fibernet 4.2.0__tar.gz → 4.3.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1385) hide show
  1. fibernet-4.3.0/.gitattributes +86 -0
  2. fibernet-4.3.0/CHANGELOG.md +443 -0
  3. fibernet-4.3.0/FiberScope/LICENSE +21 -0
  4. fibernet-4.3.0/FiberScope/THIRD_PARTY_NOTICES.md +11 -0
  5. fibernet-4.3.0/FiberScope/assets/obj/demo_pyramid.obj +229 -0
  6. fibernet-4.3.0/LICENSE +21 -0
  7. fibernet-4.3.0/MANIFEST.in +51 -0
  8. fibernet-4.3.0/PKG-INFO +200 -0
  9. fibernet-4.3.0/PYPI_README.md +105 -0
  10. fibernet-4.3.0/README.md +2968 -0
  11. fibernet-4.3.0/README_CN.md +1474 -0
  12. fibernet-4.3.0/benchmarks/electrothermal_two_node.py +224 -0
  13. fibernet-4.3.0/docs/AI_CYCLE_SELECTOR_2026-09-24.md +24 -0
  14. fibernet-4.3.0/docs/ANALYSIS_OPTIONAL_DEPENDENCIES.md +20 -0
  15. fibernet-4.3.0/docs/API_LAYERS.md +303 -0
  16. fibernet-4.3.0/docs/APP_CELL_PROVIDER_ISOLATION.md +39 -0
  17. fibernet-4.3.0/docs/ATTRIBUTIONS.md +99 -0
  18. fibernet-4.3.0/docs/CAPABILITY_AUDIT_2026-09-24.md +51 -0
  19. fibernet-4.3.0/docs/CONNECTIVITY_REPAIR_PROVENANCE.md +82 -0
  20. fibernet-4.3.0/docs/CONSTRAINED_CYCLE_INTERVENTION_2026-09-24.md +28 -0
  21. fibernet-4.3.0/docs/DEFORMED_TRANSPORT_PREPARATION.md +158 -0
  22. fibernet-4.3.0/docs/DYNAMIC_AXIAL_VISCOELASTICITY.md +166 -0
  23. fibernet-4.3.0/docs/EARLY_RECRUITMENT_PREDICTION_2026-09-24.md +30 -0
  24. fibernet-4.3.0/docs/EXPERIMENTAL_ELECTROTHERMAL.md +264 -0
  25. fibernet-4.3.0/docs/EXPERIMENTAL_THERMOELASTIC.md +114 -0
  26. fibernet-4.3.0/docs/FEATURE_AVAILABILITY.md +200 -0
  27. fibernet-4.3.0/docs/FIBERSCOPE_GENERATED_INPUT_CACHE.md +45 -0
  28. fibernet-4.3.0/docs/FRACTURE_METHODS.md +37 -0
  29. fibernet-4.3.0/docs/GRAPH_TRAINING_CONTRACT.md +399 -0
  30. fibernet-4.3.0/docs/HOMEPAGE_EXAMPLE_NOTES.md +181 -0
  31. fibernet-4.3.0/docs/HOMEPAGE_EXAMPLE_SCOPE.md +25 -0
  32. fibernet-4.3.0/docs/HOMEPAGE_OVERVIEW_MEDIA.md +35 -0
  33. fibernet-4.3.0/docs/INDEPENDENT_FEM_CYCLE_INTERVENTION_2026-09-24.md +24 -0
  34. fibernet-4.3.0/docs/INTEGRATION_REPO_MAP.md +14 -0
  35. fibernet-4.3.0/docs/ISOLATED_TAICHI_CPU.md +87 -0
  36. fibernet-4.3.0/docs/LAMMPS_FULL_HISTORY.md +54 -0
  37. fibernet-4.3.0/docs/LEGACY_ANALYSIS_SUMMARY.md +31 -0
  38. fibernet-4.3.0/docs/LEGACY_FEA_EXPORT.md +55 -0
  39. fibernet-4.3.0/docs/LEGACY_FLOW_MIGRATION.md +68 -0
  40. fibernet-4.3.0/docs/LEGACY_LAMMPS_EXPORT.md +54 -0
  41. fibernet-4.3.0/docs/LEGACY_ML_FEATURE_BOUNDARY.md +90 -0
  42. fibernet-4.3.0/docs/MANUFACTURING_GRAPH_MAPPING.md +134 -0
  43. fibernet-4.3.0/docs/MEDIA_GALLERY.md +124 -0
  44. fibernet-4.3.0/docs/METHODS_3D_GENERATION_PARAMETERS.md +94 -0
  45. fibernet-4.3.0/docs/METHODS_BEAM_FEM_CONTRACT.md +175 -0
  46. fibernet-4.3.0/docs/METHODS_CURVE_INVERSE_UNIFIED.md +9 -0
  47. fibernet-4.3.0/docs/METHODS_CUSTOM_CELL_UNIFIED.md +15 -0
  48. fibernet-4.3.0/docs/METHODS_MANUFACTURING_UNIFIED.md +54 -0
  49. fibernet-4.3.0/docs/METHODS_PHYSICAL_DATASET_UNIFIED.md +33 -0
  50. fibernet-4.3.0/docs/METHODS_PHYSICAL_LEARNING_UNIFIED.md +17 -0
  51. fibernet-4.3.0/docs/METHODS_REDUCED_SOLVER_UNIFIED.md +53 -0
  52. fibernet-4.3.0/docs/METHODS_SNAPSHOT_FEATURES_UNIFIED.md +9 -0
  53. fibernet-4.3.0/docs/METHODS_SPECTRUM.md +15 -0
  54. fibernet-4.3.0/docs/METHODS_TENSILE_RECRUITMENT.md +19 -0
  55. fibernet-4.3.0/docs/MULTISTROKE_MANUFACTURING.md +199 -0
  56. fibernet-4.3.0/docs/NATIVE_AXIAL_MASS_STATE.md +108 -0
  57. fibernet-4.3.0/docs/ONE_WAY_JOULE_HEATING.md +143 -0
  58. fibernet-4.3.0/docs/PAPER_POSITIONING_2026-09-24.md +62 -0
  59. fibernet-4.3.0/docs/PARAMETER_INPUT_CONTRACTS.md +29 -0
  60. fibernet-4.3.0/docs/PERCOLATION_CYCLE_2026-09-24.md +24 -0
  61. fibernet-4.3.0/docs/PERCOLATION_MATCHED_2026-09-24.md +26 -0
  62. fibernet-4.3.0/docs/PERCOLATION_PILOT_2026-09-24.md +29 -0
  63. fibernet-4.3.0/docs/PHYSICAL_FEATURE_SCHEMA.md +35 -0
  64. fibernet-4.3.0/docs/R10_GEOMETRY_INTERCHANGE.md +103 -0
  65. fibernet-4.3.0/docs/README_VNEXT.md +186 -0
  66. fibernet-4.3.0/docs/RECRUITMENT_SENSITIVITY_2026-09-24.md +23 -0
  67. fibernet-4.3.0/docs/RELEASE_4_2_0.md +16 -0
  68. fibernet-4.3.0/docs/RESULT_IDENTITY_AND_CHANNELS.md +63 -0
  69. fibernet-4.3.0/docs/RL_COMPATIBILITY.md +36 -0
  70. fibernet-4.3.0/docs/SAVED_ELECTROTHERMAL_MECHANICS.md +201 -0
  71. fibernet-4.3.0/docs/SAVED_THERMAL_MECHANICS.md +113 -0
  72. fibernet-4.3.0/docs/STABLE_NODAL_CONTROLS.md +75 -0
  73. fibernet-4.3.0/docs/STANDARD_OCTET_FCC_V1.md +38 -0
  74. fibernet-4.3.0/docs/STRUCTURE_GRAPH_SERIALIZATION.md +31 -0
  75. fibernet-4.3.0/docs/TAICHI_API_DISPATCH.md +139 -0
  76. fibernet-4.3.0/docs/TAICHI_DASHPOT_STAGING.md +43 -0
  77. fibernet-4.3.0/docs/TAICHI_ELASTIC_LAW_COMPATIBILITY.md +51 -0
  78. fibernet-4.3.0/docs/TAICHI_GEOMETRY_POLICY.md +87 -0
  79. fibernet-4.3.0/docs/TAICHI_PUBLIC_BACKPORT_NOTES.md +27 -0
  80. fibernet-4.3.0/docs/THERMOELASTIC_NETWORK.md +136 -0
  81. fibernet-4.3.0/docs/VISCOELASTIC_NETWORK.md +146 -0
  82. fibernet-4.3.0/docs/api/index.rst +98 -0
  83. fibernet-4.3.0/docs/api/navigation.md +39 -0
  84. fibernet-4.3.0/docs/architecture/README.md +44 -0
  85. fibernet-4.3.0/docs/architecture/SIMRESULT_SAVE_CONTRACT.md +30 -0
  86. fibernet-4.3.0/docs/architecture/batch-resume-binding-usage.md +134 -0
  87. fibernet-4.3.0/docs/architecture/beam-recovery-impact.md +140 -0
  88. fibernet-4.3.0/docs/architecture/csv-predictor-workflow.md +87 -0
  89. fibernet-4.3.0/docs/architecture/dataset-load-validation-usage.md +115 -0
  90. fibernet-4.3.0/docs/architecture/dataset-persistence-usage.md +156 -0
  91. fibernet-4.3.0/docs/architecture/dataset-selected-value-contract.md +57 -0
  92. fibernet-4.3.0/docs/architecture/dataset-source-group-split.md +95 -0
  93. fibernet-4.3.0/docs/architecture/fem-3d-reaction-contract.md +125 -0
  94. fibernet-4.3.0/docs/architecture/fem-force-shape-contract.md +65 -0
