG-INFO +1 -1
  2. fractal_server-2.3.0a1/fractal_server/__init__.py +1 -0
  3. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v2/task_collection.py +2 -2
  4. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v2/background_operations_ssh.py +5 -1
  5. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v2/templates/_2_upgrade_pip.sh +1 -1
  6. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v2/templates/_4_pip_freeze.sh +1 -1
  7. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v2/templates/_5_pip_show.sh +1 -1
  8. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/pyproject.toml +2 -2
  9. fractal_server-2.3.0a0/fractal_server/__init__.py +0 -1
  10. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/LICENSE +0 -0
  11. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/README.md +0 -0
  12. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/__main__.py +0 -0
  13. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/alembic.ini +0 -0
  14. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/__init__.py +0 -0
  15. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/db/__init__.py +0 -0
  16. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/__init__.py +0 -0
  17. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/linkuserproject.py +0 -0
  18. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/security.py +0 -0
  19. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/v1/__init__.py +0 -0
  20. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/v1/dataset.py +0 -0
  21. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/v1/job.py +0 -0
  22. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/v1/project.py +0 -0
  23. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/v1/state.py +0 -0
  24. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/v1/task.py +0 -0
  25. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/v1/workflow.py +0 -0
  26. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/v2/__init__.py +0 -0
  27. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/v2/collection_state.py +0 -0
  28. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/v2/dataset.py +0 -0
  29. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/v2/job.py +0 -0
  30. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/v2/project.py +0 -0
  31. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/v2/task.py +0 -0
  32. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/v2/workflow.py +0 -0
  33. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/models/v2/workflowtask.py +0 -0
  34. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/__init__.py +0 -0
  35. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/admin/__init__.py +0 -0
  36. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/admin/v1.py +0 -0
  37. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/admin/v2.py +0 -0
  38. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/__init__.py +0 -0
  39. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v1/__init__.py +0 -0
  40. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v1/_aux_functions.py +0 -0
  41. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v1/dataset.py +0 -0
  42. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v1/job.py +0 -0
  43. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v1/project.py +0 -0
  44. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v1/task.py +0 -0
  45. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v1/task_collection.py +0 -0
  46. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v1/workflow.py +0 -0
  47. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v1/workflowtask.py +0 -0
  48. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v2/__init__.py +0 -0
  49. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v2/_aux_functions.py +0 -0
  50. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v2/dataset.py +0 -0
  51. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v2/images.py +0 -0
  52. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v2/job.py +0 -0
  53. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v2/project.py +0 -0
  54. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v2/status.py +0 -0
  55. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v2/submit.py +0 -0
  56. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v2/task.py +0 -0
  57. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v2/task_collection.py +0 -0
  58. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v2/task_collection_custom.py +0 -0
  59. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v2/task_collection_ssh.py +0 -0
  60. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v2/task_legacy.py +0 -0
  61. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v2/workflow.py +0 -0
  62. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/api/v2/workflowtask.py +0 -0
  63. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/auth.py +0 -0
  64. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/aux/__init__.py +0 -0
  65. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/aux/_job.py +0 -0
  66. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/routes/aux/_runner.py +0 -0
  67. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/.gitignore +0 -0
  68. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/__init__.py +0 -0
  69. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/async_wrap.py +0 -0
  70. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/components.py +0 -0
  71. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/compress_folder.py +0 -0
  72. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/exceptions.py +0 -0
  73. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/executors/__init__.py +0 -0
  74. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/executors/slurm/__init__.py +0 -0
  75. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/executors/slurm/_batching.py +0 -0
  76. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/executors/slurm/_slurm_config.py +0 -0
  77. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/executors/slurm/remote.py +0 -0
  78. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/executors/slurm/ssh/__init__.py +0 -0
  79. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/executors/slurm/ssh/_executor_wait_thread.py +0 -0
  80. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/executors/slurm/ssh/_slurm_job.py +0 -0
  81. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/executors/slurm/ssh/executor.py +0 -0
  82. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/executors/slurm/sudo/__init__.py +0 -0
  83. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/executors/slurm/sudo/_check_jobs_status.py +0 -0
  84. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/executors/slurm/sudo/_executor_wait_thread.py +0 -0
  85. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/executors/slurm/sudo/_subprocess_run_as_user.py +0 -0
  86. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/executors/slurm/sudo/executor.py +0 -0
  87. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/extract_archive.py +0 -0
  88. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/filenames.py +0 -0
  89. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/set_start_and_last_task_index.py +0 -0
  90. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/shutdown.py +0 -0
  91. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/task_files.py +0 -0
  92. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v1/__init__.py +0 -0
  93. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v1/_common.py +0 -0
  94. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v1/_local/__init__.py +0 -0
  95. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v1/_local/_local_config.py +0 -0
  96. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v1/_local/_submit_setup.py +0 -0
  97. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v1/_local/executor.py +0 -0
  98. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v1/_slurm/__init__.py +0 -0
  99. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v1/_slurm/_submit_setup.py +0 -0
  100. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v1/_slurm/get_slurm_config.py +0 -0
  101. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v1/common.py +0 -0
  102. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v1/handle_failed_job.py +0 -0
  103. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/__init__.py +0 -0
  104. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/_local/__init__.py +0 -0
  105. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/_local/_local_config.py +0 -0
  106. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/_local/_submit_setup.py +0 -0
  107. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/_local/executor.py +0 -0
