flytekitplugins-neptune 1.13.5__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- flytekitplugins_neptune-1.13.5/PKG-INFO +23 -0
- flytekitplugins_neptune-1.13.5/README.md +36 -0
- flytekitplugins_neptune-1.13.5/flytekitplugins/neptune/__init__.py +3 -0
- flytekitplugins_neptune-1.13.5/flytekitplugins/neptune/tracking.py +119 -0
- flytekitplugins_neptune-1.13.5/flytekitplugins_neptune.egg-info/PKG-INFO +23 -0
- flytekitplugins_neptune-1.13.5/flytekitplugins_neptune.egg-info/SOURCES.txt +11 -0
- flytekitplugins_neptune-1.13.5/flytekitplugins_neptune.egg-info/dependency_links.txt +1 -0
- flytekitplugins_neptune-1.13.5/flytekitplugins_neptune.egg-info/namespace_packages.txt +1 -0
- flytekitplugins_neptune-1.13.5/flytekitplugins_neptune.egg-info/requires.txt +2 -0
- flytekitplugins_neptune-1.13.5/flytekitplugins_neptune.egg-info/top_level.txt +1 -0
- flytekitplugins_neptune-1.13.5/setup.cfg +4 -0
- flytekitplugins_neptune-1.13.5/setup.py +38 -0
- flytekitplugins_neptune-1.13.5/tests/test_neptune_init_run.py +101 -0
|
@@ -0,0 +1,23 @@
|
|
|
1
|
+
Metadata-Version: 2.1
|
|
2
|
+
Name: flytekitplugins-neptune
|
|
3
|
+
Version: 1.13.5
|
|
4
|
+
Summary: This package enables seamless use of Neptune within Flyte
|
|
5
|
+
Author: flyteorg
|
|
6
|
+
Author-email: admin@flyte.org
|
|
7
|
+
License: apache2
|
|
8
|
+
Classifier: Intended Audience :: Science/Research
|
|
9
|
+
Classifier: Intended Audience :: Developers
|
|
10
|
+
Classifier: License :: OSI Approved :: Apache Software License
|
|
11
|
+
Classifier: Programming Language :: Python :: 3.8
|
|
12
|
+
Classifier: Programming Language :: Python :: 3.9
|
|
13
|
+
Classifier: Programming Language :: Python :: 3.10
|
|
14
|
+
Classifier: Programming Language :: Python :: 3.11
|
|
15
|
+
Classifier: Programming Language :: Python :: 3.12
|
|
16
|
+
Classifier: Topic :: Scientific/Engineering
|
|
17
|
+
Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
|
|
18
|
+
Classifier: Topic :: Software Development
|
|
19
|
+
Classifier: Topic :: Software Development :: Libraries
|
|
20
|
+
Classifier: Topic :: Software Development :: Libraries :: Python Modules
|
|
21
|
+
Requires-Python: >=3.8
|
|
22
|
+
Requires-Dist: flytekit>=1.13.3
|
|
23
|
+
Requires-Dist: neptune>=1.10.4
|
|
@@ -0,0 +1,36 @@
|
|
|
1
|
+
# Flytekit Neptune Plugin
|
|
2
|
+
|
|
3
|
+
Neptune is the MLOps stack component for experiment tracking. It offers a single place to log, compare, store, and collaborate on experiments and models. This plugin integrates Flyte with Neptune by configuring links between the two platforms.
|
|
4
|
+
|
|
5
|
+
To install the plugin, run:
|
|
6
|
+
|
|
7
|
+
```bash
|
|
8
|
+
pip install flytekitplugins-neptune
|
|
9
|
+
```
|
|
10
|
+
|
|
11
|
+
Neptune requires an API key to authenticate with their platform. This Flyte plugin requires a `flytekit` `Secret` to be configured using [Flyte's Secrets manager](https://docs.flyte.org/en/latest/user_guide/productionizing/secrets.html).