  95. fibernet-4.3.0/docs/architecture/fem-linear-diagnostics-usage.md +88 -0
  96. fibernet-4.3.0/docs/architecture/fiber-network-projection.md +173 -0
  97. fibernet-4.3.0/docs/architecture/geometry-paths.md +93 -0
  98. fibernet-4.3.0/docs/architecture/gnn-checked-prediction-usage.md +149 -0
  99. fibernet-4.3.0/docs/architecture/gnn-graph-batch-usage.md +148 -0
  100. fibernet-4.3.0/docs/architecture/gnn-group-training-usage.md +179 -0
  101. fibernet-4.3.0/docs/architecture/graph-data-usage.md +297 -0
  102. fibernet-4.3.0/docs/architecture/linear-fem-quickstart.md +161 -0
  103. fibernet-4.3.0/docs/architecture/material-consumption-contract.md +79 -0
  104. fibernet-4.3.0/docs/architecture/ml-gan-pinn-diffusion-optional-torch.md +17 -0
  105. fibernet-4.3.0/docs/architecture/ml-metric-usage.md +112 -0
  106. fibernet-4.3.0/docs/architecture/ml-owner-optional-torch.md +13 -0
  107. fibernet-4.3.0/docs/architecture/ml-training-optional-torch.md +43 -0
  108. fibernet-4.3.0/docs/architecture/ml-uncertainty-inference-contract.md +74 -0
  109. fibernet-4.3.0/docs/architecture/model-artifact-persistence-usage.md +167 -0
  110. fibernet-4.3.0/docs/architecture/named-inference-usage.md +66 -0
  111. fibernet-4.3.0/docs/architecture/native-dataset-training-usage.md +192 -0
  112. fibernet-4.3.0/docs/architecture/raw-array-identity-migration.md +75 -0
  113. fibernet-4.3.0/docs/architecture/reference-research-journey.md +135 -0
  114. fibernet-4.3.0/docs/architecture/result-identity-contract.md +93 -0
  115. fibernet-4.3.0/docs/architecture/rl-capability-preflight.md +45 -0
  116. fibernet-4.3.0/docs/architecture/rl-evaluation-isolation.md +136 -0
  117. fibernet-4.3.0/docs/architecture/snapshot-identity-contract.md +51 -0
  118. fibernet-4.3.0/docs/architecture/spectrum-metrics.md +102 -0
  119. fibernet-4.3.0/docs/architecture/taichi-lifecycle-audit.md +56 -0
  120. fibernet-4.3.0/docs/architecture/topology-metrics.md +82 -0
  121. fibernet-4.3.0/docs/architecture/training-column-selection-usage.md +100 -0
  122. fibernet-4.3.0/docs/architecture/xgboost-scalar-usage.md +86 -0
  123. fibernet-4.3.0/docs/archived_ge_results.md +84 -0
  124. fibernet-4.3.0/docs/batch_input_validation.md +17 -0
  125. fibernet-4.3.0/docs/changelog.rst +86 -0
  126. fibernet-4.3.0/docs/conf.py +53 -0
  127. fibernet-4.3.0/docs/configuration_saving.md +7 -0
  128. fibernet-4.3.0/docs/contributing.rst +119 -0
  129. fibernet-4.3.0/docs/discrete_energy_ledger.md +106 -0
  130. fibernet-4.3.0/docs/fem_implementation.md +333 -0
  131. fibernet-4.3.0/docs/generators/materials-and-endpoints.md +33 -0
  132. fibernet-4.3.0/docs/getting_started.rst +105 -0
  133. fibernet-4.3.0/docs/graph_displacements.md +19 -0
  134. fibernet-4.3.0/docs/graph_endpoint_ids.md +18 -0
  135. fibernet-4.3.0/docs/graph_mutator_ids.md +18 -0
  136. fibernet-4.3.0/docs/index.rst +77 -0
  137. fibernet-4.3.0/docs/integrations/AFFINE_MEMBER_IDENTITY.md +55 -0
  138. fibernet-4.3.0/docs/integrations/DATASET_GENERATE_RESUME.md +83 -0
  139. fibernet-4.3.0/docs/integrations/EDGE_GINE.md +94 -0
  140. fibernet-4.3.0/docs/integrations/EXPORT_FILE_SAFETY.md +13 -0
  141. fibernet-4.3.0/docs/integrations/EXUDYN_CONTACT.md +108 -0
  142. fibernet-4.3.0/docs/integrations/LAMMPS_CG_CROSSLINKED_NETWORK.md +92 -0
  143. fibernet-4.3.0/docs/integrations/LAMMPS_CG_FIBER_ONLY.md +178 -0
  144. fibernet-4.3.0/docs/integrations/LAMMPS_HARMONIC_CLI.md +234 -0
  145. fibernet-4.3.0/docs/integrations/LAMMPS_LICENSE_NOTICE.md +3 -0
  146. fibernet-4.3.0/docs/integrations/LAMMPS_PLANNING.md +113 -0
  147. fibernet-4.3.0/docs/integrations/LINEAR_TRANSPORT_USAGE.md +146 -0
  148. fibernet-4.3.0/docs/integrations/MERGE_RIGHT_OWNERSHIP.md +38 -0
  149. fibernet-4.3.0/docs/integrations/MESHIO_USAGE.md +125 -0
  150. fibernet-4.3.0/docs/integrations/NETWORKX_LOSSLESS_USAGE.md +131 -0
  151. fibernet-4.3.0/docs/integrations/PORTABLE_GENERATION_CI.md +68 -0
  152. fibernet-4.3.0/docs/integrations/THERMAL_MIGRATION.md +29 -0
  153. fibernet-4.3.0/docs/integrations/TRANSIENT_THERMAL_USAGE.md +55 -0
  154. fibernet-4.3.0/docs/integrations/UNIT_DESCRIPTORS.md +114 -0
  155. fibernet-4.3.0/docs/integrations/UNIT_REGISTRATION.md +19 -0
  156. fibernet-4.3.0/docs/integrations/VORONOI_OWNED_BRIDGE.md +39 -0
  157. fibernet-4.3.0/docs/integrations/build_transport_demo_data.py +102 -0
  158. fibernet-4.3.0/docs/integrations/thermal_frozen_contract.json +105 -0
  159. fibernet-4.3.0/docs/integrations/transport_pilot_fixture.json +14 -0
  160. fibernet-4.3.0/docs/integrations/transport_roundoff_contract_v2.json +42 -0
  161. fibernet-4.3.0/docs/io/hdf5.md +79 -0
  162. fibernet-4.3.0/docs/legacy_lammps_compatibility.md +13 -0
  163. fibernet-4.3.0/docs/legacy_network_units.md +66 -0
  164. fibernet-4.3.0/docs/legacy_networkx_projection.md +58 -0
  165. fibernet-4.3.0/docs/media/network_workflow_hero_poster.png +0 -0
  166. fibernet-4.3.0/docs/media/new/README.md +11 -0
  167. fibernet-4.3.0/docs/media/new/backends/README.md +7 -0
  168. fibernet-4.3.0/docs/media/new/backends/data/SAVED_BACKEND_DYNAMICS.md +12 -0
  169. fibernet-4.3.0/docs/media/new/backends/lammps_saved_dynamics.png +0 -0
  170. fibernet-4.3.0/docs/media/new/backends/render.py +62 -0
  171. fibernet-4.3.0/docs/media/new/backends/taichi_saved_dynamics.png +0 -0
  172. fibernet-4.3.0/docs/media/new/fracture/README.md +25 -0
  173. fibernet-4.3.0/docs/media/new/fracture/render.py +81 -0
  174. fibernet-4.3.0/docs/media/new/learning/README.md +19 -0
  175. fibernet-4.3.0/docs/media/new/learning/media/gine_training_frame_00.png +0 -0
  176. fibernet-4.3.0/docs/media/new/learning/media/gine_training_frame_10.png +0 -0
  177. fibernet-4.3.0/docs/media/new/learning/media/gine_training_frame_23.png +0 -0
  178. fibernet-4.3.0/docs/media/new/learning/media/rl_environment_stage_0.png +0 -0
  179. fibernet-4.3.0/docs/media/new/learning/media/rl_environment_stage_1.png +0 -0
