fractal-server 2.13.0__tar.gz → 2.13.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (207) hide show
  1. {fractal_server-2.13.0 → fractal_server-2.13.1}/PKG-INFO +1 -1
  2. fractal_server-2.13.1/fractal_server/__init__.py +1 -0
  3. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/models/v2/__init__.py +4 -0
  4. fractal_server-2.13.1/fractal_server/app/models/v2/accounting.py +35 -0
  5. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/admin/v2/__init__.py +4 -0
  6. fractal_server-2.13.1/fractal_server/app/routes/admin/v2/accounting.py +108 -0
  7. fractal_server-2.13.1/fractal_server/app/routes/admin/v2/impersonate.py +35 -0
  8. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/admin/v2/job.py +5 -13
  9. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/admin/v2/task_group.py +4 -12
  10. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/_aux_functions_task_lifecycle.py +3 -3
  11. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/submit.py +1 -0
  12. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/task_group.py +2 -5
  13. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/v2/__init__.py +4 -0
  14. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/v2/_local/__init__.py +3 -0
  15. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/v2/_slurm_ssh/__init__.py +2 -0
  16. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/v2/_slurm_sudo/__init__.py +2 -0
  17. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/v2/runner.py +16 -6
  18. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/v2/runner_functions.py +12 -11
  19. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/v2/__init__.py +1 -0
  20. fractal_server-2.13.1/fractal_server/app/schemas/v2/accounting.py +18 -0
  21. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/config.py +56 -50
  22. fractal_server-2.13.1/fractal_server/migrations/versions/af1ef1c83c9b_add_accounting_tables.py +57 -0
  23. fractal_server-2.13.1/fractal_server/tasks/v2/__init__.py +0 -0
  24. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/utils_background.py +1 -1
  25. {fractal_server-2.13.0 → fractal_server-2.13.1}/pyproject.toml +3 -3
  26. fractal_server-2.13.0/fractal_server/__init__.py +0 -1
  27. fractal_server-2.13.0/fractal_server/app/routes/aux/__init__.py +0 -20
  28. {fractal_server-2.13.0 → fractal_server-2.13.1}/LICENSE +0 -0
  29. {fractal_server-2.13.0 → fractal_server-2.13.1}/README.md +0 -0
  30. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/__main__.py +0 -0
  31. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/alembic.ini +0 -0
  32. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/__init__.py +0 -0
  33. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/db/__init__.py +0 -0
  34. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/models/__init__.py +0 -0
  35. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/models/linkusergroup.py +0 -0
  36. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/models/linkuserproject.py +0 -0
  37. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/models/security.py +0 -0
  38. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/models/user_settings.py +0 -0
  39. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/models/v2/dataset.py +0 -0
  40. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/models/v2/job.py +0 -0
  41. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/models/v2/project.py +0 -0
  42. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/models/v2/task.py +0 -0
  43. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/models/v2/task_group.py +0 -0
  44. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/models/v2/workflow.py +0 -0
  45. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/models/v2/workflowtask.py +0 -0
  46. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/__init__.py +0 -0
  47. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/admin/__init__.py +0 -0
  48. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/admin/v2/project.py +0 -0
  49. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/admin/v2/task.py +0 -0
  50. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/admin/v2/task_group_lifecycle.py +0 -0
  51. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/__init__.py +0 -0
  52. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/__init__.py +0 -0
  53. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/_aux_functions.py +0 -0
  54. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/_aux_functions_tasks.py +0 -0
  55. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/dataset.py +0 -0
  56. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/images.py +0 -0
  57. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/job.py +0 -0
  58. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/project.py +0 -0
  59. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/status.py +0 -0
  60. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/task.py +0 -0
  61. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/task_collection.py +0 -0
  62. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/task_collection_custom.py +0 -0
  63. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/task_group_lifecycle.py +0 -0
  64. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/workflow.py +0 -0
  65. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/workflow_import.py +0 -0
  66. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/api/v2/workflowtask.py +0 -0
  67. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/auth/__init__.py +0 -0
  68. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/auth/_aux_auth.py +0 -0
  69. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/auth/current_user.py +0 -0
  70. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/auth/group.py +0 -0
  71. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/auth/login.py +0 -0
  72. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/auth/oauth.py +0 -0
  73. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/auth/register.py +0 -0
  74. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/auth/router.py +0 -0
  75. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/auth/users.py +0 -0
  76. {fractal_server-2.13.0/fractal_server/app/runner → fractal_server-2.13.1/fractal_server/app/routes/aux}/__init__.py +0 -0
  77. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/aux/_job.py +0 -0
  78. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/aux/_runner.py +0 -0
  79. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/routes/aux/validate_user_settings.py +0 -0
  80. {fractal_server-2.13.0/fractal_server/app/runner/executors → fractal_server-2.13.1/fractal_server/app/runner}/__init__.py +0 -0
  81. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/components.py +0 -0
  82. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/compress_folder.py +0 -0
  83. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/exceptions.py +0 -0
  84. {fractal_server-2.13.0/fractal_server/app/runner/executors/slurm → fractal_server-2.13.1/fractal_server/app/runner/executors}/__init__.py +0 -0
  85. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/executors/_job_states.py +0 -0
  86. {fractal_server-2.13.0/fractal_server/app/runner/executors/slurm/ssh → fractal_server-2.13.1/fractal_server/app/runner/executors/slurm}/__init__.py +0 -0
  87. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/executors/slurm/_batching.py +0 -0
  88. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/executors/slurm/_slurm_config.py +0 -0
  89. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/executors/slurm/remote.py +0 -0
  90. {fractal_server-2.13.0/fractal_server/app/runner/executors/slurm/sudo → fractal_server-2.13.1/fractal_server/app/runner/executors/slurm/ssh}/__init__.py +0 -0
  91. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/executors/slurm/ssh/_executor_wait_thread.py +0 -0
  92. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/executors/slurm/ssh/_slurm_job.py +0 -0
  93. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/executors/slurm/ssh/executor.py +0 -0
  94. {fractal_server-2.13.0/fractal_server/app/runner/v2/_slurm_common → fractal_server-2.13.1/fractal_server/app/runner/executors/slurm/sudo}/__init__.py +0 -0
  95. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/executors/slurm/sudo/_check_jobs_status.py +0 -0
  96. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/executors/slurm/sudo/_executor_wait_thread.py +0 -0
  97. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/executors/slurm/sudo/_subprocess_run_as_user.py +0 -0
  98. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/executors/slurm/sudo/executor.py +0 -0
  99. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/executors/slurm/utils_executors.py +0 -0
  100. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/extract_archive.py +0 -0
  101. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/filenames.py +0 -0
  102. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/run_subprocess.py +0 -0
  103. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/set_start_and_last_task_index.py +0 -0
  104. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/shutdown.py +0 -0
  105. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/task_files.py +0 -0
  106. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/v2/_local/_local_config.py +0 -0
  107. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/v2/_local/_submit_setup.py +0 -0
  108. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/v2/_local/executor.py +0 -0
  109. {fractal_server-2.13.0/fractal_server/tasks/v2 → fractal_server-2.13.1/fractal_server/app/runner/v2/_slurm_common}/__init__.py +0 -0