  108. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/_local_experimental/__init__.py +0 -0
  109. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/_local_experimental/_local_config.py +0 -0
  110. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/_local_experimental/_submit_setup.py +0 -0
  111. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/_local_experimental/executor.py +0 -0
  112. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/_slurm/__init__.py +0 -0
  113. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/_slurm/_submit_setup.py +0 -0
  114. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/_slurm/get_slurm_config.py +0 -0
  115. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/_slurm_ssh/__init__.py +0 -0
  116. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/_slurm_ssh/_submit_setup.py +0 -0
  117. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/_slurm_ssh/get_slurm_config.py +0 -0
  118. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/deduplicate_list.py +0 -0
  119. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/handle_failed_job.py +0 -0
  120. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/merge_outputs.py +0 -0
  121. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/runner.py +0 -0
  122. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/runner_functions.py +0 -0
  123. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/runner_functions_low_level.py +0 -0
  124. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/task_interface.py +0 -0
  125. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/v2/v1_compat.py +0 -0
  126. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/runner/versions.py +0 -0
  127. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/__init__.py +0 -0
  128. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/_validators.py +0 -0
  129. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/user.py +0 -0
  130. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v1/__init__.py +0 -0
  131. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v1/applyworkflow.py +0 -0
  132. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v1/dataset.py +0 -0
  133. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v1/dumps.py +0 -0
  134. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v1/manifest.py +0 -0
  135. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v1/project.py +0 -0
  136. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v1/state.py +0 -0
  137. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v1/task.py +0 -0
  138. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v1/task_collection.py +0 -0
  139. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v1/workflow.py +0 -0
  140. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v2/__init__.py +0 -0
  141. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v2/dataset.py +0 -0
  142. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v2/dumps.py +0 -0
  143. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v2/job.py +0 -0
  144. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v2/manifest.py +0 -0
  145. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v2/project.py +0 -0
  146. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v2/status.py +0 -0
  147. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v2/task.py +0 -0
  148. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v2/workflow.py +0 -0
  149. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v2/workflowtask.py +0 -0
  150. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/security/__init__.py +0 -0
  151. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/config.py +0 -0
  152. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/data_migrations/README.md +0 -0
  153. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/gunicorn_fractal.py +0 -0
  154. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/images/__init__.py +0 -0
  155. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/images/models.py +0 -0
  156. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/images/tools.py +0 -0
  157. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/logger.py +0 -0
  158. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/main.py +0 -0
  159. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/README +0 -0
  160. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/env.py +0 -0
  161. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/script.py.mako +0 -0
  162. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/versions/4c308bcaea2b_add_task_args_schema_and_task_args_.py +0 -0
  163. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/versions/4cedeb448a53_workflowtask_foreign_keys_not_nullables.py +0 -0
  164. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/versions/50a13d6138fd_initial_schema.py +0 -0
  165. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/versions/5bf02391cfef_v2.py +0 -0
  166. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/versions/70e77f1c38b0_add_applyworkflow_first_task_index_and_.py +0 -0
  167. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/versions/71eefd1dd202_add_slurm_accounts.py +0 -0
  168. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/versions/84bf0fffde30_add_dumps_to_applyworkflow.py +0 -0
  169. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/versions/8f79bd162e35_add_docs_info_and_docs_link_to_task_.py +0 -0
  170. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/versions/97f444d47249_add_applyworkflow_project_dump.py +0 -0
  171. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/versions/99ea79d9e5d2_add_dataset_history.py +0 -0
  172. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/versions/9fd26a2b0de4_add_workflow_timestamp_created.py +0 -0
  173. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/versions/a7f4d6137b53_add_workflow_dump_to_applyworkflow.py +0 -0
  174. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/versions/d4fe3708d309_make_applyworkflow_workflow_dump_non_.py +0 -0
  175. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/versions/e75cac726012_make_applyworkflow_start_timestamp_not_.py +0 -0
  176. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/versions/efa89c30e0a4_add_project_timestamp_created.py +0 -0
  177. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/migrations/versions/f384e1c0cf5d_drop_task_default_args_columns.py +0 -0
  178. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/py.typed +0 -0
  179. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/ssh/__init__.py +0 -0
  180. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/ssh/_fabric.py +0 -0
  181. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/syringe.py +0 -0
  182. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/__init__.py +0 -0
  183. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/utils.py +0 -0
  184. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v1/_TaskCollectPip.py +0 -0
  185. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v1/__init__.py +0 -0
  186. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v1/background_operations.py +0 -0
  187. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v1/endpoint_operations.py +0 -0
  188. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v1/get_collection_data.py +0 -0
  189. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v1/utils.py +0 -0
  190. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v2/_TaskCollectPip.py +0 -0
  191. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v2/__init__.py +0 -0
  192. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v2/_venv_pip.py +0 -0
  193. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v2/background_operations.py +0 -0
  194. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v2/endpoint_operations.py +0 -0
  195. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v2/templates/_1_create_venv.sh +0 -0
  196. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v2/templates/_3_pip_install.sh +0 -0
  197. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v2/utils.py +0 -0
  198. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/urls.py +0 -0
  199. {fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/utils.py +0 -0
{fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: fractal-server
3
- Version: 2.3.0a0
3
+ Version: 2.3.0a1
4
4
  Summary: Server component of the Fractal analytics platform
5
5
  Home-page: https://github.com/fractal-analytics-platform/fractal-server
6
6
  License: BSD-3-Clause
fractal_server-2.3.0a1/fractal_server/__init__.py ADDED
@@ -0,0 +1 @@
1
+ __VERSION__ = "2.3.0a1"
{fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/app/schemas/v2/task_collection.py RENAMED
@@ -116,8 +116,8 @@ class TaskCollectCustomV2(BaseModel):
116
116
 
