fractal-server 2.14.9__tar.gz → 2.14.11__tar.gz

{fractal_server-2.14.9 → fractal_server-2.14.11}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: fractal-server
-Version: 2.14.9
+Version: 2.14.11
 Summary: Backend component of the Fractal analytics platform
 License: BSD-3-Clause
 Author: Tommaso Comparin

fractal_server-2.14.11/fractal_server/__init__.py

@@ -0,0 +1 @@
+__VERSION__ = "2.14.11"

fractal_server-2.14.9/fractal_server/data_migrations/2_14_9.py → fractal_server-2.14.11/fractal_server/data_migrations/2_14_10.py

@@ -21,7 +21,8 @@ def fix_db():
 
         for hr in history_runs:
             logger.info(f"HistoryRun[{hr.id}] START")
-
+            if hr.workflowtask_id is None:
+                continue
             wft = db.get(WorkflowTaskV2, hr.workflowtask_id)
             if wft is None:
                 logger.warning(

{fractal_server-2.14.9 → fractal_server-2.14.11}/fractal_server/tasks/v2/templates/2_pip_install.sh

@@ -24,31 +24,11 @@ write_log "END   upgrade pip and install setuptools"
 echo
 
 # Install package
-write_log "START install ${INSTALL_STRING}"
-"$VENVPYTHON" -m pip install ${FRACTAL_PIP_CACHE_DIR_ARG} "$INSTALL_STRING"
-write_log "END   install ${INSTALL_STRING}"
+write_log "START install with INSTALL_STRING=${INSTALL_STRING} and PINNED_PACKAGE_LIST=${PINNED_PACKAGE_LIST}"
+"$VENVPYTHON" -m pip install ${FRACTAL_PIP_CACHE_DIR_ARG} "$INSTALL_STRING" $PINNED_PACKAGE_LIST
+write_log "END   install with INSTALL_STRING=${INSTALL_STRING} and PINNED_PACKAGE_LIST=${PINNED_PACKAGE_LIST}"
 echo
 
-
-# Optionally install pinned versions
-if [ "$PINNED_PACKAGE_LIST" != "" ]; then
-    write_log "START installing pinned versions $PINNED_PACKAGE_LIST"
-    for PINNED_PKG_VERSION in $PINNED_PACKAGE_LIST; do
-
-        PKGNAME=$(echo "$PINNED_PKG_VERSION" | cut -d '=' -f 1)
-        write_log "INFO: package name $PKGNAME"
-        "$VENVPYTHON" -m pip show "$PKGNAME"
-
-    done
-
-    write_log "All packages in ${PINNED_PACKAGE_LIST} are already installed, proceed with specific versions."
-    "$VENVPYTHON" -m pip install ${FRACTAL_PIP_CACHE_DIR_ARG} "$PINNED_PACKAGE_LIST"
-    write_log "END installing pinned versions $PINNED_PACKAGE_LIST"
-else
-    write_log "SKIP installing pinned versions $PINNED_PACKAGE_LIST (empty list)"
-fi
-
-
 # End
 TIME_END=$(date +%s)
 write_log "All good up to here."

{fractal_server-2.14.9 → fractal_server-2.14.11}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "fractal-server"
-version = "2.14.9"
+version = "2.14.11"
 description = "Backend component of the Fractal analytics platform"
 authors = [
     { name="Tommaso Comparin", email="tommaso.comparin@exact-lab.it" },
@@ -94,7 +94,7 @@ filterwarnings = [
 markers = ["container", "ssh"]
 
 [tool.bumpver]
-current_version = "2.14.9"
+current_version = "2.14.11"
 version_pattern = "MAJOR.MINOR.PATCH[PYTAGNUM]"
 commit_message = "bump version {old_version} -> {new_version}"
 commit = true
@@ -118,6 +118,6 @@ omit = ["tests/*", "benchmarks/*", "fractal_server/json_schemas/*", "*/.venv/*"]
 [tool.coverage.report]
 omit = ["tests/*", "benchmarks/*", "fractal_server/json_schemas/*", "*/.venv/*"]
 
-[tool.mypy.overrides]
-module = ["devtools", "uvicorn", "pytest", "asgi_lifespan", "asyncpg"]
+[[tool.mypy.overrides]]
+module = ["devtools", "uvicorn", "pytest", "asgi_lifespan", "asyncpg", "sqlmodel", "pydantic", "sqlalchemy", "sqlalchemy.types", "pydantic.types", "dotenv", "pydantic_settings", "sqlalchemy.engine", "sqlalchemy.ext.asyncio", "sqlalchemy.orm", "sqlalchemy.dialects.postgresql", "sqlalchemy.ext.orderinglist", "fastapi_users"]
 ignore_missing_imports = true

fractal_server-2.14.9/fractal_server/__init__.py

@@ -1 +0,0 @@
-__VERSION__ = "2.14.9"