|
|
12
|
+
|
|
13
|
+
```python
|
|
14
|
+
from flytekit import Secret, current_context
|
|
15
|
+
|
|
16
|
+
neptune_api_token = Secret(key="neptune_api_token", group="neptune_group")
|
|
17
|
+
|
|
18
|
+
@task
|
|
19
|
+
@neptune_init_run(project="flytekit/project", secret=neptune_api_token)
|
|
20
|
+
def neptune_task() -> bool:
|
|
21
|
+
ctx = current_context()
|
|
22
|
+
run = ctx.neptune_run
|
|
23
|
+
run["algorithm"] = "my_algorithm"
|
|
24
|
+
...
|
|
25
|
+
```
|
|
26
|
+
|
|
27
|
+
To enable linking from the Flyte side panel to Neptune, add the following to Flyte's configuration:
|
|
28
|
+
|
|
29
|
+
```yaml
|
|
30
|
+
plugins:
|
|
31
|
+
logs:
|
|
32
|
+
dynamic-log-links:
|
|
33
|
+
- neptune-run-id:
|
|
34
|
+
displayName: Neptune
|
|
35
|
+
templateUris: "{{ .taskConfig.host }}/{{ .taskConfig.project }}?query=(%60flyte%2Fexecution_id%60%3Astring%20%3D%20%22{{ .executionName }}-{{ .nodeId }}-{{ .taskRetryAttempt }}%22)&lbViewUnpacked=true"
|
|
36
|
+
```
|
|
@@ -0,0 +1,119 @@
|
|
|
1
|
+
import os
|
|
2
|
+
from functools import partial
|
|
3
|
+
from typing import Callable, Union
|
|
4
|
+
|
|
5
|
+
import neptune
|
|
6
|
+
from flytekit import Secret
|
|
7
|
+
from flytekit.core.context_manager import FlyteContext, FlyteContextManager
|
|
8
|
+
from flytekit.core.utils import ClassDecorator
|
|
9
|
+
|
|
10
|
+
NEPTUNE_RUN_VALUE = "neptune-run-id"
|
|
11
|
+
|
|
12
|
+
|
|
13
|
+
def neptune_init_run(
|
|
14
|
+
project: str,
|
|
15
|
+
secret: Union[Secret, Callable],
|
|
16
|
+
host: str = "https://app.neptune.ai",
|
|
17
|
+
**init_run_kwargs: dict,
|
|
18
|
+
):
|
|
19
|
+
"""Neptune plugin.
|
|
20
|
+
|
|
21
|
+
Args:
|
|
22
|
+
project (str): Name of the project where the run should go, in the form `workspace-name/project_name`.
|
|
23
|
+
(Required)
|
|
24
|
+
secret (Secret or Callable): Secret with your `NEPTUNE_API_KEY` or a callable that returns the API key.
|
|
25
|
+
The callable takes no arguments and returns a string. (Required)
|
|
26
|
+
host (str): URL to Neptune. Defaults to "https://app.neptune.ai".
|
|
27
|
+
**init_run_kwargs (dict):
|
|
28
|
+
"""
|
|
29
|
+
return partial(
|
|
30
|
+
_neptune_init_run_class,
|
|
31
|
+
project=project,
|
|
32
|
+
secret=secret,
|
|
33
|
+
host=host,
|
|
34
|
+
**init_run_kwargs,
|
|
35
|
+
)
|
|
36
|
+
|
|
37
|
+
|
|
38
|
+
class _neptune_init_run_class(ClassDecorator):
|
|
39
|
+
NEPTUNE_HOST_KEY = "host"
|
|
40
|
+
NEPTUNE_PROJECT_KEY = "project"
|
|
41
|
+
|
|
42
|
+
def __init__(
|
|
43
|
+
self,
|
|
44
|
+
task_function: Callable,
|
|
45
|
+
project: str,
|
|
46
|
+
secret: Union[Secret, Callable],
|
|
47
|
+
host: str = "https://app.neptune.ai",
|
|
48
|
+
**init_run_kwargs: dict,
|
|
49
|
+
):
|
|
50
|
+
"""Neptune plugin. See `neptune_init_run` for documentation on the parameters.