  180. fibernet-4.3.0/docs/media/new/learning/media/rl_environment_stage_2.png +0 -0
  181. fibernet-4.3.0/docs/media/new/learning/render_gine_history.py +34 -0
  182. fibernet-4.3.0/docs/media/new/learning/render_rl_step.py +29 -0
  183. fibernet-4.3.0/docs/media/new/thermal/README.md +7 -0
  184. fibernet-4.3.0/docs/media/new/thermal/check.py +31 -0
  185. fibernet-4.3.0/docs/media/new/thermal/data/README.md +41 -0
  186. fibernet-4.3.0/docs/media/new/thermal/render.py +73 -0
  187. fibernet-4.3.0/docs/media/new/viscoelastic/README.md +17 -0
  188. fibernet-4.3.0/docs/media/new/viscoelastic/render_recovered_dynamics.py +75 -0
  189. fibernet-4.3.0/docs/media/new/viscoelastic/viscoelastic_network_contact_sheet.png +0 -0
  190. fibernet-4.3.0/docs/native_json_input.md +22 -0
  191. fibernet-4.3.0/docs/optional_plot_imports.md +39 -0
  192. fibernet-4.3.0/docs/quickstart.rst +127 -0
  193. fibernet-4.3.0/docs/solid_validation.md +68 -0
  194. fibernet-4.3.0/docs/state_observer.md +27 -0
  195. fibernet-4.3.0/docs/structure_graph_discretization.md +34 -0
  196. fibernet-4.3.0/docs/tutorials.rst +71 -0
  197. fibernet-4.3.0/docs/wiki/Feature-Extraction.md +36 -0
  198. fibernet-4.3.0/docs/wiki/Framework-Overview.md +75 -0
  199. fibernet-4.3.0/docs/wiki/Home.md +30 -0
  200. fibernet-4.3.0/docs/wiki/Installation.md +60 -0
  201. fibernet-4.3.0/docs/wiki/Machine-Learning.md +31 -0
  202. fibernet-4.3.0/docs/wiki/Reinforcement-Learning.md +43 -0
  203. fibernet-4.3.0/docs/wiki/Simulation-Engine.md +40 -0
  204. fibernet-4.3.0/docs/wiki/Unit-Types.md +77 -0
  205. fibernet-4.3.0/docs/wiki/_Footer.md +2 -0
  206. fibernet-4.3.0/docs/wiki/_Sidebar.md +15 -0
  207. fibernet-4.3.0/docs/wiki/index.md +10 -0
  208. fibernet-4.3.0/examples/01_mechanical_analysis.py +59 -0
  209. fibernet-4.3.0/examples/02_structure_comparison.py +77 -0
  210. fibernet-4.3.0/examples/03_thermal_analysis.py +20 -0
  211. fibernet-4.3.0/examples/04_buckling_analysis.py +54 -0
  212. fibernet-4.3.0/examples/05_chiral_braided_structures.py +67 -0
  213. fibernet-4.3.0/examples/06_uncertainty_quantification.py +77 -0
  214. fibernet-4.3.0/examples/07_electromagnetic_analysis.py +77 -0
  215. fibernet-4.3.0/examples/08_fatigue_analysis.py +95 -0
  216. fibernet-4.3.0/examples/09_creep_analysis.py +102 -0
  217. fibernet-4.3.0/examples/10_diffusion_transport.py +91 -0
  218. fibernet-4.3.0/examples/11_parameter_sweep.py +128 -0
  219. fibernet-4.3.0/examples/12_topology_analysis.py +136 -0
  220. fibernet-4.3.0/examples/13_publication_workflow.py +191 -0
  221. fibernet-4.3.0/examples/14_advanced_analysis.py +179 -0
  222. fibernet-4.3.0/examples/15_ml_property_prediction.py +222 -0
  223. fibernet-4.3.0/examples/16_fiber_bundles.py +177 -0
  224. fibernet-4.3.0/examples/17_composite_laminates.py +193 -0
  225. fibernet-4.3.0/examples/18_pyvista_visualization.py +153 -0
  226. fibernet-4.3.0/examples/19_optimization.py +225 -0
  227. fibernet-4.3.0/examples/22_lammps_harmonic_network.py +67 -0
  228. fibernet-4.3.0/examples/__init__.py +15 -0
  229. fibernet-4.3.0/examples/_archived/03_thermal_analysis.py +68 -0
  230. fibernet-4.3.0/examples/advanced_generators.py +81 -0
  231. fibernet-4.3.0/examples/cg_bent_branched_network.py +121 -0
  232. fibernet-4.3.0/examples/cg_crosslinked_network.py +130 -0
  233. fibernet-4.3.0/examples/comprehensive_demo.py +198 -0
  234. fibernet-4.3.0/examples/curve_inverse_workflow.py +74 -0
  235. fibernet-4.3.0/examples/curved_graph_analysis.py +78 -0
  236. fibernet-4.3.0/examples/custom_cell_workflow.py +65 -0
  237. fibernet-4.3.0/examples/data/lammps_braced_network_si.json +1 -0
  238. fibernet-4.3.0/examples/dynamic_viscoelastic_105.py +40 -0
  239. fibernet-4.3.0/examples/dynamic_viscoelastic_network.py +48 -0
  240. fibernet-4.3.0/examples/fixtures/dynamic_viscoelastic_105.json +1 -0
  241. fibernet-4.3.0/examples/fixtures/dynamic_viscoelastic_105_results.json +91 -0
  242. fibernet-4.3.0/examples/fracture_quickstart.py +22 -0
  243. fibernet-4.3.0/examples/full_workflow.py +177 -0
  244. fibernet-4.3.0/examples/graph_training_contract.py +150 -0
  245. fibernet-4.3.0/examples/integration_examples.py +566 -0
  246. fibernet-4.3.0/examples/linear_fem_quickstart.py +263 -0
  247. fibernet-4.3.0/examples/manufacturing_workflow.py +77 -0
  248. fibernet-4.3.0/examples/ml_example.py +154 -0
  249. fibernet-4.3.0/examples/multistroke_manufacturing.py +136 -0
  250. fibernet-4.3.0/examples/nonlinear_mechanics.py +174 -0
  251. fibernet-4.3.0/examples/obj_surface_workflow.py +69 -0
  252. fibernet-4.3.0/examples/one_way_joule_heating.py +46 -0
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  254. fibernet-4.3.0/examples/physical_dataset_workflow.py +66 -0
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  1282. fibernet-4.2.0/tests/_archived/test_comparison.py +0 -175
  1283. fibernet-4.2.0/tests/_archived/test_copy.py +0 -61
  1284. fibernet-4.2.0/tests/_archived/test_coupled.py +0 -93
  1285. fibernet-4.2.0/tests/_archived/test_creep.py +0 -120
  1286. fibernet-4.2.0/tests/_archived/test_cte.py +0 -198
  1287. fibernet-4.2.0/tests/_archived/test_curved.py +0 -266
  1288. fibernet-4.2.0/tests/_archived/test_damage.py +0 -111
  1289. fibernet-4.2.0/tests/_archived/test_diffusion.py +0 -104
  1290. fibernet-4.2.0/tests/_archived/test_dma.py +0 -124
  1291. fibernet-4.2.0/tests/_archived/test_dynamics.py +0 -247
  1292. fibernet-4.2.0/tests/_archived/test_edge_cases.py +0 -245
  1293. fibernet-4.2.0/tests/_archived/test_effective_properties.py +0 -99
  1294. fibernet-4.2.0/tests/_archived/test_electromagnetic.py +0 -76
  1295. fibernet-4.2.0/tests/_archived/test_ensemble.py +0 -221
  1296. fibernet-4.2.0/tests/_archived/test_fatigue.py +0 -123
  1297. fibernet-4.2.0/tests/_archived/test_fea_export.py +0 -224
  1298. fibernet-4.2.0/tests/_archived/test_field_guided.py +0 -83
