fractal-memory 0.3.0__tar.gz

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  1. fractal_memory-0.3.0/.gitignore +50 -0
  2. fractal_memory-0.3.0/CHANGELOG.md +50 -0
  3. fractal_memory-0.3.0/CONTRIBUTING.md +79 -0
  4. fractal_memory-0.3.0/LICENSE +21 -0
  5. fractal_memory-0.3.0/PKG-INFO +604 -0
  6. fractal_memory-0.3.0/README.md +556 -0
  7. fractal_memory-0.3.0/pyproject.toml +82 -0
  8. fractal_memory-0.3.0/src/fractal_memory/__init__.py +1175 -0
  9. fractal_memory-0.3.0/src/fractal_memory/apoptosis.py +310 -0
  10. fractal_memory-0.3.0/src/fractal_memory/associations.py +385 -0
  11. fractal_memory-0.3.0/src/fractal_memory/bandits.py +226 -0
  12. fractal_memory-0.3.0/src/fractal_memory/buffer.py +135 -0
  13. fractal_memory-0.3.0/src/fractal_memory/cli.py +885 -0
  14. fractal_memory-0.3.0/src/fractal_memory/config.py +348 -0
  15. fractal_memory-0.3.0/src/fractal_memory/consolidation.py +491 -0
  16. fractal_memory-0.3.0/src/fractal_memory/dashboard/__init__.py +1 -0
  17. fractal_memory-0.3.0/src/fractal_memory/dashboard/app.py +1581 -0
  18. fractal_memory-0.3.0/src/fractal_memory/dashboard/static/dashboard.js +45 -0
  19. fractal_memory-0.3.0/src/fractal_memory/dashboard/static/style.css +1075 -0
  20. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/apoptosis.html +314 -0
  21. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/bandits.html +439 -0
  22. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/base.html +373 -0
  23. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/brain.html +206 -0
  24. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/buffer.html +271 -0
  25. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/cascade.html +348 -0
  26. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/config.html +355 -0
  27. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/consolidation.html +380 -0
  28. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/domain_detail.html +41 -0
  29. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/dreaming.html +304 -0
  30. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/feedback.html +403 -0
  31. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/folding.html +307 -0
  32. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/guide.html +1033 -0
  33. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/index.html +122 -0
  34. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/lifecycle.html +102 -0
  35. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/maintenance.html +348 -0
  36. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/memory_detail.html +71 -0
  37. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/morphogens.html +373 -0
  38. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/niche.html +280 -0
  39. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/organism.html +327 -0
  40. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/pipeline.html +218 -0
  41. fractal_memory-0.3.0/src/fractal_memory/dashboard/templates/states.html +411 -0
  42. fractal_memory-0.3.0/src/fractal_memory/domains.py +168 -0
  43. fractal_memory-0.3.0/src/fractal_memory/dreaming.py +338 -0
  44. fractal_memory-0.3.0/src/fractal_memory/embeddings.py +62 -0
  45. fractal_memory-0.3.0/src/fractal_memory/feedback.py +661 -0
  46. fractal_memory-0.3.0/src/fractal_memory/folding.py +212 -0
  47. fractal_memory-0.3.0/src/fractal_memory/gate.py +144 -0
  48. fractal_memory-0.3.0/src/fractal_memory/kalman.py +81 -0
  49. fractal_memory-0.3.0/src/fractal_memory/lifecycle.py +108 -0
  50. fractal_memory-0.3.0/src/fractal_memory/llm.py +234 -0
  51. fractal_memory-0.3.0/src/fractal_memory/maintenance.py +389 -0
  52. fractal_memory-0.3.0/src/fractal_memory/mcp/__init__.py +1 -0
  53. fractal_memory-0.3.0/src/fractal_memory/mcp/server.py +625 -0
  54. fractal_memory-0.3.0/src/fractal_memory/models.py +141 -0
  55. fractal_memory-0.3.0/src/fractal_memory/morphogens.py +486 -0
  56. fractal_memory-0.3.0/src/fractal_memory/niche.py +259 -0
  57. fractal_memory-0.3.0/src/fractal_memory/py.typed +0 -0
  58. fractal_memory-0.3.0/src/fractal_memory/retrieval.py +327 -0
  59. fractal_memory-0.3.0/src/fractal_memory/scar.py +248 -0
  60. fractal_memory-0.3.0/src/fractal_memory/self_model.py +288 -0
  61. fractal_memory-0.3.0/src/fractal_memory/session.py +310 -0
  62. fractal_memory-0.3.0/src/fractal_memory/states.py +145 -0
  63. fractal_memory-0.3.0/src/fractal_memory/storage.py +1765 -0
  64. fractal_memory-0.3.0/src/fractal_memory/zoom.py +113 -0
  65. fractal_memory-0.3.0/tests/__init__.py +1 -0
  66. fractal_memory-0.3.0/tests/conftest.py +96 -0
  67. fractal_memory-0.3.0/tests/test_associations.py +270 -0
  68. fractal_memory-0.3.0/tests/test_benchmark.py +150 -0
  69. fractal_memory-0.3.0/tests/test_buffer.py +123 -0
  70. fractal_memory-0.3.0/tests/test_config.py +70 -0
  71. fractal_memory-0.3.0/tests/test_consolidation.py +297 -0
  72. fractal_memory-0.3.0/tests/test_dashboard.py +530 -0
  73. fractal_memory-0.3.0/tests/test_domains.py +174 -0
  74. fractal_memory-0.3.0/tests/test_embeddings.py +81 -0
  75. fractal_memory-0.3.0/tests/test_feedback.py +331 -0
  76. fractal_memory-0.3.0/tests/test_gate.py +196 -0
  77. fractal_memory-0.3.0/tests/test_habituation.py +91 -0
  78. fractal_memory-0.3.0/tests/test_integration.py +275 -0
  79. fractal_memory-0.3.0/tests/test_kill_gate_p3.py +383 -0
  80. fractal_memory-0.3.0/tests/test_lifecycle.py +171 -0
  81. fractal_memory-0.3.0/tests/test_mcp_dashboard_colaunch.py +275 -0
  82. fractal_memory-0.3.0/tests/test_models.py +166 -0
  83. fractal_memory-0.3.0/tests/test_phase2_benchmark.py +222 -0
  84. fractal_memory-0.3.0/tests/test_phase2_integration.py +256 -0
  85. fractal_memory-0.3.0/tests/test_phase3_apoptosis.py +298 -0
  86. fractal_memory-0.3.0/tests/test_phase3_bandits.py +323 -0