|
|
51
|
+
|
|
52
|
+
`neptune_init_run` is the public interface to enforce that `project` and `secret`
|
|
53
|
+
must be passed in.
|
|
54
|
+
"""
|
|
55
|
+
self.project = project
|
|
56
|
+
self.secret = secret
|
|
57
|
+
self.host = host
|
|
58
|
+
self.init_run_kwargs = init_run_kwargs
|
|
59
|
+
|
|
60
|
+
super().__init__(task_function, project=project, secret=secret, host=host, **init_run_kwargs)
|
|
61
|
+
|
|
62
|
+
def _is_local_execution(self, ctx: FlyteContext) -> bool:
|
|
63
|
+
return ctx.execution_state.is_local_execution()
|
|
64
|
+
|
|
65
|
+
def _get_secret(self, ctx: FlyteContext) -> str:
|
|
66
|
+
if isinstance(self.secret, Secret):
|
|
67
|
+
secrets = ctx.user_space_params.secrets
|
|
68
|
+
return secrets.get(key=self.secret.key, group=self.secret.group)
|
|
69
|
+
else:
|
|
70
|
+
# Callable
|
|
71
|
+
return self.secret()
|
|
72
|
+
|
|
73
|
+
def execute(self, *args, **kwargs):
|
|
74
|
+
ctx = FlyteContextManager.current_context()
|
|
75
|
+
is_local_execution = self._is_local_execution(ctx)
|
|
76
|
+
|
|
77
|
+
init_run_kwargs = {"project": self.project, **self.init_run_kwargs}
|
|
78
|
+
|
|
79
|
+
if not is_local_execution:
|
|
80
|
+
init_run_kwargs["api_token"] = self._get_secret(ctx)
|
|
81
|
+
|
|
82
|
+
run = neptune.init_run(**init_run_kwargs)
|
|
83
|
+
|
|
84
|
+
if not is_local_execution:
|
|
85
|
+
# The HOSTNAME is set to {.executionName}-{.nodeID}-{.taskRetryAttempt}
|
|
86
|
+
# If HOSTNAME is not defined, use the execution name as a fallback
|
|
87
|
+
hostname = os.environ.get("HOSTNAME", ctx.user_space_params.execution_id.name)
|
|
88
|
+
# Execution specific metadata
|
|
89
|
+
run["flyte/execution_id"] = hostname
|
|
90
|
+
run["flyte/project"] = ctx.user_space_params.execution_id.project
|
|
91
|
+
run["flyte/domain"] = ctx.user_space_params.execution_id.domain
|
|
92
|
+
run["flyte/name"] = ctx.user_space_params.execution_id.name
|
|
93
|
+
run["flyte/raw_output_prefix"] = ctx.user_space_params.raw_output_prefix
|
|
94
|
+
run["flyte/output_metadata_prefix"] = ctx.user_space_params.output_metadata_prefix
|
|
95
|
+
run["flyte/working_directory"] = ctx.user_space_params.working_directory
|
|
96
|
+
|
|
97
|
+
# Task specific metadata
|
|
98
|
+
run["flyte/task/name"] = ctx.user_space_params.task_id.name
|
|
99
|
+
run["flyte/task/project"] = ctx.user_space_params.task_id.project
|
|
100
|
+
run["flyte/task/domain"] = ctx.user_space_params.task_id.domain
|
|
101
|
+