  1299. fibernet-4.2.0/tests/_archived/test_fluid_acoustic.py +0 -96
  1300. fibernet-4.2.0/tests/_archived/test_fractal.py +0 -94
  1301. fibernet-4.2.0/tests/_archived/test_fracture_mechanics.py +0 -99
  1302. fibernet-4.2.0/tests/_archived/test_generators.py +0 -100
  1303. fibernet-4.2.0/tests/_archived/test_gnn.py +0 -261
  1304. fibernet-4.2.0/tests/_archived/test_gradient.py +0 -104
  1305. fibernet-4.2.0/tests/_archived/test_graph_api.py +0 -470
  1306. fibernet-4.2.0/tests/_archived/test_graph_neural_network.py +0 -298
  1307. fibernet-4.2.0/tests/_archived/test_homogenization.py +0 -134
  1308. fibernet-4.2.0/tests/_archived/test_incremental_fem.py +0 -212
  1309. fibernet-4.2.0/tests/_archived/test_integration.py +0 -259
  1310. fibernet-4.2.0/tests/_archived/test_integration_v3.py +0 -365
  1311. fibernet-4.2.0/tests/_archived/test_integrations.py +0 -167
  1312. fibernet-4.2.0/tests/_archived/test_io.py +0 -181
  1313. fibernet-4.2.0/tests/_archived/test_laminates.py +0 -279
  1314. fibernet-4.2.0/tests/_archived/test_mesh_export.py +0 -171
  1315. fibernet-4.2.0/tests/_archived/test_metamaterial_workflow.py +0 -194
  1316. fibernet-4.2.0/tests/_archived/test_metamaterials.py +0 -183
  1317. fibernet-4.2.0/tests/_archived/test_ml.py +0 -57
  1318. fibernet-4.2.0/tests/_archived/test_molecular_dynamics.py +0 -121
  1319. fibernet-4.2.0/tests/_archived/test_multiscale.py +0 -123
  1320. fibernet-4.2.0/tests/_archived/test_nonlinear.py +0 -187
  1321. fibernet-4.2.0/tests/_archived/test_optimization.py +0 -192
  1322. fibernet-4.2.0/tests/_archived/test_pandas_io.py +0 -199
  1323. fibernet-4.2.0/tests/_archived/test_parametric.py +0 -88
  1324. fibernet-4.2.0/tests/_archived/test_pbc.py +0 -87
  1325. fibernet-4.2.0/tests/_archived/test_percolation.py +0 -76
  1326. fibernet-4.2.0/tests/_archived/test_periodic.py +0 -139
  1327. fibernet-4.2.0/tests/_archived/test_permeability.py +0 -272
  1328. fibernet-4.2.0/tests/_archived/test_pyvista.py +0 -128
  1329. fibernet-4.2.0/tests/_archived/test_rl_environment.py +0 -91
  1330. fibernet-4.2.0/tests/_archived/test_simulation.py +0 -89
  1331. fibernet-4.2.0/tests/_archived/test_specialized.py +0 -85
  1332. fibernet-4.2.0/tests/_archived/test_stress_strain.py +0 -129
  1333. fibernet-4.2.0/tests/_archived/test_taichi_fem.py +0 -276
  1334. fibernet-4.2.0/tests/_archived/test_topology.py +0 -226
  1335. fibernet-4.2.0/tests/_archived/test_tpms.py +0 -59
  1336. fibernet-4.2.0/tests/_archived/test_transforms.py +0 -140
  1337. fibernet-4.2.0/tests/_archived/test_trimesh.py +0 -191
  1338. fibernet-4.2.0/tests/_archived/test_uncertainty.py +0 -212
  1339. fibernet-4.2.0/tests/_archived/test_validation.py +0 -78
  1340. fibernet-4.2.0/tests/_archived/test_viscoelastic.py +0 -125
  1341. fibernet-4.2.0/tests/_archived/test_visualization.py +0 -140
  1342. fibernet-4.2.0/tests/conftest.py +0 -56
  1343. fibernet-4.2.0/tests/test_3d_units.py +0 -298
  1344. fibernet-4.2.0/tests/test_advanced_ml_rl.py +0 -1382
  1345. fibernet-4.2.0/tests/test_ai_cycle_selector.py +0 -21
  1346. fibernet-4.2.0/tests/test_config.py +0 -198
  1347. fibernet-4.2.0/tests/test_constrained_cycle_intervention.py +0 -26
  1348. fibernet-4.2.0/tests/test_core.py +0 -145
  1349. fibernet-4.2.0/tests/test_crosslinks.py +0 -193
  1350. fibernet-4.2.0/tests/test_curve_inverse_cross_end.py +0 -47
  1351. fibernet-4.2.0/tests/test_custom_cell_registry.py +0 -66
  1352. fibernet-4.2.0/tests/test_cycle_intervention.py +0 -35
  1353. fibernet-4.2.0/tests/test_doe.py +0 -208
  1354. fibernet-4.2.0/tests/test_fem_parallel_contract.py +0 -60
  1355. fibernet-4.2.0/tests/test_fem_quickstart.py +0 -26
  1356. fibernet-4.2.0/tests/test_import_order.py +0 -32
  1357. fibernet-4.2.0/tests/test_independent_fem_cycle_intervention.py +0 -22
  1358. fibernet-4.2.0/tests/test_manufacturing_cross_end.py +0 -72
  1359. fibernet-4.2.0/tests/test_manufacturing_export.py +0 -35
  1360. fibernet-4.2.0/tests/test_materials.py +0 -62
  1361. fibernet-4.2.0/tests/test_ml_rl_utils.py +0 -272
  1362. fibernet-4.2.0/tests/test_open_source_workflow.py +0 -32
  1363. fibernet-4.2.0/tests/test_physical_dataset_cross_end.py +0 -41
  1364. fibernet-4.2.0/tests/test_physical_learning_cross_end.py +0 -72
  1365. fibernet-4.2.0/tests/test_pruning_matching.py +0 -21
  1366. fibernet-4.2.0/tests/test_recruitment_fem_validation.py +0 -21
  1367. fibernet-4.2.0/tests/test_recruitment_sensitivity.py +0 -33
  1368. fibernet-4.2.0/tests/test_reduced_beam_cross_end.py +0 -38
  1369. fibernet-4.2.0/tests/test_release_contract.py +0 -22
  1370. fibernet-4.2.0/tests/test_snapshot_features_cross_end.py +0 -72
  1371. fibernet-4.2.0/tests/test_spectrum_profile.py +0 -42
  1372. fibernet-4.2.0/tests/test_structure_parallel.py +0 -42
  1373. fibernet-4.2.0/tests/test_surface_mapping_cross_end.py +0 -65
  1374. fibernet-4.2.0/tests/test_surface_obj_import.py +0 -42
  1375. fibernet-4.2.0/tests/test_tensile_recruitment.py +0 -58
  1376. fibernet-4.2.0/tests/test_units.py +0 -170
  1377. {fibernet-4.2.0 → fibernet-4.3.0}/docs/images/01_2d_gallery.png +0 -0
  1378. {fibernet-4.2.0 → fibernet-4.3.0}/docs/images/05_trajectory_dark.png +0 -0
  1379. {fibernet-4.2.0 → fibernet-4.3.0}/docs/images/09_ml_analysis_dark.png +0 -0
  1380. {fibernet-4.2.0 → fibernet-4.3.0}/docs/images/11_rl_reward_dark.png +0 -0
  1381. {fibernet-4.2.0 → fibernet-4.3.0}/docs/images/fem_deformation_summary.png +0 -0
  1382. {fibernet-4.2.0 → fibernet-4.3.0}/docs/images/fem_showcase_dark.png +0 -0
  1383. {fibernet-4.2.0 → fibernet-4.3.0}/docs/images/fem_showcase_light.png +0 -0
  1384. {fibernet-4.2.0 → fibernet-4.3.0}/docs/images/voronoi_1.5x_auto.png +0 -0
  1385. {fibernet-4.2.0 → fibernet-4.3.0}/fibernet/examples/__init__.py +0 -0
@@ -0,0 +1,86 @@
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+ # The numerical cache identity hashes exact source bytes.