  87. fractal_memory-0.3.0/tests/test_phase3_cli.py +579 -0
  88. fractal_memory-0.3.0/tests/test_phase3_dreaming.py +556 -0
  89. fractal_memory-0.3.0/tests/test_phase3_folding.py +195 -0
  90. fractal_memory-0.3.0/tests/test_phase3_kalman.py +96 -0
  91. fractal_memory-0.3.0/tests/test_phase3_maintenance.py +306 -0
  92. fractal_memory-0.3.0/tests/test_phase3_morphogens.py +332 -0
  93. fractal_memory-0.3.0/tests/test_phase3_niche.py +633 -0
  94. fractal_memory-0.3.0/tests/test_phase3_self_model.py +323 -0
  95. fractal_memory-0.3.0/tests/test_phase3_states.py +211 -0
  96. fractal_memory-0.3.0/tests/test_property.py +197 -0
  97. fractal_memory-0.3.0/tests/test_real_embeddings.py +214 -0
  98. fractal_memory-0.3.0/tests/test_real_integration.py +321 -0
  99. fractal_memory-0.3.0/tests/test_real_phase3.py +508 -0
  100. fractal_memory-0.3.0/tests/test_retrieval.py +174 -0
  101. fractal_memory-0.3.0/tests/test_scar.py +215 -0
  102. fractal_memory-0.3.0/tests/test_security.py +121 -0
  103. fractal_memory-0.3.0/tests/test_session.py +183 -0
  104. fractal_memory-0.3.0/tests/test_session_summaries.py +423 -0
  105. fractal_memory-0.3.0/tests/test_storage.py +368 -0
  106. fractal_memory-0.3.0/tests/test_stress_concurrency.py +348 -0
  107. fractal_memory-0.3.0/tests/test_stress_scale.py +348 -0
  108. fractal_memory-0.3.0/tests/test_zoom.py +96 -0
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+ # Python
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+ __pycache__/
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+ *.py[cod]
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+ *.egg-info/
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+ *.egg
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+ *.whl
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+ .eggs/
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+ dist/
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+ build/
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+
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+ # Virtual environments
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+ venv/
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+ .venv/
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+
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+ # Databases (user data)
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+ *.db
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+ *.sqlite3
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+
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+ # Logs
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+ *.log
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+
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+ # Environment files
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+ .env
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+
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+ # macOS
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+ .DS_Store
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+
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+ # Testing / Coverage
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+ .hypothesis/
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+ .pytest_cache/
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+ _playwright/
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+ .coverage
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+ htmlcov/
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+ coverage.xml
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+
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+ # Node
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+ node_modules/
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+
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+ # IDE
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+ .idea/
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+ .vscode/
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+
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+ # MCP config (contains user-specific paths)
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+ .mcp.json
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+
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+ # Internal docs and experiments (not for public repo)
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+ internal/
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+
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+ # Claude Code settings (user-specific hooks and config)
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+ .claude/
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+ # Changelog
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+
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+ All notable changes to this project will be documented in this file.
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+
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+ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
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+ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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+
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+ ## [Unreleased]
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+
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+ ## [0.3.0] - 2026-04-07
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+
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+ ### Added
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+
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+ **Phase 1 — Pioneer**
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+ - `FractalMemory` core class with async `store()`, `retrieve()`, `session_start()`, `session_end()`