run["flyte/task/version"] = ctx.user_space_params.task_id.version
|
|
102
|
+
|
|
103
|
+
if (execution_url := os.getenv("FLYTE_EXECUTION_URL")) is not None:
|
|
104
|
+
run["flyte/execution_url"] = execution_url
|
|
105
|
+
|
|
106
|
+
new_user_params = ctx.user_space_params.builder().add_attr("NEPTUNE_RUN", run).build()
|
|
107
|
+
with FlyteContextManager.with_context(
|
|
108
|
+
ctx.with_execution_state(ctx.execution_state.with_params(user_space_params=new_user_params))
|
|
109
|
+
):
|
|
110
|
+
output = self.task_function(*args, **kwargs)
|
|
111
|
+
run.stop()
|
|
112
|
+
return output
|
|
113
|
+
|
|
114
|
+
def get_extra_config(self):
|
|
115
|
+
return {
|
|
116
|
+
self.NEPTUNE_HOST_KEY: self.host,
|
|
117
|
+
self.NEPTUNE_PROJECT_KEY: self.project,
|
|
118
|
+
self.LINK_TYPE_KEY: NEPTUNE_RUN_VALUE,
|
|
119
|
+
}
|
|
@@ -0,0 +1,23 @@
|
|
|
1
|
+
Metadata-Version: 2.1
|
|
2
|
+
Name: flytekitplugins-neptune
|
|
3
|
+
Version: 1.13.5
|
|
4
|
+
Summary: This package enables seamless use of Neptune within Flyte
|
|
5
|
+
Author: flyteorg
|
|
6
|
+
Author-email: admin@flyte.org
|
|
7
|
+
License: apache2
|
|
8
|
+
Classifier: Intended Audience :: Science/Research
|
|
9
|
+
Classifier: Intended Audience :: Developers
|
|
10
|
+
Classifier: License :: OSI Approved :: Apache Software License
|
|
11
|
+
Classifier: Programming Language :: Python :: 3.8
|
|
12
|
+
Classifier: Programming Language :: Python :: 3.9
|
|
13
|
+
Classifier: Programming Language :: Python :: 3.10
|
|
14
|
+
Classifier: Programming Language :: Python :: 3.11
|
|
15
|
+
Classifier: Programming Language :: Python :: 3.12
|
|
16
|
+
Classifier: Topic :: Scientific/Engineering
|
|
17
|
+
Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
|
|
18
|
+
Classifier: Topic :: Software Development
|
|
19
|
+
Classifier: Topic :: Software Development :: Libraries
|
|
20
|
+
Classifier: Topic :: Software Development :: Libraries :: Python Modules
|
|
21
|
+
Requires-Python: >=3.8
|
|
22
|
+
Requires-Dist: flytekit>=1.13.3
|
|
23
|
+
Requires-Dist: neptune>=1.10.4
|
|
@@ -0,0 +1,11 @@
|
|
|
1
|
+
README.md
|
|
2
|
+
setup.py
|
|
3
|
+
flytekitplugins/neptune/__init__.py
|
|
4
|
+
flytekitplugins/neptune/tracking.py
|
|
5
|
+
flytekitplugins_neptune.egg-info/PKG-INFO
|
|
6
|
+
flytekitplugins_neptune.egg-info/SOURCES.txt
|
|
7
|
+
flytekitplugins_neptune.egg-info/dependency_links.txt
|
|
8
|
+
flytekitplugins_neptune.egg-info/namespace_packages.txt
|
|
9
|
+
flytekitplugins_neptune.egg-info/requires.txt