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+ FiberScope/fslab/*.py -text
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+
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+ # Source-contract and native-core bindings require byte-identical checkouts.
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+ fibernet/sim/accelerated.py -text
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+ fibernet/sim/_energy_accounting.py -text
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+ fibernet/viz/__init__.py -text
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+ tests/fixtures/observer_prior71_accelerated.txt -text
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+
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+ # Public regression baselines retain their source UTF-8 bytes.
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+ tests/fixtures/public_source_contract/**/*.txt -text
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+
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+ # The retained CG acceptance record pins exact compiler bytes.
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+ fibernet/integrations/_lammps_cg.py -text
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+
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+ # Exact API contract snapshots and their facade sources must keep Git bytes.
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+ fibernet/__init__.py -text
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+ fibernet/easy.py -text
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+ fibernet/api.py -text
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+ tests/fixtures/public_api_contract_v2/**/*.txt -text
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+ tests/fixtures/result_identity_contract_v1/compute_detailed.py.txt -text
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+ tests/fixtures/spring_coefficient_provenance_v1/accelerated_delta.json -text
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+
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+ # Reviewed optional facade sources and exact source snapshots retain Git bytes.
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+ fibernet/sim/__init__.py -text
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+ tests/fixtures/optional_facades_v2/*.txt -text
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+ tests/fixtures/optional_facades_v2/sim_lammps_capabilities_delta.json -text
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+ tests/fixtures/optional_facades_v2/root_fiber_network_profile_delta.json -text
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+ adapters/mcp/tests/fixtures/provenance_v1_outputs.json -text
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+
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+ # The reviewed explicit stretch-ratio API fixture retains exact source bytes.
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+ tests/fixtures/easy_stretch_ratio_v1/easy.py.txt -text
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+
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+ # The reviewed random-rollout failure fixture retains exact source bytes.
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+ tests/fixtures/easy_rl_failure_v1/easy.py.txt -text
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+
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+ # Atomic graph edits are bound to their exact reviewed source bytes.
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+ fibernet/core/structure_graph.py -text
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+
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+ # The saved-temperature transfer owner is included in exact native-core bindings.
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+ fibernet/sim/saved_temperature.py -text
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+
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+ # Thermoelastic API and owner are included in exact native-core bindings.
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+ fibernet/sim/thermoelastic.py -text
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+ fibernet/sim/_thermoelastic.py -text
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+
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+ # Reviewed geometry-policy deltas retain exact UTF-8 bytes.
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+ tests/fixtures/taichi_geometry_policy_v1/*.json -text
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+
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+ # Exact native-core bindings cover every package Python source.
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+ fibernet/**/*.py -text
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+
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+ # Bundled saved-electrothermal containers retain their exact encoded bytes.
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+ tests/fixtures/saved_electrothermal_v1/*.gz.b64 -text
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+
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+ # The deformation preparation golden retains its pinned UTF-8 bytes.
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+ tests/fixtures/deformed_transport_preparation_v1/planar_golden.json -text
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+ tests/fixtures/deformed_transport_preparation_v1/arithmetic_reference.py.txt -text
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+
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+ # This retained scientific witness is verified by its exact original SHA-256.
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+ # Preserve repository bytes even when a checkout uses core.autocrlf=true.
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+ /tests/fixtures/dynamic_viscoelastic_generalized_summary.json -text
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+ tests/fixtures/optional_facades_v2/sim_archived_ge_delta.json -text
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+ tests/fixtures/easy_show_dimension_v1/easy_delta.json -text
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+ tests/fixtures/native_io_dispatch_v1/api_delta.json -text
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+ tests/fixtures/easy_batch_report_v1/easy_delta.json -text
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+
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+ # Exact additive octet facade delta preserves its reviewed Git bytes.
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+ tests/fixtures/standard_octet_v1/root_facade_delta.json -text
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+
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+ # Reviewed legacy summary facade delta.
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+ tests/fixtures/legacy_analysis_v1/api_delta.json -text
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+
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+ # Exact reviewed LAMMPS persistence source delta.
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+ tests/fixtures/lammps_metadata_persistence_v1/accelerated_delta.json -text
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+
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+ # Exact result-processing source delta composed on current main.
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+ tests/fixtures/result_processing_v1/accelerated_delta.json -text
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+
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+ # Exact reviewed PR108 source deltas preserve historical lineage bytes.
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+ tests/fixtures/pr108_reviewed_source_v1/root_train_policy_delta.json -text
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+ tests/fixtures/pr108_reviewed_source_v1/easy_train_policy_delta.json -text
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+ tests/fixtures/pr108_reviewed_source_v1/mechanical_json_scalar_delta.json -text
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+
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+ # Accepted JSON/batch-input source deltas retain exact historical composition.
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+ tests/fixtures/release_input_contract_v1/*.json -text
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1
+ ## [Unreleased] - checked graph prediction
2
+
3
+ - Add `predict_gnn` for existing CPU scalar FiberGNN models and GraphBatch v1,
4
+ checking caller-declared raw XYZ+dimension compatibility while preserving
5
+ graph identity and prior module modes. Low-level forward remains unchanged.
6
+ - Return graph-aligned model-space predictions with an explicit caller-supplied
7
+ target name and unknown target-unit/transform statuses.
8
+
9
+ ## [Unreleased] - raw beam-resultant availability
10
+
11
+ - Expose the existing component contract on raw 2-D, 3-D and incremental 2-D beam results. Preserve numeric outputs and approximate qualifications; unrecovered 3-D shear slots remain explicitly unavailable.
12
+ - Document caller-qualified field-learning targets and retain unknown legacy component availability.
13
+
14
+ ## [Unreleased] - explicit Taichi geometry policy
15
+
16
+ - Breaking input acceptance: graph-based spring/Taichi calls now reject nonempty edge-owned `internal_points` by default. Explicit `geometry_policy="endpoint_chord"` retains the existing endpoint interpretation without modifying the graph or claiming curved-fiber mechanics.
