fpm-rs 0.1.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (126) hide show
  1. fpm_rs-0.1.0/Cargo.lock +1389 -0
  2. fpm_rs-0.1.0/Cargo.toml +94 -0
  3. fpm_rs-0.1.0/LICENSE-MIT +22 -0
  4. fpm_rs-0.1.0/PKG-INFO +558 -0
  5. fpm_rs-0.1.0/README.md +530 -0
  6. fpm_rs-0.1.0/dataset_registry.json +4 -0
  7. fpm_rs-0.1.0/dataset_spec.md +678 -0
  8. fpm_rs-0.1.0/examples/benchmark_algorithms.rs +151 -0
  9. fpm_rs-0.1.0/examples/callbacks_save_images.rs +33 -0
  10. fpm_rs-0.1.0/examples/compare_algorithms.rs +36 -0
  11. fpm_rs-0.1.0/examples/epry_pupil_recovery.rs +41 -0
  12. fpm_rs-0.1.0/examples/load_local_dataset.rs +62 -0
  13. fpm_rs-0.1.0/examples/load_measurement_manifest.rs +24 -0
  14. fpm_rs-0.1.0/examples/reconstruct_from_kvectors.rs +50 -0
  15. fpm_rs-0.1.0/examples/simulate_and_reconstruct.rs +38 -0
  16. fpm_rs-0.1.0/examples/support/mod.rs +28 -0
  17. fpm_rs-0.1.0/pyproject.toml +47 -0
  18. fpm_rs-0.1.0/python/Cargo.toml +15 -0
  19. fpm_rs-0.1.0/python/examples/diagnostics_debug.ipynb +115 -0
  20. fpm_rs-0.1.0/python/examples/diagnostics_plots.ipynb +122 -0
  21. fpm_rs-0.1.0/python/fpm_rs/__init__.py +62 -0
  22. fpm_rs-0.1.0/python/fpm_rs/__init__.pyi +743 -0
  23. fpm_rs-0.1.0/python/fpm_rs/datasets/__init__.py +5 -0
  24. fpm_rs-0.1.0/python/fpm_rs/datasets/__main__.py +3 -0
  25. fpm_rs-0.1.0/python/fpm_rs/datasets/cli.py +73 -0
  26. fpm_rs-0.1.0/python/fpm_rs/diagnostics/__init__.py +14 -0
  27. fpm_rs-0.1.0/python/fpm_rs/diagnostics/__main__.py +5 -0
  28. fpm_rs-0.1.0/python/fpm_rs/diagnostics/cli.py +29 -0
  29. fpm_rs-0.1.0/python/fpm_rs/diagnostics/io.py +67 -0
  30. fpm_rs-0.1.0/python/fpm_rs/diagnostics/report.py +135 -0
  31. fpm_rs-0.1.0/python/fpm_rs/plot.py +640 -0
  32. fpm_rs-0.1.0/python/fpm_rs/py.typed +0 -0
  33. fpm_rs-0.1.0/python/src/arrays.rs +63 -0
  34. fpm_rs-0.1.0/python/src/config.rs +621 -0
  35. fpm_rs-0.1.0/python/src/datasets.rs +355 -0
  36. fpm_rs-0.1.0/python/src/errors.rs +74 -0
  37. fpm_rs-0.1.0/python/src/lib.rs +23 -0
  38. fpm_rs-0.1.0/python/src/measurements.rs +162 -0
  39. fpm_rs-0.1.0/python/src/model.rs +145 -0
  40. fpm_rs-0.1.0/python/src/reconstruction.rs +1325 -0
  41. fpm_rs-0.1.0/python/src/simulation.rs +310 -0
  42. fpm_rs-0.1.0/python/tests/conftest.py +45 -0
  43. fpm_rs-0.1.0/python/tests/test_callbacks_and_checkpoints.py +95 -0
  44. fpm_rs-0.1.0/python/tests/test_configuration.py +102 -0
  45. fpm_rs-0.1.0/python/tests/test_datasets.py +71 -0
  46. fpm_rs-0.1.0/python/tests/test_diagnostic_notebooks.py +99 -0
  47. fpm_rs-0.1.0/python/tests/test_diagnostics.py +185 -0
  48. fpm_rs-0.1.0/python/tests/test_gil.py +68 -0
  49. fpm_rs-0.1.0/python/tests/test_measurements_and_simulation.py +101 -0
  50. fpm_rs-0.1.0/python/tests/test_plotting.py +49 -0
  51. fpm_rs-0.1.0/python/tests/test_reconstruction.py +121 -0
  52. fpm_rs-0.1.0/src/algorithms/admm.rs +444 -0
  53. fpm_rs-0.1.0/src/algorithms/alternating_projection.rs +134 -0
  54. fpm_rs-0.1.0/src/algorithms/common.rs +390 -0
  55. fpm_rs-0.1.0/src/algorithms/epry.rs +251 -0
  56. fpm_rs-0.1.0/src/algorithms/fpie.rs +137 -0
  57. fpm_rs-0.1.0/src/algorithms/gradient_descent.rs +1096 -0
  58. fpm_rs-0.1.0/src/algorithms/mod.rs +119 -0
  59. fpm_rs-0.1.0/src/algorithms/regularization.rs +120 -0
  60. fpm_rs-0.1.0/src/array.rs +148 -0
  61. fpm_rs-0.1.0/src/backend/cpu.rs +282 -0
  62. fpm_rs-0.1.0/src/backend/mod.rs +8 -0