  110. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/v2/_slurm_common/get_slurm_config.py +0 -0
  111. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/v2/_slurm_ssh/_submit_setup.py +0 -0
  112. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/v2/_slurm_sudo/_submit_setup.py +0 -0
  113. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/v2/deduplicate_list.py +0 -0
  114. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/v2/handle_failed_job.py +0 -0
  115. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/v2/merge_outputs.py +0 -0
  116. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/v2/runner_functions_low_level.py +0 -0
  117. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/v2/task_interface.py +0 -0
  118. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/runner/versions.py +0 -0
  119. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/__init__.py +0 -0
  120. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/_filter_validators.py +0 -0
  121. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/_validators.py +0 -0
  122. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/user.py +0 -0
  123. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/user_group.py +0 -0
  124. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/user_settings.py +0 -0
  125. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/v2/dataset.py +0 -0
  126. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/v2/dumps.py +0 -0
  127. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/v2/job.py +0 -0
  128. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/v2/manifest.py +0 -0
  129. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/v2/project.py +0 -0
  130. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/v2/status.py +0 -0
  131. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/v2/task.py +0 -0
  132. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/v2/task_collection.py +0 -0
  133. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/v2/task_group.py +0 -0
  134. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/v2/workflow.py +0 -0
  135. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/schemas/v2/workflowtask.py +0 -0
  136. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/security/__init__.py +0 -0
  137. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/security/signup_email.py +0 -0
  138. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/app/user_settings.py +0 -0
  139. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/data_migrations/README.md +0 -0
  140. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/data_migrations/tools.py +0 -0
  141. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/gunicorn_fractal.py +0 -0
  142. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/images/__init__.py +0 -0
  143. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/images/models.py +0 -0
  144. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/images/tools.py +0 -0
  145. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/logger.py +0 -0
  146. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/main.py +0 -0
  147. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/env.py +0 -0
  148. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/naming_convention.py +0 -0
  149. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/034a469ec2eb_task_groups.py +0 -0
  150. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/091b01f51f88_add_usergroup_and_linkusergroup_table.py +0 -0
  151. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/19eca0dd47a9_user_settings_project_dir.py +0 -0
  152. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/1eac13a26c83_drop_v1_tables.py +0 -0
  153. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/316140ff7ee1_remove_usersettings_cache_dir.py +0 -0
  154. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/4c308bcaea2b_add_task_args_schema_and_task_args_.py +0 -0
  155. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/4cedeb448a53_workflowtask_foreign_keys_not_nullables.py +0 -0
  156. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/501961cfcd85_remove_link_between_v1_and_v2_tasks_.py +0 -0
  157. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/50a13d6138fd_initial_schema.py +0 -0
  158. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/5bf02391cfef_v2.py +0 -0
  159. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/70e77f1c38b0_add_applyworkflow_first_task_index_and_.py +0 -0
  160. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/71eefd1dd202_add_slurm_accounts.py +0 -0
  161. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/84bf0fffde30_add_dumps_to_applyworkflow.py +0 -0
  162. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/8e8f227a3e36_update_taskv2_post_2_7_0.py +0 -0
  163. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/8f79bd162e35_add_docs_info_and_docs_link_to_task_.py +0 -0
  164. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/94a47ea2d3ff_remove_cache_dir_slurm_user_and_slurm_.py +0 -0
  165. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/97f444d47249_add_applyworkflow_project_dump.py +0 -0
  166. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/99ea79d9e5d2_add_dataset_history.py +0 -0
  167. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/9c5ae74c9b98_add_user_settings_table.py +0 -0
  168. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/9fd26a2b0de4_add_workflow_timestamp_created.py +0 -0
  169. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/a7f4d6137b53_add_workflow_dump_to_applyworkflow.py +0 -0
  170. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/af8673379a5c_drop_old_filter_columns.py +0 -0
  171. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/d256a7379ab8_taskgroup_activity_and_venv_info_to_.py +0 -0
  172. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/d4fe3708d309_make_applyworkflow_workflow_dump_non_.py +0 -0
  173. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/da2cb2ac4255_user_group_viewer_paths.py +0 -0
  174. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/db09233ad13a_split_filters_and_keep_old_columns.py +0 -0
  175. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/e75cac726012_make_applyworkflow_start_timestamp_not_.py +0 -0
  176. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/efa89c30e0a4_add_project_timestamp_created.py +0 -0
  177. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/migrations/versions/f384e1c0cf5d_drop_task_default_args_columns.py +0 -0
  178. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/py.typed +0 -0
  179. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/ssh/__init__.py +0 -0
  180. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/ssh/_fabric.py +0 -0
  181. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/string_tools.py +0 -0
  182. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/syringe.py +0 -0
  183. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/__init__.py +0 -0
  184. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/utils.py +0 -0
  185. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/local/__init__.py +0 -0
  186. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/local/_utils.py +0 -0
  187. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/local/collect.py +0 -0
  188. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/local/deactivate.py +0 -0
  189. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/local/reactivate.py +0 -0
  190. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/ssh/__init__.py +0 -0
  191. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/ssh/_utils.py +0 -0
  192. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/ssh/collect.py +0 -0
  193. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/ssh/deactivate.py +0 -0
  194. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/ssh/reactivate.py +0 -0
  195. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/templates/1_create_venv.sh +0 -0
  196. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/templates/2_pip_install.sh +0 -0
  197. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/templates/3_pip_freeze.sh +0 -0
  198. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/templates/4_pip_show.sh +0 -0
  199. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/templates/5_get_venv_size_and_file_number.sh +0 -0
  200. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/templates/6_pip_install_from_freeze.sh +0 -0
  201. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/utils_database.py +0 -0
  202. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/utils_package_names.py +0 -0
  203. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/utils_python_interpreter.py +0 -0
  204. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/tasks/v2/utils_templates.py +0 -0
  205. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/urls.py +0 -0
  206. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/utils.py +0 -0
  207. {fractal_server-2.13.0 → fractal_server-2.13.1}/fractal_server/zip_tools.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.3
2
2
  Name: fractal-server
3
- Version: 2.13.0
3
+ Version: 2.13.1
4
4
  Summary: Backend component of the Fractal analytics platform
5
5
  Home-page: https://github.com/fractal-analytics-platform/fractal-server
6
6
  License: BSD-3-Clause
@@ -0,0 +1 @@
1
+ __VERSION__ = "2.13.1"
@@ -2,6 +2,8 @@
2
2
  v2 `models` module
3
3
  """
4
4
  from ..linkuserproject import LinkUserProjectV2
5
+ from .accounting import AccountingRecord
6
+ from .accounting import AccountingRecordSlurm
5
7
  from .dataset import DatasetV2
6
8
  from .job import JobV2
7
9
  from .project import ProjectV2
@@ -12,6 +14,8 @@ from .workflow import WorkflowV2
12
14
  from .workflowtask import WorkflowTaskV2
13
15
 