17
+ - Forward the policy through direct/facade, streaming batch, Dataset and RL callers; bind batch/Dataset resumes to the policy and helper source. Actual-node straight-edge segmentation remains accepted, and generator/sampling defaults are unchanged.
18
+ - Preserve geometry provenance in ordinary result metadata. Legacy results are not backfilled. See `docs/TAICHI_GEOMETRY_POLICY.md` for migration and scope.
19
+
20
+ ## [Unreleased] - RL evaluation isolation
21
+
22
+ - Add keyword-only `eval_env` to `fibernet.rl.algorithms.train_rl`, enabling automatic evaluation independently of model saving.
23
+ - Reject shared known in-process training/evaluation environment objects before model or callback construction. Remote resources and custom wrappers still require caller-managed isolation.
24
+ - Save-only calls now warn and skip unsafe automatic evaluation on the training environment, while retaining checkpoint/final saves. Provide an independent `eval_env` to restore best-model selection.
25
+ - Document migration and bounded validation in `docs/architecture/rl-evaluation-isolation.md`; add inert contract regressions without real model training or simulation.
26
+ - Correct root/easy `train_rl` documentation to identify random-policy rollout statistics, not policy learning, and clarify batch damping's existing metadata-only behavior. Runtime and exports are unchanged; source-bound batch resume may require a fresh output directory after this documentation change.
27
+
28
+ ## [Unreleased] - thermal reconstruction budget
29
+
30
+ - Bound thermal capacity reconstruction with outward-rounded `C*rho`, where `rho` is the current returned-temperature reconstruction radius; retain separate field-evaluation allowances and unchanged algebraic/precision thresholds.
31
+ - Identify this numerical acceptance revision with `thermal_capacity_reconstruction_profile: binary64-rn-capacity-rho-1` in transient and coupled electrothermal provenance. Public call signatures and result layouts are unchanged; numerical bounds and acceptance outcomes may differ.
32
+ - Preserve explicit refusal for lost increments, unrepresentable products and heat scales too small for the precision budget. Smaller time steps are not guaranteed to be representable; this correction does not establish trajectory convergence or coupled-energy accuracy.
33
+ - Include self-contained synthetic acceptance/refusal tests with exact rational equation checks; no external capture file is required.
34
+
35
+ ## [Unreleased] - runtime compatibility
36
+
37
+ - Use ASCII status labels in easy training and batch helpers so decorative symbols do not break narrow redirected consoles; no locale or stream configuration is changed
38
+ - Read UTF-8 Python source fixtures explicitly in documentation/exporter tests; keep graph JSON loading on its historical default text codec
39
+ - Test invalid UTF-8 batch input with a complete graph and independent UTF-8/cp1252 disk-decoding oracles, separating decoder failures from stub-engine failures
40
+
41
+ - Temporarily restrict TaichiEngine and accel/full/dev extras to Taichi 1.7.4 for the version-verified runtime-lifetime repair; other versions fail explicitly
42
+ - Same-owner engines share the runtime; owning worker threads are supported, cross-owner use and unverifiable external initialization fail safely
43
+ - Non-Taichi backends are unaffected; broader Taichi versions require explicit lifecycle matrix validation
44
+
45
+ ## [4.3.0] - 2026-10-07
46
+
47
+ - Add experimental `fibernet.sim.fracture` Config/Solver/Result API and dedicated material-complete JSON CLI
48
+ - Preserve frozen linear Timoshenko, sparse equilibrium and near-tie removal kernels with source-hash provenance
49
+ - Add explicit units/grips, strict geometry/material validation, pre-removal event traces, null free-fragment poses and hash-bound resumable equilibrated checkpoints
50
+ - Add analytical/synthetic regression tests and a runnable public example; retain Python >=3.9 and old `simulate` semantics
51
+ - Add optional `fracture` dependencies (psutil, threadpoolctl); do not bundle LAMMPS or private research inputs/results
52
+ - Replace hard-coded 4.2.0 PyPI CI check with an explicit, version-parameterized post-publication verification workflow
53
+ - Scope: uncalibrated small-displacement static software; no automatic contact, finite-separation proof or fracture-toughness claim
54
+
55
+ ## [4.1.4] - 2026-07-23
56
+
57
+ ### Changed
58
+ - Rename `BeamFrameFEM_v6` → `BeamFrameFEM` (public API alias; `BeamFrameFEM_v6` still available for backward compatibility)
59
+ - Split Simulation section into Mass-Spring and FEM subsections with comparison table (physics, joints, radius effect, speed, use cases)
60
+ - Reorder showcase images: generation → mass-spring → trajectory → FEM → ML → RL
61
+ - Remove Performance section from README
62
+
63
+ ### Added
64
+ - `BeamFrameFEM` lazy import in `fibernet.ml` (importable as `from fibernet.ml import BeamFrameFEM`)
65
+ - FEM API section with linear/nonlinear solver explanation
66
+ - Mass-Spring vs FEM comparison table in both README.md and README_CN.md
67
+
68
+ ## [4.1.3] - 2026-07-23
69
+
70
+ ### Documentation
71
+ - Bilingual README overhaul: added dedicated Beam Frame FEM section with showcase images, API examples, and verification results
72
+ - README.md and README_CN.md updated to v4.1.2 feature set (26 unit types, dual simulation, FEM physics model)
73
+ - Added FEM showcase images (dark + light themes) to `docs/images/`
74
+
75
+ ### Improved
76
+ - Reorganized root-level files: community health files (CONTRIBUTING, SECURITY, CODE_OF_CONDUCT) moved to `.github/`, ATTRIBUTIONS.md moved to `docs/`, utility scripts moved to `scripts/`
77
+ - Updated MANIFEST.in for new file locations
78
+
79
+ ## [4.1.2] - 2026-07-23
80
+
81
+ ### Fixed
82
+ - **Critical**: `graph_to_fem_input()` now correctly extracts per-edge radius from StructureGraph
83
+ - Root cause: iterating `graph.edges` (Dict) gave keys (ints) instead of SEdge values
84
+ - FEM results now properly reflect fiber diameter changes (welded joint physics)
85
+ - `to_sim_result()` radius access fixed for energy calculation
86
+
87
+ ### Improved
88
+ - FEM showcase: restructured layout (5 rows) fixing middle-row panel overflow
89
+ - Dark theme: increased edge linewidth (0.6→2.0), switched to brighter colormaps (magma/RdYlBu)
90
+ - Radius variation row now shows physical stress dependence on fiber diameter
91
+
92
+ ## [4.1.1] - 2026-07-23
93
+
94
+ ### Added
95
+ - `BeamFrameFEM_v6.graph_to_fem_input()`: StructureGraph to FEM input conversion
96
+ - `BeamFrameFEM_v6.stretch_test()`: One-liner uniaxial FEM stretch test
97
+ - `BeamFrameFEM_v6.to_sim_result()`: Convert FEM dict to SimResult
98
+ - `render_fem_stress()`: FEM stress visualization (dark/light themes)
99
+
100
+ ### Fixed
101
+ - solve_2d and solve_3d: Invalid node index now raises clear ValueError
102
+ - solve_3d: Now returns reactions, edge_forces, K matrix (matching solve_2d)
103
+
104
+ ### API Improvement
105
+ - Basic FEM analysis: ~10 lines reduced to 3 lines
106
+
107
+ ## [4.1.0] - 2026-07-23
108
+
109
+ ### Added
110
+ - **BeamFrameFEM_v6**: Production-grade beam frame finite element method