  63. fpm_rs-0.1.0/src/backend/traits.rs +96 -0
  64. fpm_rs-0.1.0/src/benchmark.rs +498 -0
  65. fpm_rs-0.1.0/src/bin/fpm-datasets.rs +165 -0
  66. fpm_rs-0.1.0/src/callbacks/checkpoint.rs +37 -0
  67. fpm_rs-0.1.0/src/callbacks/context.rs +62 -0
  68. fpm_rs-0.1.0/src/callbacks/csv_logger.rs +48 -0
  69. fpm_rs-0.1.0/src/callbacks/early_stop.rs +65 -0
  70. fpm_rs-0.1.0/src/callbacks/mod.rs +13 -0
  71. fpm_rs-0.1.0/src/callbacks/progress.rs +44 -0
  72. fpm_rs-0.1.0/src/callbacks/save_image.rs +176 -0
  73. fpm_rs-0.1.0/src/complex.rs +33 -0
  74. fpm_rs-0.1.0/src/configuration.rs +413 -0
  75. fpm_rs-0.1.0/src/datasets/loader.rs +340 -0
  76. fpm_rs-0.1.0/src/datasets/mod.rs +18 -0
  77. fpm_rs-0.1.0/src/datasets/registry.rs +897 -0
  78. fpm_rs-0.1.0/src/datasets/subset.rs +434 -0
  79. fpm_rs-0.1.0/src/diagnostics/coverage.rs +100 -0
  80. fpm_rs-0.1.0/src/diagnostics/frame.rs +130 -0
  81. fpm_rs-0.1.0/src/diagnostics/history.rs +25 -0
  82. fpm_rs-0.1.0/src/diagnostics/iteration.rs +18 -0
  83. fpm_rs-0.1.0/src/diagnostics/loss.rs +58 -0
  84. fpm_rs-0.1.0/src/diagnostics/metrics.rs +161 -0
  85. fpm_rs-0.1.0/src/diagnostics/mod.rs +23 -0
  86. fpm_rs-0.1.0/src/diagnostics/raw_stack.rs +63 -0
  87. fpm_rs-0.1.0/src/diagnostics/recorder.rs +305 -0
  88. fpm_rs-0.1.0/src/diagnostics/serialization.rs +35 -0
  89. fpm_rs-0.1.0/src/error.rs +39 -0
  90. fpm_rs-0.1.0/src/experiment/illumination.rs +280 -0
  91. fpm_rs-0.1.0/src/experiment/led_array.rs +189 -0
  92. fpm_rs-0.1.0/src/experiment/mod.rs +12 -0
  93. fpm_rs-0.1.0/src/experiment/optics.rs +114 -0
  94. fpm_rs-0.1.0/src/experiment/spherical.rs +780 -0
  95. fpm_rs-0.1.0/src/image_io.rs +228 -0
  96. fpm_rs-0.1.0/src/lib.rs +25 -0
  97. fpm_rs-0.1.0/src/measurements/lazy.rs +705 -0
  98. fpm_rs-0.1.0/src/measurements/manifest.rs +91 -0
  99. fpm_rs-0.1.0/src/measurements/metadata.rs +30 -0
  100. fpm_rs-0.1.0/src/measurements/mod.rs +13 -0
  101. fpm_rs-0.1.0/src/measurements/preprocessing.rs +11 -0
  102. fpm_rs-0.1.0/src/measurements/read.rs +106 -0
  103. fpm_rs-0.1.0/src/measurements/stack.rs +597 -0
  104. fpm_rs-0.1.0/src/model/crop.rs +298 -0
  105. fpm_rs-0.1.0/src/model/forward.rs +497 -0
  106. fpm_rs-0.1.0/src/model/image_plane_fpm.rs +475 -0
  107. fpm_rs-0.1.0/src/model/mod.rs +12 -0
  108. fpm_rs-0.1.0/src/model/pupil.rs +97 -0
  109. fpm_rs-0.1.0/src/model/sampling.rs +83 -0
  110. fpm_rs-0.1.0/src/reconstruction/batch.rs +18 -0
  111. fpm_rs-0.1.0/src/reconstruction/checkpoint.rs +256 -0
  112. fpm_rs-0.1.0/src/reconstruction/mod.rs +20 -0
  113. fpm_rs-0.1.0/src/reconstruction/options.rs +22 -0
  114. fpm_rs-0.1.0/src/reconstruction/problem.rs +66 -0
  115. fpm_rs-0.1.0/src/reconstruction/result.rs +337 -0
  116. fpm_rs-0.1.0/src/reconstruction/runner.rs +425 -0
  117. fpm_rs-0.1.0/src/reconstruction/schedule.rs +140 -0
  118. fpm_rs-0.1.0/src/reconstruction/state.rs +268 -0
  119. fpm_rs-0.1.0/src/simulation/camera.rs +306 -0
  120. fpm_rs-0.1.0/src/simulation/illumination_acquisition_errors.rs +36 -0
  121. fpm_rs-0.1.0/src/simulation/metrics.rs +452 -0
  122. fpm_rs-0.1.0/src/simulation/mod.rs +18 -0
  123. fpm_rs-0.1.0/src/simulation/presets.rs +87 -0
  124. fpm_rs-0.1.0/src/simulation/result.rs +25 -0
  125. fpm_rs-0.1.0/src/simulation/simulator.rs +287 -0
  126. fpm_rs-0.1.0/src/simulation/synthetic_object.rs +312 -0
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