14
16
  __all__ = [
17
+ "AccountingRecord",
18
+ "AccountingRecordSlurm",
15
19
  "LinkUserProjectV2",
16
20
  "DatasetV2",
17
21
  "JobV2",
@@ -0,0 +1,35 @@
1
+ from datetime import datetime
2
+ from typing import Optional
3
+
4
+ from sqlalchemy import Column
5
+ from sqlalchemy import Integer
6
+ from sqlalchemy.dialects.postgresql import ARRAY
7
+ from sqlalchemy.types import DateTime
8
+ from sqlmodel import Field
9
+ from sqlmodel import SQLModel
10
+
11
+ from ....utils import get_timestamp
12
+
13
+
14
+ class AccountingRecord(SQLModel, table=True):
15
+ id: Optional[int] = Field(default=None, primary_key=True)
16
+ user_id: int = Field(foreign_key="user_oauth.id", nullable=False)
17
+ timestamp: datetime = Field(
18
+ default_factory=get_timestamp,
19
+ sa_column=Column(DateTime(timezone=True), nullable=False),
20
+ )
21
+ num_tasks: int
22
+ num_new_images: int
23
+
24
+
25
+ class AccountingRecordSlurm(SQLModel, table=True):
26
+ id: Optional[int] = Field(default=None, primary_key=True)
27
+ user_id: int = Field(foreign_key="user_oauth.id", nullable=False)
28
+ timestamp: datetime = Field(
29
+ default_factory=get_timestamp,
30
+ sa_column=Column(DateTime(timezone=True), nullable=False),
31
+ )
32
+ slurm_job_ids: list[int] = Field(
33
+ default_factory=list,
34
+ sa_column=Column(ARRAY(Integer)),
35
+ )
@@ -3,6 +3,8 @@
3
3
  """
4
4
  from fastapi import APIRouter
5
5
 