111
+ - `solve_2d()`: Linear 2D beam frame analysis with axial + bending + shear
112
+ - `solve_2d_nonlinear()`: Geometrically nonlinear solver (co-rotational incremental)
113
+ - `solve_3d()`: 3D beam frame analysis
114
+ - Full stress decomposition: axial, bending, total stresses per element
115
+ - Reaction force computation at fixed boundaries
116
+ - Moment distribution along beams
117
+ - Validated against analytical cantilever, displacement BC, and nonlinear benchmarks
118
+
119
+ - **Large Deformation Test Suite**: Comprehensive FEM validation framework
120
+ - 152 simulations across 14 structure types (8 2D + 6 3D)
121
+ - 4 fiber radii (0.02, 0.05, 0.10, 0.20)
122
+ - Stretch targets: 2.0x, 1.5x, 0.7x, 0.5x
123
+ - Deformation propagation analysis (boundary vs interior displacement)
124
+ - Bending vs axial dominance quantification
125
+ - Checkpoint/resume support for long-running tests
126
+ - Key finding: 100% FULL deformation propagation, all structures BENDING-dominated
127
+
128
+ - **14 3D unit types** (up from initial set):
129
+ `bcc`, `chiral_3d`, `cubic`, `diamond_3d`, `fcc`, `gyroid`, `hcp`, `iwp`,
130
+ `lidinoid`, `neovius`, `octet`, `reentrant_3d`, `schwarz_d`, `schwarz_p`
131
+
132
+ - **12 2D unit types**: `chiral`, `cross`, `diamond`, `hexagon`, `honeycomb`,
133
+ `kagome`, `missing_rib`, `reentrant`, `square`, `star`, `triangle`, `voronoi`
134
+
135
+ ### Fixed
136
+ - `easy.py`: `simulate()` default mode changed from `"tension"` (invalid) to `"stretch"` (correct)
137
+ - `easy.py`: Docstring examples updated to match actual API
138
+
139
+ ### Changed
140
+ - Version bumped to 4.1.0 (minor release: new FEM module + 3D structures)
141
+
142
+ ## [4.0.5] - 2026-07-17
143
+
144
+ ### Fixed
145
+ - Vectorized `compute_detailed()` edge length computation (same pattern as trajectory save)
146
+
147
+ ### Changed
148
+ - `dynamics()` now supports `num_steps=0` for kernel warmup (field allocation + kernel compilation without simulation)
149
+ - Notebook (Cell 19) updated: kernel warmup added, JSON save restored with tqdm progress
150
+
151
+ ## [4.0.4] - 2026-07-17
152
+
153
+ ### Fixed
154
+ - **Critical: Progressive slowdown during batch simulation (kernel recompilation)**
155
+ - Moved `@ti.kernel def substep()` out of `dynamics()` method body
156
+ - Kernel now compiled once per `(dim, num_nodes, num_edges)` and cached alongside fields
157
+ - Before: Each `dynamics()` call recompiled the kernel → Taichi LLVM accumulated modules → progressive slowdown
158
+ - After: Kernel cached → constant per-structure time across hundreds of calls
159
+ - Test: 50 structures, first-10 avg = 6.60s, last-10 avg = 7.09s (ratio 1.07x — no slowdown)
160
+
161
+ ### Technical Details
162
+ - File: `fibernet/sim/accelerated.py`
163
+ - Change: Kernel definition moved inside the `_field_cache` allocation block, stored as `cached['substep']`
164
+ - Impact: Eliminates ~0.5-1s kernel compilation overhead per call after the first
165
+ - Combined with 4.0.2 (vectorized save) and 4.0.3 (field cache): total ~16x speedup from original
166
+
167
+ ## [4.0.3] - 2026-07-17
168
+
169
+ ### Fixed
170
+ - **Critical: Taichi SNode exhaustion causing simulation hang at ~128 structures**
171
+ - Added `_field_cache` to `TaichiEngine` class
172
+ - Reuses Taichi fields across calls with same `(dim, num_nodes, num_edges)`
173
+ - Before: Each `dynamics()` call allocated 14 Taichi fields → SNode limit (~1024) hit at ~128 calls → process hangs indefinitely
174
+ - After: Fields cached and reused → tested 150+ structures without hang
175
+ - Memory usage reduced significantly (no field accumulation)
176
+
177
+ ### Technical Details
178
+ - File: `fibernet/sim/accelerated.py`
179
+ - Change: Added class-level `_field_cache` dict keyed by `(dim, num_nodes, num_edges)`
180
+ - Impact: Fixes critical hang bug, improves memory efficiency
181
+ - Test: Successfully ran 150 structures sequentially (previously hung at #128)
182
+
183
+ ## [4.0.2] - 2026-07-16
184
+
185
+ ### Performance
186
+ - **16x speedup** in simulation trajectory saving
187
+ - Vectorized edge length computation in `dynamics()` method
188
+ - Replaced Python list comprehension with NumPy vectorized operation
189
+ - Before: ~93s per structure (30000 steps, save_interval=500)
190
+ - After: ~27s per structure with same parameters
191
+ - With recommended parameters (8000 steps): ~5.8s per structure
192
+
193
+ ### Fixed
194
+ - Simulation appearing to "hang" with many structures
195
+ - Root cause: excessive overhead in trajectory save loop
196
+ - Each save took ~1.17s due to Python loop over all edges
197
+ - Now <1ms per save with vectorized computation
198
+
199
+ ### Technical Details
200
+ - File: `fibernet/sim/accelerated.py`
201
+ - Change: `np.array([np.linalg.norm(...) for e in range(n)])` → `np.linalg.norm(..., axis=1)`
202
+ - Impact: Pure performance optimization, no API or numerical changes
203
+ - All 118 existing tests pass
204
+
205
+ # Changelog
206
+
207
+ All notable changes to this project will be documented in this file.
208
+
209
+ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
210
+ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
211
+
212
+ ## [1.18.0] - 2026-07-05
213
+
214
+ ### Added
215
+ - **Mesh export module** (`fibernet/io/mesh_export.py`)
216
+ - Export to STL (ASCII and binary)
217
+ - Export to Wavefront OBJ
218
+ - Export to Stanford PLY
219
+ - Cylindrical mesh generation for fibers
220
+ - Configurable polygon approximation (n_sides)
221
+
222
+ ### Tests
223
+ - 9 new tests in `tests/test_mesh_export.py`
224
+ - Total: 752 passing, 6 skipped
225
+
226
+ ## [1.17.0] - 2026-07-05
227
+
228
+ ### Added
229
+ - **Network comparison module** (`fibernet/analysis/comparison.py`)
230
+ - `NetworkFingerprint`: structural fingerprint computation
231
+ - `NetworkComparator`: pairwise distances, clustering, similarity search
232
+ - `compare_networks()`: compare multiple networks
233
+ - `network_similarity()`: pairwise similarity score
234
+ - Example 14: advanced structural analysis workflow
235
+
236
+ ### Tests
237
+ - 14 new tests in `tests/test_comparison.py`
238
+ - Total: 743 passing, 6 skipped
239
+
240
+ ## [1.16.0] - 2026-07-05
241
+
242
+ ### Added
243
+ - **Homogenization module** (`fibernet/analysis/homogenization.py`)
244
+ - `EffectiveElasticProperties`: E, nu, G computation (2D/3D)
245
+ - `EffectiveThermalProperties`: thermal conductivity, CTE
246
+ - `EffectiveElectricalProperties`: electrical conductivity
247
+ - `compute_effective_properties()`: comprehensive analysis
248
+
249
+ ### Tests
250
+ - 13 new tests in `tests/test_homogenization.py`
251
+ - Total: 729 passing, 6 skipped
252
+
253
+ ## [1.15.0] - 2026-07-05
254
+
255
+ ### Added
256
+ - **Spatial statistics module** (`fibernet/analysis/spatial.py`)
257
+ - `SpatialStatistics`: Ripley's K, pair correlation, nearest neighbor
258
+ - `OrientationAnalysis`: nematic order, orientation histograms
259
+ - `LengthAnalysis`: length distributions, statistics, fitting
260
+ - `ConnectivityAnalysis`: degree distribution, mean connectivity
261
+ - `AnisotropyAnalysis`: fabric tensor, anisotropy index
262
+ - `compute_spatial_statistics()`: comprehensive analysis
263
+
264
