fractal-server 1.4.0a8__tar.gz → 1.4.0a9__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (83) hide show
  1. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/PKG-INFO +4 -3
  2. fractal_server-1.4.0a9/fractal_server/__init__.py +1 -0
  3. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/db/__init__.py +8 -2
  4. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/pyproject.toml +4 -4
  5. fractal_server-1.4.0a8/fractal_server/__init__.py +0 -1
  6. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/LICENSE +0 -0
  7. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/README.md +0 -0
  8. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/__main__.py +0 -0
  9. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/alembic.ini +0 -0
  10. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/__init__.py +0 -0
  11. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/models/__init__.py +0 -0
  12. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/models/dataset.py +0 -0
  13. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/models/job.py +0 -0
  14. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/models/linkuserproject.py +0 -0
  15. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/models/project.py +0 -0
  16. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/models/security.py +0 -0
  17. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/models/state.py +0 -0
  18. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/models/task.py +0 -0
  19. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/models/workflow.py +0 -0
  20. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/routes/__init__.py +0 -0
  21. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/routes/admin.py +0 -0
  22. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/routes/api/__init__.py +0 -0
  23. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/routes/api/v1/__init__.py +0 -0
  24. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/routes/api/v1/_aux_functions.py +0 -0
  25. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/routes/api/v1/dataset.py +0 -0
  26. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/routes/api/v1/job.py +0 -0
  27. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/routes/api/v1/project.py +0 -0
  28. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/routes/api/v1/task.py +0 -0
  29. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/routes/api/v1/task_collection.py +0 -0
  30. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/routes/api/v1/workflow.py +0 -0
  31. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/routes/api/v1/workflowtask.py +0 -0
  32. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/routes/auth.py +0 -0
  33. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/.gitignore +0 -0
  34. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/__init__.py +0 -0
  35. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/_common.py +0 -0
  36. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/_local/__init__.py +0 -0
  37. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/_local/_local_config.py +0 -0
  38. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/_local/_submit_setup.py +0 -0
  39. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/_local/executor.py +0 -0
  40. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/_slurm/.gitignore +0 -0
  41. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/_slurm/__init__.py +0 -0
  42. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/_slurm/_batching.py +0 -0
  43. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/_slurm/_executor_wait_thread.py +0 -0
  44. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/_slurm/_slurm_config.py +0 -0
  45. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/_slurm/_submit_setup.py +0 -0
  46. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/_slurm/_subprocess_run_as_user.py +0 -0
  47. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/_slurm/executor.py +0 -0
  48. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/_slurm/remote.py +0 -0
  49. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/common.py +0 -0
  50. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/runner/handle_failed_job.py +0 -0
  51. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/schemas/__init__.py +0 -0
  52. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/schemas/_validators.py +0 -0
  53. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/schemas/applyworkflow.py +0 -0
  54. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/schemas/dataset.py +0 -0
  55. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/schemas/json_schemas/manifest.json +0 -0
  56. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/schemas/manifest.py +0 -0
  57. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/schemas/project.py +0 -0
  58. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/schemas/state.py +0 -0
  59. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/schemas/task.py +0 -0
  60. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/schemas/task_collection.py +0 -0
  61. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/schemas/user.py +0 -0
  62. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/schemas/workflow.py +0 -0
  63. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/app/security/__init__.py +0 -0
  64. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/config.py +0 -0
  65. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/logger.py +0 -0
  66. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/main.py +0 -0
  67. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/migrations/README +0 -0
  68. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/migrations/env.py +0 -0
  69. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/migrations/script.py.mako +0 -0
  70. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/migrations/versions/4c308bcaea2b_add_task_args_schema_and_task_args_.py +0 -0
  71. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/migrations/versions/50a13d6138fd_initial_schema.py +0 -0
  72. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/migrations/versions/70e77f1c38b0_add_applyworkflow_first_task_index_and_.py +0 -0
  73. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/migrations/versions/84bf0fffde30_add_dumps_to_applyworkflow.py +0 -0
  74. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/migrations/versions/8f79bd162e35_add_docs_info_and_docs_link_to_task_.py +0 -0
  75. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/migrations/versions/99ea79d9e5d2_add_dataset_history.py +0 -0
  76. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/migrations/versions/a7f4d6137b53_add_workflow_dump_to_applyworkflow.py +0 -0