6
+ from .accounting import router as accounting_router
7
+ from .impersonate import router as impersonate_router
6
8
  from .job import router as job_router
7
9
  from .project import router as project_router
8
10
  from .task import router as task_router
@@ -11,6 +13,7 @@ from .task_group_lifecycle import router as task_group_lifecycle_router
11
13
 
12
14
  router_admin_v2 = APIRouter()
13
15
 
16
+ router_admin_v2.include_router(accounting_router, prefix="/accounting")
14
17
  router_admin_v2.include_router(job_router, prefix="/job")
15
18
  router_admin_v2.include_router(project_router, prefix="/project")
16
19
  router_admin_v2.include_router(task_router, prefix="/task")
@@ -18,3 +21,4 @@ router_admin_v2.include_router(task_group_router, prefix="/task-group")
18
21
  router_admin_v2.include_router(
19
22
  task_group_lifecycle_router, prefix="/task-group"
20
23
  )
24
+ router_admin_v2.include_router(impersonate_router, prefix="/impersonate")
@@ -0,0 +1,108 @@
1
+ from itertools import chain
2
+ from typing import Optional
3
+
4
+ from fastapi import APIRouter
5
+ from fastapi import Depends
6
+ from fastapi import HTTPException
7
+ from fastapi import Query
8
+ from fastapi import status
9
+ from fastapi.responses import JSONResponse
10
+ from pydantic import BaseModel
11
+ from pydantic.types import AwareDatetime
12
+ from sqlmodel import func
13
+ from sqlmodel import select
14
+
15
+ from fractal_server.app.db import AsyncSession
16
+ from fractal_server.app.db import get_async_db
17
+ from fractal_server.app.models import UserOAuth
18
+ from fractal_server.app.models.v2 import AccountingRecord
19
+ from fractal_server.app.models.v2 import AccountingRecordSlurm
20
+ from fractal_server.app.routes.auth import current_active_superuser
21
+ from fractal_server.app.schemas.v2 import AccountingRecordRead
22
+
23
+
24
+ class AccountingQuery(BaseModel):
25
+ user_id: Optional[int] = None
26
+ timestamp_min: Optional[AwareDatetime] = None
27
+ timestamp_max: Optional[AwareDatetime] = None
28
+
29
+
30
+ class AccountingPage(BaseModel):
31
+ total_count: int
32
+ page_size: int
33
+ current_page: int
34
+ records: list[AccountingRecordRead]
35
+
36
+
37
+ router = APIRouter()
38
+
39
+
40
+ @router.post("/", response_model=AccountingPage)
41
+ async def query_accounting(
42
+ query: AccountingQuery,
43
+ # pagination
44
+ page: int = Query(default=1, ge=1),
45
+ page_size: Optional[int] = Query(default=None, ge=1),
46
+ # dependencies
47
+ superuser: UserOAuth = Depends(current_active_superuser),
48
+ db: AsyncSession = Depends(get_async_db),
49
+ ) -> AccountingPage:
50
+
51
+ if page_size is None and page > 1:
52
+ raise HTTPException(
53
+ status_code=status.HTTP_422_UNPROCESSABLE_ENTITY,
54
+ detail=(f"Invalid pagination parameters: {page=}, {page_size=}."),
55
+ )
56
+
57
+ stm = select(AccountingRecord).order_by(AccountingRecord.id)
58
+ stm_count = select(func.count(AccountingRecord.id))
59
+ if query.user_id is not None:
60
+ stm = stm.where(AccountingRecord.user_id == query.user_id)
61
+ stm_count = stm_count.where(AccountingRecord.user_id == query.user_id)
62
+ if query.timestamp_min is not None:
63
+ stm = stm.where(AccountingRecord.timestamp >= query.timestamp_min)
64
+ stm_count = stm_count.where(
65
+ AccountingRecord.timestamp >= query.timestamp_min
66
+ )
67
+ if query.timestamp_max is not None:
68
+ stm = stm.where(AccountingRecord.timestamp <= query.timestamp_max)
69
+ stm_count = stm_count.where(
70
+ AccountingRecord.timestamp <= query.timestamp_max
71
+ )
72
+ if page_size is not None:
73
+ stm = stm.offset((page - 1) * page_size).limit(page_size)
74
+
75
+ res = await db.execute(stm)
76
+ records = res.scalars().all()
77
+ res_total_count = await db.execute(stm_count)
78
+ total_count = res_total_count.scalar()
79
+
80
+ actual_page_size = page_size or len(records)
81
+ return AccountingPage(
82
+ total_count=total_count,
83
+ page_size=actual_page_size,
84
+ current_page=page,
85
+ records=[record.model_dump() for record in records],
86
+ )
87
+
88
+
89
+ @router.post("/slurm/")
90
+ async def query_accounting_slurm(
91
+ query: AccountingQuery,
92
+ # dependencies
93
+ superuser: UserOAuth = Depends(current_active_superuser),
94
+ db: AsyncSession = Depends(get_async_db),
95
+ ) -> JSONResponse:
96
+
97
+ stm = select(AccountingRecordSlurm.slurm_job_ids)
98
+ if query.user_id is not None:
99
+ stm = stm.where(AccountingRecordSlurm.user_id == query.user_id)
100
+ if query.timestamp_min is not None:
101
+ stm = stm.where(AccountingRecordSlurm.timestamp >= query.timestamp_min)
102
+ if query.timestamp_max is not None:
103
+ stm = stm.where(AccountingRecordSlurm.timestamp <= query.timestamp_max)
104
+
105
+ res = await db.execute(stm)
106
+ nested_slurm_job_ids = res.scalars().all()
107
+ aggregated_slurm_job_ids = list(chain(*nested_slurm_job_ids))
108
+ return JSONResponse(content=aggregated_slurm_job_ids, status_code=200)
@@ -0,0 +1,35 @@
1
+ from fastapi import APIRouter
2
+ from fastapi import Depends
3
+ from fastapi.responses import JSONResponse
4
+ from fastapi_users.authentication import JWTStrategy
5
+
6
+ from fractal_server.app.db import AsyncSession
7
+ from fractal_server.app.db import get_async_db
8
+ from fractal_server.app.models import UserOAuth
9
+ from fractal_server.app.routes.auth import current_active_superuser
10
+ from fractal_server.app.routes.auth._aux_auth import _user_or_404
11
+ from fractal_server.config import get_settings
12
+ from fractal_server.syringe import Inject
13
+
14
+ router = APIRouter()
15
+
16
+
17
+ @router.get("/{user_id}/")
18
+ async def impersonate_user(
19
+ user_id: int,
20
+ superuser: UserOAuth = Depends(current_active_superuser),
21
+ db: AsyncSession = Depends(get_async_db),
22
+ ) -> JSONResponse:
23
+ user = await _user_or_404(user_id, db)
24
+
25
+ settings = Inject(get_settings)
26
+ jwt_strategy = JWTStrategy(
27
+ secret=settings.JWT_SECRET_KEY, # type: ignore
28
+ lifetime_seconds=7200, # 2 hours
29
+ )
30
+ token = await jwt_strategy.write_token(user)
31
+
32
+ return JSONResponse(
33
+ content={"access_token": token, "token_type": "bearer"},
34
+ status_code=200,
35
+ )
@@ -1,4 +1,3 @@
1
- from datetime import datetime
2
1
  from pathlib import Path
3
2
  from typing import Optional
4
3
 