+ ### Tests
265
+ - 22 new tests in `tests/test_advanced_statistics.py`
266
+ - Total: 716 passing, 6 skipped
267
+
268
+ ## [1.14.0] - 2026-07-05
269
+
270
+ ### Added
271
+ - **Material database** (`fibernet/materials.py`)
272
+ - 29 pre-defined materials (polymers, metals, ceramics, biological, carbon)
273
+ - `get_material()`: quick material lookup
274
+ - `list_materials()`: list all available materials
275
+ - `compare_materials()`: material selection tool
276
+ - `m()`: shortcut for get_material
277
+ - **Unit conversion utilities** (`fibernet/units.py`)
278
+ - Length: m, mm, um, nm, cm, km, in, ft
279
+ - Force: N, kN, mN, µN, nN, lbf, dyne
280
+ - Pressure: Pa, kPa, MPa, GPa, TPa, bar, atm, psi, ksi
281
+ - Temperature: K, C, F, R
282
+ - Energy: J, kJ, mJ, cal, kcal, eV, BTU, kWh
283
+
284
+ ### Tests
285
+ - 33 new tests in `tests/test_materials.py` and `tests/test_units.py`
286
+ - Total: 694 passing, 6 skipped
287
+
288
+ ## [1.13.0] - 2026-07-05
289
+
290
+ ### Added
291
+ - **Fractal network generators** (`fibernet/gen/fractal.py`)
292
+ - Sierpinski triangle
293
+ - Koch curve
294
+ - Fractal tree
295
+ - Hilbert curve
296
+ - **Gradient network generators** (`fibernet/gen/gradient.py`)
297
+ - Density gradient (linear, exponential, sinusoidal)
298
+ - Property gradient (material properties varying spatially)
299
+ - Multi-zone networks (custom regions with different properties)
300
+ - Example 13: publication-ready research workflow
301
+
302
+ ### Tests
303
+ - 29 new tests in `tests/test_fractal.py` and `tests/test_gradient.py`
304
+ - Total: 687 passing, 6 skipped
305
+
306
+ ## [1.12.0] - 2026-07-04
307
+
308
+ ### Added
309
+ - Network topology analysis module
310
+ - Comprehensive topology metrics
311
+
312
+ ### Tests
313
+ - Total: 658 passing
314
+
315
+ ## [1.11.0] - 2026-07-04
316
+
317
+ ### Added
318
+ - Visualization module (2D/3D plotting)
319
+ - Design of Experiments (DOE) module
320
+ - Grid search
321
+ - Latin hypercube sampling
322
+ - Random sampling
323
+ - Sensitivity analysis
324
+
325
+ ### Tests
326
+ - Total: 635 passing
327
+
328
+ ## [1.10.0] - 2026-07-04
329
+
330
+ ### Added
331
+ - Fatigue analysis module
332
+ - Creep analysis module
333
+ - Diffusion/transport module
334
+
335
+ ### Tests
336
+ - Total: 607 passing
337
+
338
+ ## [1.9.0] - 2026-07-03
339
+
340
+ ### Added
341
+ - Benchmark suite for performance testing
342
+ - Enhanced multiscale testing
343
+
344
+ ### Tests
345
+ - Total: 585 passing
346
+
347
+ ## [1.8.0] - 2026-07-03
348
+
349
+ ### Added
350
+ - Electromagnetic analysis
351
+ - Molecular dynamics integration
352
+ - Open-source tool integrations
353
+ - Research case study examples
354
+
355
+ ### Tests
356
+ - Total: 575 passing
357
+
358
+ ## [1.7.0] - 2026-07-02
359
+
360
+ ### Added
361
+ - Graph neural network (GNN) module
362
+ - Permeability analysis
363
+ - Uncertainty quantification (UQ)
364
+ - Coefficient of thermal expansion (CTE)
365
+
366
+ ### Tests
367
+ - Total: 544 passing
368
+
369
+ ## [1.6.0] - 2026-07-02
370
+
371
+ ### Added
372
+ - Incremental FEM solver
373
+ - Buckling analysis module
374
+
375
+ ### Tests
376
+ - Total: 477 passing
377
+
378
+ ## [1.5.0] - 2026-07-01
379
+
380
+ ### Added
381
+ - Nonlinear mechanics module
382
+ - Damage mechanics
383
+ - Viscoelasticity
384
+
385
+ ### Tests
386
+ - Total: 448 passing
387
+
388
+ ## [1.4.0] - 2026-07-01
389
+
390
+ ### Added
391
+ - Periodic boundary conditions (PBC)
392
+ - Transforms module
393
+ - Advanced generators (chiral, woven, hierarchical)
394
+
395
+ ### Tests
396
+ - Total: 410 passing
397
+
398
+ ## [1.3.0] - 2026-06-30
399
+
400
+ ### Added
401
+ - Machine learning module
402
+ - Property prediction
403
+ - Feature engineering
404
+ - Percolation analysis
405
+ - Integration tests
406
+
407
+ ### Tests
408
+ - Total: 370 passing
409
+
410
+ ## [1.2.0] - 2026-06-30
411
+
412
+ ### Added
413
+ - Taichi-accelerated FEM solver
414
+ - I/O modules (VTK, LAMMPS, GMSH, PDB, XYZ)
415
+ - Pandas integration
416
+
417
+ ### Tests
418
+ - Total: 320 passing
419
+
420
+ ## [1.1.0] - 2026-06-29
421
+
422
+ ### Added
423
+ - Simulation modules (thermal, fracture, etc.)
424
+ - Core data structures
425
+ - Basic generators
426
+
427
+ ### Tests
428
+ - Total: 250 passing
429
+
430
+ ## [1.0.0] - 2026-06-28
431
+
432
+ ### Added
433
+ - Initial release
434
+ - Core fiber network data structures
435
+ - Basic random network generators
436
+ - Simple FEM solver
437
+ - Sphinx documentation framework
438
+ - GitHub Actions CI/CD
439
+ - pyproject.toml for pip installation
440
+
441
+ ### Tests
442
+ - Total: 180 passing
443
+
@@ -0,0 +1,21 @@
1
+ MIT License
2
+
3
+ Copyright (c) 2026 FiberNet Contributors
4
+
5
+ Permission is hereby granted, free of charge, to any person obtaining a copy
6
+ of this software and associated documentation files (the "Software"), to deal
7
+ in the Software without restriction, including without limitation the rights
8
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
9
+ copies of the Software, and to permit persons to whom the Software is
10
+ furnished to do so, subject to the following conditions:
11
+
12
+ The above copyright notice and this permission notice shall be included in all
13
+ copies or substantial portions of the Software.
14
+
15
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
16
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
17
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
18
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
19
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
20
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
21
+ SOFTWARE.
@@ -0,0 +1,11 @@
1
+ # Third-party and asset notices
2
+
3
+ FiberScope application source and the FiberNet toolkit are distributed under the repository MIT license. Third-party libraries retain their own licenses. License texts collected for the desktop distribution are under assets/licenses; optional training dependencies are not all embedded in the EXE.
4
+
5
+ PySide6 / Qt for Python and Shiboken are used under their applicable LGPL/GPL/commercial terms, with the relevant license texts included. The application source and Windows build script are supplied to permit rebuilding with compatible replacement libraries. Third-party software is not relicensed under MIT by this repository.
6
+
7
+ ## Geometry assets
8
+
9
+ demo_pyramid, demo_scarf, demo_sleeve, demo_tshirt and demo_vest are procedural demonstration geometries generated by project code. Reference-derived shirt, shoe and tower envelopes have transformation details and hashes in assets/obj/reference26.json. The author identifies the displayed products as transformed fibrous-network structures. Upstream redistribution licenses for those reference shapes and the older lung/heart/shoe assets have not been supplied; this notice does not represent those source shapes as MIT-original works or grant additional upstream rights. Original reference documents and high-resolution source OBJ files are not part of this release. The public web demo uses only procedural pyramid/sleeve/scarf models.
10
+
11
+ Bambu Studio is an external application. It is not bundled, and no printer credentials are included.