|
|
10
|
+
flytekitplugins_neptune.egg-info/top_level.txt
|
|
11
|
+
tests/test_neptune_init_run.py
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
flytekitplugins
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
flytekitplugins
|
|
@@ -0,0 +1,38 @@
|
|
|
1
|
+
from setuptools import setup
|
|
2
|
+
|
|
3
|
+
PLUGIN_NAME = "neptune"
|
|
4
|
+
|
|
5
|
+
|
|
6
|
+
microlib_name = f"flytekitplugins-{PLUGIN_NAME}"
|
|
7
|
+
|
|
8
|
+
plugin_requires = ["flytekit>=1.13.3", "neptune>=1.10.4"]
|
|
9
|
+
|
|
10
|
+
__version__ = "1.13.5"
|
|
11
|
+
|
|
12
|
+
setup(
|
|
13
|
+
name=microlib_name,
|
|
14
|
+
version=__version__,
|
|
15
|
+
author="flyteorg",
|
|
16
|
+
author_email="admin@flyte.org",
|
|
17
|
+
description="This package enables seamless use of Neptune within Flyte",
|
|
18
|
+
namespace_packages=["flytekitplugins"],
|
|
19
|
+
packages=[f"flytekitplugins.{PLUGIN_NAME}"],
|
|
20
|
+
install_requires=plugin_requires,
|
|
21
|
+
license="apache2",
|
|
22
|
+
python_requires=">=3.8",
|
|
23
|
+
classifiers=[
|
|
24
|
+
"Intended Audience :: Science/Research",
|
|
25
|
+
"Intended Audience :: Developers",
|
|
26
|
+
"License :: OSI Approved :: Apache Software License",
|
|
27
|
+
"Programming Language :: Python :: 3.8",
|
|
28
|
+
"Programming Language :: Python :: 3.9",
|
|
29
|
+
"Programming Language :: Python :: 3.10",
|
|
30
|
+
"Programming Language :: Python :: 3.11",
|
|
31
|
+
"Programming Language :: Python :: 3.12",
|
|
32
|
+
"Topic :: Scientific/Engineering",
|
|
33
|
+
"Topic :: Scientific/Engineering :: Artificial Intelligence",
|
|
34
|
+
"Topic :: Software Development",
|
|
35
|
+
"Topic :: Software Development :: Libraries",
|
|
36
|
+
"Topic :: Software Development :: Libraries :: Python Modules",
|
|
37
|
+
],
|
|
38
|
+
)
|
|
@@ -0,0 +1,101 @@
|
|
|
1
|
+
from unittest.mock import patch, Mock
|
|
2
|
+
|
|
3
|
+
from flytekit import Secret, task, current_context
|
|
4
|
+
from flytekit.core.context_manager import FlyteContextManager
|
|
5
|
+
from flytekitplugins.neptune import neptune_init_run
|
|
6
|
+
from flytekitplugins.neptune.tracking import _neptune_init_run_class
|
|
7
|
+
|
|
8
|
+
neptune_api_token = Secret(key="neptune_api_token", group="neptune_group")
|
|
9
|
+
|
|
10
|
+
|
|
11
|
+
def test_get_extra_config():
|
|
12
|
+
|
|
13
|
+
@neptune_init_run(project="flytekit/project", secret=neptune_api_token, tags=["my-tag"])
|
|
14
|
+
def my_task() -> bool:
|
|
15
|
+
...