@@ -8,6 +7,7 @@ from fastapi import HTTPException
8
7
  from fastapi import Response
9
8
  from fastapi import status
10
9
  from fastapi.responses import StreamingResponse
10
+ from pydantic.types import AwareDatetime
11
11
  from sqlmodel import select
12
12
 
13
13
  from fractal_server.app.db import AsyncSession
@@ -16,7 +16,6 @@ from fractal_server.app.models import UserOAuth
16
16
  from fractal_server.app.models.v2 import JobV2
17
17
  from fractal_server.app.models.v2 import ProjectV2
18
18
  from fractal_server.app.routes.auth import current_active_superuser
19
- from fractal_server.app.routes.aux import _raise_if_naive_datetime
20
19
  from fractal_server.app.routes.aux._job import _write_shutdown_file
21
20
  from fractal_server.app.routes.aux._runner import _check_shutdown_is_supported
22
21
  from fractal_server.app.runner.filenames import WORKFLOW_LOG_FILENAME
@@ -37,10 +36,10 @@ async def view_job(
37
36
  dataset_id: Optional[int] = None,
38
37
  workflow_id: Optional[int] = None,
39
38
  status: Optional[JobStatusTypeV2] = None,
40
- start_timestamp_min: Optional[datetime] = None,
41
- start_timestamp_max: Optional[datetime] = None,
42
- end_timestamp_min: Optional[datetime] = None,
43
- end_timestamp_max: Optional[datetime] = None,
39
+ start_timestamp_min: Optional[AwareDatetime] = None,
40
+ start_timestamp_max: Optional[AwareDatetime] = None,
41
+ end_timestamp_min: Optional[AwareDatetime] = None,
42
+ end_timestamp_max: Optional[AwareDatetime] = None,
44
43
  log: bool = True,
45
44
  user: UserOAuth = Depends(current_active_superuser),
46
45
  db: AsyncSession = Depends(get_async_db),
@@ -67,13 +66,6 @@ async def view_job(
67
66
  `job.log` is set to `None`.
68
67
  """
69
68
 
70
- _raise_if_naive_datetime(
71
- start_timestamp_min,
72
- start_timestamp_max,
73
- end_timestamp_min,
74
- end_timestamp_max,
75
- )
76
-
77
69
  stm = select(JobV2)
78
70
 
79
71
  if id is not None:
@@ -1,4 +1,3 @@
1
- from datetime import datetime
2
1
  from typing import Optional
3
2
 
4
3
  from fastapi import APIRouter
@@ -6,6 +5,7 @@ from fastapi import Depends
6
5
  from fastapi import HTTPException
7
6
  from fastapi import Response
8
7
  from fastapi import status
8
+ from pydantic.types import AwareDatetime
9
9
  from sqlalchemy.sql.operators import is_
10
10
  from sqlalchemy.sql.operators import is_not
11
11
  from sqlmodel import select
@@ -20,7 +20,6 @@ from fractal_server.app.routes.auth import current_active_superuser
20
20
  from fractal_server.app.routes.auth._aux_auth import (
21
21
  _verify_user_belongs_to_group,
22
22
  )
23
- from fractal_server.app.routes.aux import _raise_if_naive_datetime
24
23
  from fractal_server.app.schemas.v2 import TaskGroupActivityActionV2
25
24
  from fractal_server.app.schemas.v2 import TaskGroupActivityStatusV2
26
25
  from fractal_server.app.schemas.v2 import TaskGroupActivityV2Read
@@ -42,13 +41,11 @@ async def get_task_group_activity_list(
42
41
  pkg_name: Optional[str] = None,
43
42
  status: Optional[TaskGroupActivityStatusV2] = None,
44
43
  action: Optional[TaskGroupActivityActionV2] = None,
45
- timestamp_started_min: Optional[datetime] = None,
44
+ timestamp_started_min: Optional[AwareDatetime] = None,
46
45
  superuser: UserOAuth = Depends(current_active_superuser),
47
46
  db: AsyncSession = Depends(get_async_db),
48
47
  ) -> list[TaskGroupActivityV2Read]:
49
48
 