  77. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/migrations/versions/e75cac726012_make_applyworkflow_start_timestamp_not_.py +0 -0
  78. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/migrations/versions/f384e1c0cf5d_drop_task_default_args_columns.py +0 -0
  79. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/py.typed +0 -0
  80. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/syringe.py +0 -0
  81. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/tasks/__init__.py +0 -0
  82. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/tasks/collection.py +0 -0
  83. {fractal_server-1.4.0a8 → fractal_server-1.4.0a9}/fractal_server/utils.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: fractal-server
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- Version: 1.4.0a8
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+ Version: 1.4.0a9
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  Summary: Server component of the Fractal analytics platform
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  Home-page: https://github.com/fractal-analytics-platform/fractal-server
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  License: BSD-3-Clause
@@ -12,6 +12,7 @@ Classifier: Programming Language :: Python :: 3
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  Classifier: Programming Language :: Python :: 3.9
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  Classifier: Programming Language :: Python :: 3.10
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  Classifier: Programming Language :: Python :: 3.11
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+ Classifier: Programming Language :: Python :: 3.12
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  Provides-Extra: gunicorn
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  Provides-Extra: postgres
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  Provides-Extra: slurm
@@ -26,8 +27,8 @@ Requires-Dist: gunicorn (>=20.1.0,<21.0.0) ; extra == "gunicorn"
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  Requires-Dist: psycopg2 (>=2.9.5,<3.0.0) ; extra == "postgres"
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  Requires-Dist: pydantic (>=1.10.8,<2)
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  Requires-Dist: python-dotenv (>=0.20.0,<0.21.0)
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- Requires-Dist: sqlalchemy[asyncio] (==1.4.50)
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- Requires-Dist: sqlmodel (>=0.0.11,<0.0.12)
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+ Requires-Dist: sqlalchemy[asyncio] (>=2.0.23,<2.1)
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+ Requires-Dist: sqlmodel (>=0.0.12,<0.0.13)
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  Requires-Dist: uvicorn (>=0.20.0,<0.21.0)
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  Project-URL: Changelog, https://github.com/fractal-analytics-platform/fractal-server/blob/main/CHANGELOG.md
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  Project-URL: Documentation, https://fractal-analytics-platform.github.io/fractal-server
@@ -0,0 +1 @@
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+ __VERSION__ = "1.4.0a9"
@@ -82,11 +82,17 @@ class DB:
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  )
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  cls._async_session_maker = sessionmaker(
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- cls._engine_async, class_=AsyncSession, expire_on_commit=False
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+ cls._engine_async,
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+ class_=AsyncSession,
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+ expire_on_commit=False,
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+ future=True,
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  )
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  cls._sync_session_maker = sessionmaker(
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- bind=cls._engine_sync, autocommit=False, autoflush=False
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+ bind=cls._engine_sync,
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+ autocommit=False,
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+ autoflush=False,
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+ future=True,
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  )
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  @event.listens_for(cls._engine_sync, "connect")
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "fractal-server"
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- version = "1.4.0a8"
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+ version = "1.4.0a9"
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  description = "Server component of the Fractal analytics platform"
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  authors = [
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  "Jacopo Nespolo <jacopo.nespolo@exact-lab.it>",
@@ -24,12 +24,12 @@ exclude = [
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  python = "^3.9"
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  python-dotenv = "^0.20.0"
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  fastapi = "^0.103.0"
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- sqlmodel = "^0.0.11"
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+ sqlmodel = "^0.0.12"
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+ sqlalchemy = {extras = ["asyncio"], version = ">=2.0.23,<2.1"}
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  aiosqlite = "^0.17.0"
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  fastapi-users = {extras = ["oauth"], version = "^12.1.0"}
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  alembic = "^1.9.1"
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  uvicorn = "^0.20.0"
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- sqlalchemy = {extras = ["asyncio"], version = "1.4.50"}
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  pydantic = ">=1.10.8,<2"
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  clusterfutures = { version = "^0.5", optional = true}
@@ -82,7 +82,7 @@ filterwarnings = [
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  ]
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  [tool.bumpver]
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- current_version = "1.4.0a8"
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+ current_version = "1.4.0a9"
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  version_pattern = "MAJOR.MINOR.PATCH[PYTAGNUM]"
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  commit_message = "bump version {old_version} -> {new_version}"
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  commit = true
@@ -1 +0,0 @@
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- __VERSION__ = "1.4.0a8"