|
|
16
|
+
|
|
17
|
+
config = my_task.get_extra_config()
|
|
18
|
+
assert config[my_task.NEPTUNE_HOST_KEY] == "https://app.neptune.ai"
|
|
19
|
+
assert config[my_task.NEPTUNE_PROJECT_KEY] == "flytekit/project"
|
|
20
|
+
|
|
21
|
+
|
|
22
|
+
@task
|
|
23
|
+
@neptune_init_run(project="flytekit/project", secret=neptune_api_token, tags=["my-tag"])
|
|
24
|
+
def neptune_task() -> bool:
|
|
25
|
+
ctx = current_context()
|
|
26
|
+
return ctx.neptune_run is not None
|
|
27
|
+
|
|
28
|
+
|
|
29
|
+
@patch("flytekitplugins.neptune.tracking.neptune")
|
|
30
|
+
def test_local_project_and_init_run_kwargs(neptune_mock):
|
|
31
|
+
neptune_exists = neptune_task()
|
|
32
|
+
assert neptune_exists
|
|
33
|
+
|
|
34
|
+
neptune_mock.init_run.assert_called_with(
|
|
35
|
+
project="flytekit/project", tags=["my-tag"]
|
|
36
|
+
)
|
|
37
|
+
|
|
38
|
+
|
|
39
|
+
class RunObjectMock(dict):
|
|
40
|
+
def __init__(self):
|
|
41
|
+
self._stop_called = False
|
|
42
|
+
|
|
43
|
+
def stop(self):
|
|
44
|
+
self._stop_called = True
|
|
45
|
+
|
|
46
|
+
|
|
47
|
+
@patch.object(_neptune_init_run_class, "_get_secret")
|
|
48
|
+
@patch.object(_neptune_init_run_class, "_is_local_execution")
|
|
49
|
+
@patch("flytekitplugins.neptune.tracking.neptune")
|
|
50
|
+
def test_remote_project_and_init_run_kwargs(
|
|
51
|
+
neptune_mock,
|
|
52
|
+
mock_is_local_execution,
|
|
53
|
+
mock_get_secret,
|
|
54
|
+
monkeypatch,
|
|
55
|
+
):
|
|
56
|
+
# Pretend that the execution is remote
|
|
57
|
+
mock_is_local_execution.return_value = False
|
|
58
|
+
api_token = "this-is-my-api-token"
|
|
59
|
+
mock_get_secret.return_value = api_token
|
|
60
|
+
|
|
61
|
+
host_name = "ff59abade1e7f4758baf-mainmytask-0"
|
|
62
|
+
execution_url = "https://my-host.com/execution_url"
|
|
63
|
+
monkeypatch.setenv("HOSTNAME", host_name)
|
|
64
|
+
monkeypatch.setenv("FLYTE_EXECUTION_URL", execution_url)
|
|
65
|
+
|
|
66
|
+
run_mock = RunObjectMock()
|
|
67
|
+
init_run_mock = Mock(return_value=run_mock)
|
|
68
|
+
neptune_mock.init_run = init_run_mock
|
|
69
|
+
|
|
70
|
+
neptune_task()
|
|
71
|
+
|
|
72
|
+
init_run_mock.assert_called_with(project="flytekit/project", tags=["my-tag"], api_token=api_token)
|
|
73
|
+
assert run_mock["flyte/execution_id"] == host_name
|
|
74
|
+
assert run_mock["flyte/execution_url"] == execution_url
|
|
75
|
+
|
|
76
|
+
|
|
77
|
+
def test_get_secret_callable():
|
|
78
|
+
def get_secret():
|
|
79
|
+
return "abc-123"
|
|
80
|
+
|
|
81
|
+
@neptune_init_run(project="flytekit/project", secret=get_secret, tags=["my-tag"])
|
|
82
|
+
def my_task():
|
|
83
|
+
pass
|
|
84
|
+
|
|
85
|
+
ctx_mock = Mock()
|
|
86
|
+
assert my_task._get_secret(ctx_mock) == "abc-123"
|
|
87
|
+
|
|
88
|
+
|
|
89
|
+
def test_get_secret_object():
|
|
90
|
+
secret_obj = Secret(key="my_key", group="my_group")
|
|
91
|
+
|
|
92
|
+
@neptune_init_run(project="flytekit/project", secret=secret_obj, tags=["my-tag"])
|
|
93
|
+
def my_task():
|
|
94
|
+
pass
|
|
95
|
+
|
|
96
|
+
get_secret_mock = Mock(return_value="my-secret-value")
|
|
97
|
+
ctx_mock = Mock()
|
|
98
|
+
ctx_mock.user_space_params.secrets.get = get_secret_mock
|
|
99
|
+
|
|
100
|
+
assert my_task._get_secret(ctx_mock) == "my-secret-value"
|
|
101
|
+
get_secret_mock.assert_called_with(key="my_key", group="my_group")
|