50
- _raise_if_naive_datetime(timestamp_started_min)
51
-
52
49
  stm = select(TaskGroupActivityV2)
53
50
  if task_group_activity_id is not None:
54
51
  stm = stm.where(TaskGroupActivityV2.id == task_group_activity_id)
@@ -96,19 +93,14 @@ async def query_task_group_list(
96
93
  active: Optional[bool] = None,
97
94
  pkg_name: Optional[str] = None,
98
95
  origin: Optional[TaskGroupV2OriginEnum] = None,
99
- timestamp_last_used_min: Optional[datetime] = None,
100
- timestamp_last_used_max: Optional[datetime] = None,
96
+ timestamp_last_used_min: Optional[AwareDatetime] = None,
97
+ timestamp_last_used_max: Optional[AwareDatetime] = None,
101
98
  user: UserOAuth = Depends(current_active_superuser),
102
99
  db: AsyncSession = Depends(get_async_db),
103
100
  ) -> list[TaskGroupReadV2]:
104
101
 
105
102
  stm = select(TaskGroupV2)
106
103
 
107
- _raise_if_naive_datetime(
108
- timestamp_last_used_max,
109
- timestamp_last_used_min,
110
- )
111
-
112
104
  if user_group_id is not None and private is True:
113
105
  raise HTTPException(
114
106
  status_code=status.HTTP_422_UNPROCESSABLE_ENTITY,
@@ -55,7 +55,7 @@ async def get_package_version_from_pypi(
55
55
  f"A TimeoutException occurred while getting {url}.\n"
56
56
  f"Original error: {str(e)}."
57
57
  )
58
- logger.error(error_msg)
58
+ logger.warning(error_msg)
59
59
  raise HTTPException(
60
60
  status_code=status.HTTP_422_UNPROCESSABLE_ENTITY,
61
61
  detail=error_msg,
@@ -65,7 +65,7 @@ async def get_package_version_from_pypi(
65
65
  f"An unknown error occurred while getting {url}. "
66
66
  f"Original error: {str(e)}."
67
67
  )
68
- logger.error(error_msg)
68
+ logger.warning(error_msg)
69
69
  raise HTTPException(
70
70
  status_code=status.HTTP_422_UNPROCESSABLE_ENTITY,
71
71
  detail=error_msg,
@@ -85,7 +85,7 @@ async def get_package_version_from_pypi(
85
85
  latest_version = response_data["info"]["version"]
86
86
  available_releases = response_data["releases"].keys()
87
87
  except KeyError as e:
88
- logger.error(
88
+ logger.warning(
89
89
  f"A KeyError occurred while getting {url}. "
90
90
  f"Original error: {str(e)}."
91
91
  )
@@ -239,6 +239,7 @@ async def apply_workflow(
239
239
  workflow_id=workflow.id,
240
240
  dataset_id=dataset.id,
241
241
  job_id=job.id,
242
+ user_id=user.id,
242
243
  user_settings=user_settings,
243
244
  worker_init=job.worker_init,
244
245
  slurm_user=user_settings.slurm_user,
@@ -1,4 +1,3 @@
1
- from datetime import datetime
2
1
  from typing import Optional
3
2
 
4
3
  from fastapi import APIRouter
@@ -6,6 +5,7 @@ from fastapi import Depends
6
5
  from fastapi import HTTPException
7
6
  from fastapi import Response
8
7
  from fastapi import status
8
+ from pydantic.types import AwareDatetime
9
9
  from sqlmodel import or_
10
10
  from sqlmodel import select
11
11
 
@@ -23,7 +23,6 @@ from fractal_server.app.routes.auth import current_active_user
23
23
  from fractal_server.app.routes.auth._aux_auth import (
24
24
  _verify_user_belongs_to_group,
25
25
  )
26
- from fractal_server.app.routes.aux import _raise_if_naive_datetime
27
26
  from fractal_server.app.schemas.v2 import TaskGroupActivityActionV2
28
27
  from fractal_server.app.schemas.v2 import TaskGroupActivityStatusV2
29
28
  from fractal_server.app.schemas.v2 import TaskGroupActivityV2Read
@@ -43,13 +42,11 @@ async def get_task_group_activity_list(
43
42
  pkg_name: Optional[str] = None,
44
43
  status: Optional[TaskGroupActivityStatusV2] = None,
45
44
  action: Optional[TaskGroupActivityActionV2] = None,
46
- timestamp_started_min: Optional[datetime] = None,
45
+ timestamp_started_min: Optional[AwareDatetime] = None,
47
46
  user: UserOAuth = Depends(current_active_user),
48
47
  db: AsyncSession = Depends(get_async_db),
49
48
  ) -> list[TaskGroupActivityV2Read]:
50
49
 