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+ - 5-level zoom system (L0 tag → L1 label → L2 summary → L3 full → L4 raw)
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+ - Token-budgeted retrieval: top 200 as labels, top 50 as summaries, top 10 as full context
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+ - Memory lifecycle: probation → confirmed → permanent → safety-critical
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+ - Intensity-weighted storage with automatic gating
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+ - Session bootstrap with prior context injection
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+ - Sentence-transformer embeddings with cosine similarity scoring
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+
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+ **Phase 2 — Shrub**
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+ - Association graph: edges form between co-retrieved memories, weights decay over time
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+ - Scar tissue: corrections leave permanent repair markers, penalize future retrieval
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+ - Kintsugi: golden seams on corrected memories (visible in dashboard)
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+ - Consolidation engine: merge similar memories, strengthen edges, expire scars
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+ - Danger theory: feedback signals from user messages (surprise, contradiction, resolution)
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+ - LLM judge: rates memory usefulness at session end
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+ - Multi-domain support with domain isolation
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+ - 19-page real-time dashboard (FastAPI + Chart.js + D3.js)
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+
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+ **Phase 3 — Forest**
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+ - Morphogenetic self-calibration: adaptive sigmoid response curves per parameter
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+ - System states: FLOW / STRESS / CURIOSITY state machine with parameter multipliers
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+ - Contextual bandits: Thompson sampling for retrieval strategy selection
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+ - Dreaming: slow-wave consolidation + REM recombination at session end
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+ - Apoptosis: controlled pruning of low-vitality memories with fragment salvage
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+ - Niche construction: Louvain clustering for domain reorganization proposals
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+ - Cascade detector: Extended Kalman Filter for system health prediction
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+ - Dimensional folding: operational regime detection (BOOTSTRAP → LEARNING → MATURE)
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+ - Maintenance scheduler: tiered (intra-session, daily, weekly, monthly) background maintenance
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+ - Self-model: organism health metrics, parameter drift detection
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+ - MCP server with auto-session management and dashboard co-launch
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+ - CLI (`fractal`) with store, retrieve, inspect, export, health, maintenance commands
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+
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+ ### Security
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+ - SQL injection protection via parameterized queries throughout
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+ - Input validation on all public API boundaries
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+ - Domain name sanitization (alphanumeric + hyphens/underscores/dots only)
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+ # Contributing to Fractal Memory
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+
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+ ## Development Setup
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+
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+ ```bash
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+ # Clone
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+ git clone https://github.com/entropyvector/fractal-memory.git
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+ cd fractal-memory
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+
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+ # Create virtual environment
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+ python3.11 -m venv .venv
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+ source .venv/bin/activate
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+
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+ # Install with all extras
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+ pip install -e ".[dev,dashboard]"
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+ ```
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+
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+ ## Running Tests
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+
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+ ```bash
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+ pytest
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+ ```
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+
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+ Tests use `pytest-asyncio` with `asyncio_mode = "auto"` — async test functions are detected automatically.
