flowcept 0.9.9__tar.gz → 0.9.11__tar.gz

{flowcept-0.9.9 → flowcept-0.9.11}/.gitignore

@@ -10,6 +10,7 @@
 **/*tensorboard_events*
 **/*.DS_Store*
 **/*.log
+**/*.jsonl
 **/*.pth
 **/*ipynb_checkpoints*
 **/*flowcept_lmdb

{flowcept-0.9.9 → flowcept-0.9.11}/Makefile

@@ -45,6 +45,7 @@ clean:
 	@find . -type d -name "*output_data*" -exec sh -c 'rm -rf "$$@" 2>/dev/null || true' sh {} +
 	@find . -type f -name "*nohup*" -exec sh -c 'rm -f "$$@" 2>/dev/null || true' sh {} +
 	@sh -c 'sphinx-build -M clean docs docs/_build > /dev/null 2>&1 || true'
+	@sh -c 'rm -f docs/generated/* 2>/dev/null || true'
 
 # Build the HTML documentation using Sphinx
 .PHONY: docs

{flowcept-0.9.9 → flowcept-0.9.11}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: flowcept
-Version: 0.9.9
+Version: 0.9.11
 Summary: Capture and query workflow provenance data using data observability
 Author: Oak Ridge National Laboratory
 License-Expression: MIT
@@ -56,6 +56,7 @@ Requires-Dist: tensorflow; extra == 'all'
 Requires-Dist: tomli; extra == 'all'
 Requires-Dist: watchdog; extra == 'all'
 Provides-Extra: analytics
+Requires-Dist: matplotlib; extra == 'analytics'
 Requires-Dist: plotly; extra == 'analytics'
 Requires-Dist: scipy; extra == 'analytics'
 Requires-Dist: seaborn; extra == 'analytics'
@@ -219,7 +220,7 @@ def main():
 if __name__ == "__main__":
     main()
 
-    prov_messages = Flowcept.read_messages_file()
+    prov_messages = Flowcept.read_buffer_file()
     assert len(prov_messages) == 2
     print(json.dumps(prov_messages, indent=2))
 ```

{flowcept-0.9.9 → flowcept-0.9.11}/README.md

@@ -71,7 +71,7 @@ def main():
 if __name__ == "__main__":
     main()
 
-    prov_messages = Flowcept.read_messages_file()
+    prov_messages = Flowcept.read_buffer_file()
     assert len(prov_messages) == 2
     print(json.dumps(prov_messages, indent=2))
 ```

{flowcept-0.9.9 → flowcept-0.9.11}/docs/api-reference.rst

@@ -1,27 +1,17 @@
 API Reference
 =============
 
-.. autosummary::
-   :toctree: generated/
-   :recursive:
-
-   flowcept.Flowcept
-   flowcept.flowcept_api.db_api.DBAPI
-   flowcept.TaskObject
-   flowcept.WorkflowObject
-   flowcept.FlowceptTask
-   flowcept.FlowceptLoop
-   flowcept.FlowceptLightweightLoop
 
 Main Flowcept Object
 --------------------
 
+See also: `Flowcept object <https://flowcept.readthedocs.io/en/latest/prov_capture.html>`_ in provenance capture methods.
+
 .. autoclass:: flowcept.Flowcept
    :members:
    :special-members: __init__
    :exclude-members: __weakref__, __dict__, __module__
-
-
+   :noindex:
 
 Flowcept.db: Querying the Database
 ----------------------------------
@@ -49,18 +39,20 @@ Typical usage:
    :members:
    :undoc-members:
    :show-inheritance:
-
+   :noindex:
 
 Main Message Objects
 ---------------------
 
 .. autoclass:: flowcept.TaskObject
    :members:
+   :noindex:
 
 .. autoclass:: flowcept.WorkflowObject
    :members:
+   :noindex:
 
-FlowceptTask object
+FlowceptTask
 -------------------
 
 .. autoclass:: flowcept.FlowceptTask
@@ -68,22 +60,28 @@ FlowceptTask object
    :special-members: __init__
    :undoc-members:
    :show-inheritance:
+   :noindex:
 