51
- _raise_if_naive_datetime(timestamp_started_min)
52
-
53
50
  stm = select(TaskGroupActivityV2).where(
54
51
  TaskGroupActivityV2.user_id == user.id
55
52
  )
@@ -70,6 +70,7 @@ def submit_workflow(
70
70
  workflow_id: int,
71
71
  dataset_id: int,
72
72
  job_id: int,
73
+ user_id: int,
73
74
  user_settings: UserSettings,
74
75
  worker_init: Optional[str] = None,
75
76
  slurm_user: Optional[str] = None,
@@ -90,6 +91,8 @@ def submit_workflow(
90
91
  job_id:
91
92
  Id of the job record which stores the state for the current
92
93
  workflow application.
94
+ user_id:
95
+ User ID.
93
96
  worker_init:
94
97
  Custom executor parameters that get parsed before the execution of
95
98
  each task.
@@ -312,6 +315,7 @@ def submit_workflow(
312
315
  process_workflow(
313
316
  workflow=workflow,
314
317
  dataset=dataset,
318
+ user_id=user_id,
315
319
  workflow_dir_local=WORKFLOW_DIR_LOCAL,
316
320
  workflow_dir_remote=WORKFLOW_DIR_REMOTE,
317
321
  logger_name=logger_name,
@@ -41,6 +41,7 @@ def process_workflow(
41
41
  last_task_index: Optional[int] = None,
42
42
  logger_name: str,
43
43
  job_attribute_filters: AttributeFiltersType,
44
+ user_id: int,
44
45
  # Slurm-specific
45
46
  user_cache_dir: Optional[str] = None,
46
47
  slurm_user: Optional[str] = None,
@@ -75,6 +76,7 @@ def process_workflow(
75
76
  Positional index of the last task to execute; if `None`, proceed
76
77
  until the last task.
77
78
  logger_name: Logger name
79
+ user_id:
78
80
  slurm_user:
79
81
  Username to impersonate to run the workflow. This argument is
80
82
  present for compatibility with the standard backend interface, but
@@ -126,4 +128,5 @@ def process_workflow(
126
128
  logger_name=logger_name,
127
129
  submit_setup_call=_local_submit_setup,
128
130
  job_attribute_filters=job_attribute_filters,
131
+ user_id=user_id,
129
132
  )
@@ -45,6 +45,7 @@ def process_workflow(
45
45
  job_attribute_filters: AttributeFiltersType,
46
46
  fractal_ssh: FractalSSH,
47
47
  worker_init: Optional[str] = None,
48
+ user_id: int,
48
49
  # Not used
49
50
  user_cache_dir: Optional[str] = None,
50
51
  slurm_user: Optional[str] = None,
@@ -94,4 +95,5 @@ def process_workflow(
94
95
  logger_name=logger_name,
95
96
  submit_setup_call=_slurm_submit_setup,
96
97
  job_attribute_filters=job_attribute_filters,
98
+ user_id=user_id,
97
99
  )
@@ -38,6 +38,7 @@ def process_workflow(
38
38
  last_task_index: Optional[int] = None,
39
39
  logger_name: str,
40
40
  job_attribute_filters: AttributeFiltersType,
41
+ user_id: int,
41
42
  # Slurm-specific
42
43
  user_cache_dir: Optional[str] = None,
43
44
  slurm_user: Optional[str] = None,
@@ -85,4 +86,5 @@ def process_workflow(
85
86
  logger_name=logger_name,
86
87
  submit_setup_call=_slurm_submit_setup,
87
88
  job_attribute_filters=job_attribute_filters,
89
+ user_id=user_id,
88
90
  )
@@ -18,6 +18,7 @@ from .runner_functions import run_v2_task_non_parallel
18
18
  from .runner_functions import run_v2_task_parallel
19
19
  from .task_interface import TaskOutput
20
20
  from fractal_server.app.db import get_sync_db
21
+ from fractal_server.app.models.v2 import AccountingRecord
21
22
  from fractal_server.app.models.v2 import DatasetV2
22
23
  from fractal_server.app.models.v2 import WorkflowTaskV2
23
24
  from fractal_server.app.schemas.v2.dataset import _DatasetHistoryItemV2
@@ -31,6 +32,7 @@ def execute_tasks_v2(
31
32
  wf_task_list: list[WorkflowTaskV2],
32
33
  dataset: DatasetV2,
33
34
  executor: ThreadPoolExecutor,
35
+ user_id: int,
34
36
  workflow_dir_local: Path,
35
37
  workflow_dir_remote: Optional[Path] = None,
36
38
  logger_name: Optional[str] = None,
@@ -88,7 +90,7 @@ def execute_tasks_v2(
88
90
  db.commit()
89
91
  # TASK EXECUTION (V2)
90
92
  if task.type == "non_parallel":
91
- current_task_output = run_v2_task_non_parallel(
93
+ current_task_output, num_tasks = run_v2_task_non_parallel(
92
94
  images=filtered_images,
93
95
  zarr_dir=zarr_dir,
94
96
  wftask=wftask,
@@ -96,22 +98,20 @@ def execute_tasks_v2(
96
98
  workflow_dir_local=workflow_dir_local,
97
99
  workflow_dir_remote=workflow_dir_remote,
98
100
  executor=executor,
99
- logger_name=logger_name,
100
101
  submit_setup_call=submit_setup_call,
101
102
  )
102
103
  elif task.type == "parallel":
103
- current_task_output = run_v2_task_parallel(
104
+ current_task_output, num_tasks = run_v2_task_parallel(
104
105
  images=filtered_images,
105
106
  wftask=wftask,
106
107
  task=task,
107
108
  workflow_dir_local=workflow_dir_local,
108
109
  workflow_dir_remote=workflow_dir_remote,
109
110
  executor=executor,
110
- logger_name=logger_name,
111
111
  submit_setup_call=submit_setup_call,
112
112
  )
113
113
  elif task.type == "compound":
114
- current_task_output = run_v2_task_compound(
114
+ current_task_output, num_tasks = run_v2_task_compound(
115
115
  images=filtered_images,
116
116
  zarr_dir=zarr_dir,
117
117
  wftask=wftask,
@@ -119,7 +119,6 @@ def execute_tasks_v2(
119
119
  workflow_dir_local=workflow_dir_local,
120
120
  workflow_dir_remote=workflow_dir_remote,
121
121
  executor=executor,
122
- logger_name=logger_name,
123
122
  submit_setup_call=submit_setup_call,
124
123
  )
125
124
  else:
@@ -144,6 +143,7 @@ def execute_tasks_v2(
144
143
  )
145
144
 