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+
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+ ## Code Style
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+
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+ - **Async-first** — all I/O must be async. No sync database drivers in async contexts.
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+ - **Type annotations** on all public functions.
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+ - **No hardcoding** — all configurable parameters go in `FractalConfig` (`src/fractal_memory/config.py`).
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+ - **Extend, don't rewrite** — no phase may rewrite prior phase code. Use hooks, callbacks, or new modules.
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+ - **Single source of truth** — `FractalConfig` is the only config object. No shadow configs.
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+
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+ See `internal/requirements/CODE_REQUIREMENTS.md` for the full specification.
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+
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+ ## Project Structure
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+
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+ ```
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+ src/fractal_memory/
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+ ├── __init__.py # FractalMemory main class
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+ ├── config.py # FractalConfig — all parameters
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+ ├── storage.py # SQLite persistence (async via aiosqlite)
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+ ├── models.py # Data models (Memory, Session, etc.)
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+ ├── cli.py # Click CLI (fractal command)
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+ ├── mcp/
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+ │ └── server.py # MCP server (fractal-memory-mcp)
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+ └── dashboard/ # FastAPI dashboard
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+ ├── app.py
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+ ├── templates/
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+ └── static/
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+ ```
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+
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+ ## Architecture
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+
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+ The codebase is organized by evolutionary phases. Each phase builds on the previous:
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+
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+ - **Phase 1 (Pioneer):** Core store/retrieve, 5 zoom levels, lifecycle, gate
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+ - **Phase 2 (Shrub):** Association network, danger theory, scar tissue, consolidation
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+ - **Phase 3 (Forest):** Morphogenetic fields, niche construction, dreaming, maintenance
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+ - **Phase 4 (Old Growth):** Aliveness diagnostic, memory packs, cross-domain (planned)
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+
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+ See `internal/plans/` for detailed phase plans.
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+
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+ ## Pull Request Process
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+
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+ 1. Fork the repository
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+ 2. Create a feature branch from `main`
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+ 3. Make your changes (follow the code style above)
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+ 4. Add tests for new functionality
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+ 5. Run `pytest` and ensure all tests pass
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+ 6. Submit a PR against `main`
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+
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+ ## Reporting Issues
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+
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+ Open an issue at https://github.com/entropyvector/fractal-memory/issues with:
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+ - What you expected to happen
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+ - What actually happened
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+ - Steps to reproduce
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+ - Your Python version and OS
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+ MIT License
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+
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+ Copyright (c) 2025-2026 Zaur Jafarov
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+
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+ Permission is hereby granted, free of charge, to any person obtaining a copy
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+ of this software and associated documentation files (the "Software"), to deal
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+ in the Software without restriction, including without limitation the rights
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+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the Software is
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+ furnished to do so, subject to the following conditions:
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+
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+ The above copyright notice and this permission notice shall be included in all
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+ copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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+ SOFTWARE.