-FlowceptLoop object
+FlowceptLoop
 -------------------
 
-.. autoclass:: flowcept.FlowceptLoop
+Can be imported via ``from flowcept import FlowceptLoop``
+
+.. autoclass:: flowcept.instrumentation.flowcept_loop.FlowceptLoop
    :members:
    :special-members: __init__
    :undoc-members:
    :show-inheritance:
+   :noindex:
 
-
-FlowceptLightweightLoop object
+FlowceptLightweightLoop
 ------------------------------
 
-.. autoclass:: flowcept.FlowceptLightweightLoop
+Can be imported via ``from flowcept import FlowceptLightweightLoop``
+
+.. autoclass:: flowcept.instrumentation.flowcept_loop.FlowceptLightweightLoop
    :members:
    :special-members: __init__
    :undoc-members:
-   :show-inheritance:
+   :show-inheritance:
+   :noindex:

{flowcept-0.9.9 → flowcept-0.9.11}/docs/architecture.rst

@@ -8,9 +8,7 @@ Flowcept Architecture
 Overview
 --------
 
-Rather than designing a new provenance system from scratch, Flowcept builds on a **reference architecture**
-(Figure below) that follows established distributed design principles and is extensible to support
-LLM-based provenance agents.  
+Flowcept follows established distributed design principles and is extensible to support multiple MQs as backends, multiple database models (e.g., Document, Relational, Graph), and LLM-based agents.
 This provides a flexible, loosely coupled framework that scales from small centralized workflows
 to large HPC workflows across the **Edge–Cloud–HPC (ECH)** continuum.
 
@@ -19,8 +17,6 @@ to large HPC workflows across the **Edge–Cloud–HPC (ECH)** continuum.
    :align: center
    :width: 100%
 
-   Reference architecture for distributed workflow provenance with a provenance AI agent.
-
 Capture Mechanisms
 ------------------
 
@@ -59,7 +55,7 @@ They can store provenance into different backends, depending on performance and
 
 - **MongoDB** → efficient bulk writes and flexible aggregation queries.  
 - **LMDB** → lightweight key–value store, optimized for high-frequency inserts.  
-- **Neo4j** → graph database, enabling graph traversal and relationship queries.
+- **Custom** → Other storage mechanisms can be implemented by following Flowcept's Base Consumer class. See `here <https://flowcept.readthedocs.io/en/latest/prov_storage.html#provenance-consumer>`_.
 
 Access and Querying
 -------------------
@@ -70,6 +66,8 @@ Users can access provenance data through multiple interfaces:
 - **Grafana dashboards** for monitoring and visualization  
 - **Natural language queries** through Flowcept’s LLM-powered agent (introduced in this work)
 
+See more about `querying <https://flowcept.readthedocs.io/en/latest/prov_query.html>`_.
+
 Deployment Flexibility
 ----------------------
 

{flowcept-0.9.9 → flowcept-0.9.11}/docs/conf.py

@@ -13,8 +13,12 @@ author = "Oak Ridge National Lab"
 # -- General configuration ---------------------------------------------------
 # https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
 
-extensions = ["sphinx.ext.autodoc"]
+extensions = [
+    "sphinx.ext.autodoc",
+    "sphinx.ext.autosummary",
+]
 
+autosummary_generate = True
 templates_path = ["_templates"]
 exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]
 

flowcept-0.9.11/docs/img/PROV-AGENT.svg

@@ -0,0 +1,226 @@
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flowcept-0.9.11/docs/large_data.rst

@@ -0,0 +1,20 @@
+# Handling Large Data
+
+As a provenance-based tool, Flowcept leverages provenance data (typically seen as metadata) to keep track of data, including large datasets or data files, workflows, and ML models.
+
+There are various ways to handle large data in Flowcept
+
+## Sending large blob data as messages
+
+### Sending as files
+
+Importance of MimeType and the custom_metadata for files 
+
+## Managing blob data
+
+## Managing PyTorch models
+
+
+
+
+