117
117
  @root_validator(pre=True)
118
118
  def one_of_package_root_or_name(cls, values):
119
- package_root = values["package_root"]
120
- package_name = values["package_name"]
119
+ package_root = values.get("package_root")
120
+ package_name = values.get("package_name")
121
121
  if (package_root is None and package_name is None) or (
122
122
  package_root is not None and package_name is not None
123
123
  ):
{fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v2/background_operations_ssh.py RENAMED
@@ -112,7 +112,7 @@ def _customize_and_run_template(
112
112
  return stdout
113
113
 
114
114
 
115
- async def background_collect_pip_ssh(
115
+ def background_collect_pip_ssh(
116
116
  state_id: int,
117
117
  task_pkg: _TaskCollectPip,
118
118
  connection: Connection,
@@ -122,6 +122,10 @@ async def background_collect_pip_ssh(
122
122
 
123
123
  This function is run as a background task, therefore exceptions must be
124
124
  handled.
125
+
126
+ NOTE: by making this function sync, it will run within a thread - due to
127
+ starlette/fastapi handling of background tasks (see
128
+ https://github.com/encode/starlette/blob/master/starlette/background.py).
125
129
  """
126
130
  # Work within a temporary folder, where also logs will be placed
127
131
  with TemporaryDirectory() as tmpdir:
{fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v2/templates/_2_upgrade_pip.sh RENAMED
@@ -10,7 +10,7 @@ PACKAGE_ENV_DIR=__PACKAGE_ENV_DIR__
10
10
  PACKAGE_NAME=__PACKAGE_NAME__
11
11
  PACKAGE=__PACKAGE__
12
12
  PYTHON=__PYTHON__
13
- INSTALL_STRING=__INSTAL_STRING__
13
+ INSTALL_STRING=__INSTALL_STRING__
14
14
 
15
15
  TIME_START=$(date +%s)
16
16
 
{fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v2/templates/_4_pip_freeze.sh RENAMED
@@ -12,7 +12,7 @@ PACKAGE_ENV_DIR=__PACKAGE_ENV_DIR__
12
12
  PACKAGE_NAME=__PACKAGE_NAME__
13
13
  PACKAGE=__PACKAGE__
14
14
  PYTHON=__PYTHON__
15
- INSTALL_STRING=__INSTAL_STRING__
15
+ INSTALL_STRING=__INSTALL_STRING__
16
16
 
17
17
 
18
18
 
{fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/fractal_server/tasks/v2/templates/_5_pip_show.sh RENAMED
@@ -11,7 +11,7 @@ PACKAGE_ENV_DIR=__PACKAGE_ENV_DIR__
11
11
  PACKAGE_NAME=__PACKAGE_NAME__
12
12
  PACKAGE=__PACKAGE__
13
13
  PYTHON=__PYTHON__
14
- INSTALL_STRING=__INSTAL_STRING__
14
+ INSTALL_STRING=__INSTALL_STRING__
15
15
 
16
16
 
17
17
  TIME_START=$(date +%s)
{fractal_server-2.3.0a0 → fractal_server-2.3.0a1}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
1
1
  [tool.poetry]
2
2
  name = "fractal-server"
3
- version = "2.3.0a0"
3
+ version = "2.3.0a1"
4
4
  description = "Server component of the Fractal analytics platform"
5
5
  authors = [
6
6
  "Tommaso Comparin <tommaso.comparin@exact-lab.it>",
@@ -91,7 +91,7 @@ filterwarnings = [
91
91
  ]
92
92
 
93
93
  [tool.bumpver]
94
- current_version = "2.3.0a0"
94
+ current_version = "2.3.0a1"
95
95
  version_pattern = "MAJOR.MINOR.PATCH[PYTAGNUM]"
96
96
  commit_message = "bump version {old_version} -> {new_version}"
97
97
  commit = true
fractal_server-2.3.0a0/fractal_server/__init__.py DELETED
@@ -1 +0,0 @@
1
- __VERSION__ = "2.3.0a0"