146
145
  # Update image list
146
+ num_new_images = 0
147
147
  current_task_output.check_zarr_urls_are_unique()
148
148
  for image_obj in current_task_output.image_list_updates:
149
149
  image = image_obj.model_dump()
@@ -246,6 +246,7 @@ def execute_tasks_v2(
246
246
  SingleImage(**new_image)
247
247
  # Add image into the dataset image list
248
248
  tmp_images.append(new_image)
249
+ num_new_images += 1
249
250
 
250
251
  # Remove images from tmp_images
251
252
  for img_zarr_url in current_task_output.image_list_removals:
@@ -281,4 +282,13 @@ def execute_tasks_v2(
281
282
  db.merge(db_dataset)
282
283
  db.commit()
283
284
 
285
+ # Create accounting record
286
+ record = AccountingRecord(
287
+ user_id=user_id,
288
+ num_tasks=num_tasks,
289
+ num_new_images=num_new_images,
290
+ )
291
+ db.add(record)
292
+ db.commit()
293
+
284
294
  logger.debug(f'END {wftask.order}-th task (name="{task_name}")')
@@ -115,9 +115,8 @@ def run_v2_task_non_parallel(
115
115
  workflow_dir_local: Path,
116
116
  workflow_dir_remote: Optional[Path] = None,
117
117
  executor: Executor,
118
- logger_name: Optional[str] = None,
119
118
  submit_setup_call: Callable = no_op_submit_setup_call,
120
- ) -> TaskOutput:
119
+ ) -> tuple[TaskOutput, int]:
121
120
  """
122
121
  This runs server-side (see `executor` argument)
123
122
  """
@@ -154,10 +153,11 @@ def run_v2_task_non_parallel(
154
153
  **executor_options,
155
154
  )
156
155
  output = future.result()
156
+ num_tasks = 1
157
157
  if output is None:
158
- return TaskOutput()
158
+ return (TaskOutput(), num_tasks)
159
159
  else:
160
- return _cast_and_validate_TaskOutput(output)
160
+ return (_cast_and_validate_TaskOutput(output), num_tasks)
161
161
 
162
162
 
163
163
  def run_v2_task_parallel(
@@ -168,12 +168,11 @@ def run_v2_task_parallel(
168
168
  executor: Executor,
169
169
  workflow_dir_local: Path,
170
170
  workflow_dir_remote: Optional[Path] = None,
171
- logger_name: Optional[str] = None,
172
171
  submit_setup_call: Callable = no_op_submit_setup_call,
173
- ) -> TaskOutput:
172
+ ) -> tuple[TaskOutput, int]:
174
173
 
175
174
  if len(images) == 0:
176
- return TaskOutput()
175
+ return (TaskOutput(), 0)
177
176
 
178
177
  _check_parallelization_list_size(images)
179
178
 
@@ -216,8 +215,9 @@ def run_v2_task_parallel(
216
215
  else:
217
216
  outputs[ind] = _cast_and_validate_TaskOutput(output)
218
217
 
218
+ num_tasks = len(images)
219
219
  merged_output = merge_outputs(outputs)
220
- return merged_output
220
+ return (merged_output, num_tasks)
221
221
 
222
222
 
223
223
  def run_v2_task_compound(
@@ -229,7 +229,6 @@ def run_v2_task_compound(
229
229
  executor: Executor,
230
230
  workflow_dir_local: Path,
231
231
  workflow_dir_remote: Optional[Path] = None,
232
- logger_name: Optional[str] = None,
233
232
  submit_setup_call: Callable = no_op_submit_setup_call,
234
233
  ) -> TaskOutput:
235
234
 
@@ -273,11 +272,13 @@ def run_v2_task_compound(
273
272
  parallelization_list = init_task_output.parallelization_list
274
273
  parallelization_list = deduplicate_list(parallelization_list)
275
274
 
275
+ num_task = 1 + len(parallelization_list)
276
+
276
277
  # 3/B: parallel part of a compound task
277
278
  _check_parallelization_list_size(parallelization_list)
278
279
 
279
280
  if len(parallelization_list) == 0:
280
- return TaskOutput()
281
+ return (TaskOutput(), 0)
281
282
 
282
283
  list_function_kwargs = []
283
284
  for ind, parallelization_item in enumerate(parallelization_list):
@@ -313,4 +314,4 @@ def run_v2_task_compound(
313
314
  outputs[ind] = validated_output
314
315
 
315
316
  merged_output = merge_outputs(outputs)
316
- return merged_output
317
+ return (merged_output, num_task)
@@ -1,3 +1,4 @@
1
+ from .accounting import AccountingRecordRead # noqa F401
1
2
  from .dataset import DatasetCreateV2 # noqa F401
2
3
  from .dataset import DatasetExportV2 # noqa F401
3
4
  from .dataset import DatasetImportV2 # noqa F401
@@ -0,0 +1,18 @@
1
+ from datetime import datetime
2
+
3
+ from pydantic import BaseModel
4
+ from pydantic import field_serializer
5
+ from pydantic.types import AwareDatetime
6
+
7
+
8
+ class AccountingRecordRead(BaseModel):
9
+
10
+ id: int
11
+ user_id: int
12
+ timestamp: AwareDatetime
13
+ num_tasks: int
14
+ num_new_images: int
15
+
16
+ @field_serializer("timestamp")
17
+ def serialize_datetime(v: datetime) -> str:
18
+ return v.isoformat()