fiasco 0.8.dev0__tar.gz → 0.8.2__tar.gz

{fiasco-0.8.dev0 → fiasco-0.8.2}/.github/workflows/ci.yml

@@ -68,11 +68,6 @@ jobs:
   test_database_v7:
     if: |
       (
-        github.event_name != 'pull_request' && (
-          github.ref_name != 'main' ||
-          github.event_name == 'workflow_dispatch'
-        )
-      ) || (
         github.event_name == 'pull_request' &&
         contains(github.event.pull_request.labels.*.name, 'Run v7 tests')
       )

{fiasco-0.8.dev0 → fiasco-0.8.2}/.pre-commit-config.yaml

@@ -4,7 +4,7 @@ ci:
 
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: "v0.12.7"
+    rev: "v0.14.4"
     hooks:
       - id: ruff
         args: ["--fix"]

{fiasco-0.8.dev0 → fiasco-0.8.2}/.readthedocs.yml

@@ -3,7 +3,7 @@ version: 2
 build:
   os: ubuntu-lts-latest
   tools:
-    python: "mambaforge-latest"
+    python: "miniforge3-latest"
   jobs:
     post_checkout:
       - git fetch --unshallow || true

fiasco-0.8.2/.ruff.toml

@@ -0,0 +1,49 @@
+target-version = "py312"
+line-length = 110
+exclude=[
+  ".git,",
+  "__pycache__",
+  "build",
+  "fiasco/version.py",
+]
+show-fixes = true
+output-format = "full"
+
+[lint]
+select = [
+  "E",
+  "F",
+  "W",
+  "UP",
+  "PT",
+  #"RET",
+  #"TID",
+]
+extend-ignore = [
+  # pycodestyle (E, W)
+  "E501",  # LineTooLong                             # TODO! fix
+  "E741",  # Ambiguous variable name
+
+  # pytest (PT)
+  "PT001",  # Always use pytest.fixture()
+  "PT004",  # Fixtures which don't return anything should have leading _
+  "PT007",  # Parametrize should be lists of tuples  # TODO! fix
+  "PT011",  # Too broad exception assert             # TODO! fix
+  "PT023",  # Always use () on pytest decorators
+]
+
+[lint.per-file-ignores]
+# Part of configuration, not a package.
+"setup.py" = ["INP001"]
+"conftest.py" = ["INP001"]
+# implicit-namespace-package. The examples are not a package.
+"docs/*.py" = ["INP001"]
+# Module level imports do not need to be at the top of a file here
+"docs/conf.py" = ["E402"]
+"__init__.py" = ["E402", "F401", "F403"]
+"test_*.py" = ["B011", "D", "E402", "S101"]
+# Allow star import for the factory
+"fiasco/io/factory.py" = ["F403"]
+
+[lint.pydocstyle]
+convention = "numpy"

{fiasco-0.8.dev0 → fiasco-0.8.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: fiasco
-Version: 0.8.dev0
+Version: 0.8.2
 Summary: A Python interface to the CHIANTI atomic database
 Author-email: Will Barnes <will.t.barnes@gmail.com>
 License: Copyright (c) 2024, Will Barnes
@@ -51,7 +51,7 @@ License-File: LICENSE.rst
 Requires-Dist: astropy>=5.2
 Requires-Dist: fortranformat>=2
 Requires-Dist: h5py>=3.9
-Requires-Dist: numpy<2.3.0,>=1.25
+Requires-Dist: numpy>=1.25
 Requires-Dist: plasmapy>=2024.10.0
 Provides-Extra: all
 Requires-Dist: fiasco; extra == "all"

fiasco-0.8.2/docs/citation.rst

@@ -0,0 +1,10 @@
+.. include:: ../fiasco/CITATION.rst
+
+Works Citing
+============
+
+The following works have used and cited the fiasco package:
+
+.. bibliography:: works_citing.bib
+   :style: plain
+   :all:

{fiasco-0.8.dev0 → fiasco-0.8.2}/docs/conf.py

@@ -120,7 +120,7 @@ html_context = {
 }
 html_logo = '_static/fiasco-logo.png'
 # Set path for BibTeX file for all of our references
-bibtex_bibfiles = ['references.bib']
+bibtex_bibfiles = ['references.bib', 'works_citing.bib']
 # Sidebar removal
 html_sidebars = {
     "quick_start*": [],

{fiasco-0.8.dev0 → fiasco-0.8.2}/docs/reference/index.rst

@@ -41,3 +41,4 @@ Bibliography
 ------------
 
 .. bibliography::
+   :filter: keywords % "cited"

{fiasco-0.8.dev0 → fiasco-0.8.2}/docs/references.bib

@@ -1,6 +1,7 @@
 @article{badnell_radiative_2006,
   title = {Radiative {{Recombination Data}} for {{Modeling Dynamic Finite-Density Plasmas}}},
   author = {Badnell, N. R.},
+  keywords = {cited},
   year = {2006},
   month = dec,
   journal = {The Astrophysical Journal Supplement Series},
@@ -13,6 +14,7 @@
 @article{barnes_understanding_2019,
   title = {Understanding {{Heating}} in {{Active Region Cores}} through {{Machine Learning}}. {{I}}. {{Numerical Modeling}} and {{Predicted Observables}}},
   author = {Barnes, W. T. and Bradshaw, S. J. and Viall, N. M.},
+  keywords = {cited},
   year = {2019},
   month = jul,
   journal = {ApJ},
@@ -26,6 +28,7 @@
 @article{boerner_initial_2012,
   title = {Initial {{Calibration}} of the {{Atmospheric Imaging Assembly}} ({{AIA}}) on the {{Solar Dynamics Observatory}} ({{SDO}})},
   author = {Boerner, Paul and Edwards, Christopher and Lemen, James and Rausch, Adam and Schrijver, Carolus and Shine, Richard and Shing, Lawrence and Stern, Robert and Tarbell, Theodore and Title, Alan and Wolfson, C. Jacob and Soufli, Regina and Spiller, Eberhard and Gullikson, Eric and McKenzie, David and Windt, David and Golub, Leon and Podgorski, William and Testa, Paola and Weber, Mark},
+  keywords = {cited},
   year = {2012},
   month = jan,
   journal = {SoPh},
@@ -40,6 +43,7 @@
 @article{bradshaw_numerical_2009,
   title = {A Numerical Tool for the Calculation of Non-Equilibrium Ionisation States in the Solar Corona and Other Astrophysical Plasma Environments},
   author = {Bradshaw, S. J.},
+  keywords = {cited},
   year = {2009},
   month = jul,
   journal = {A\&A},
@@ -52,6 +56,7 @@
 @article{burgess_analysis_1992,
   title = {On the {{Analysis}} of {{Collision Strengths}} and {{Rate Coefficients}}},
   author = {Burgess, A. and Tully, J. A.},
+  keywords = {cited},
   year = {1992},
   month = feb,
   journal = {Astronomy and Astrophysics},
@@ -63,6 +68,7 @@
 @article{del_zanna_chianti_2015,
   title = {{{CHIANTI}} - {{An}} Atomic Database for Emission Lines. {{Version}} 8},
   author = {Del Zanna, G. and Dere, K. P. and Young, P. R. and Landi, E. and Mason, H. E.},
+  keywords = {cited},
   year = {2015},
   month = oct,
   journal = {Astronomy and Astrophysics},
@@ -75,6 +81,7 @@
 @article{del_zanna_chiantiatomic_2021,
   title = {{{CHIANTI}}\textemdash{{An Atomic Database}} for {{Emission Lines}}. {{XVI}}. {{Version}} 10, {{Further Extensions}}},
   author = {Del Zanna, G. and Dere, K. P. and Young, P. R. and Landi, E.},
+  keywords = {cited},
   year = {2021},
   month = mar,
   journal = {ApJ},
@@ -87,6 +94,7 @@
 @article{del_zanna_solar_2018,
   title = {Solar {{UV}} and {{X-ray}} Spectral Diagnostics},
   author = {Del Zanna, Giulio and Mason, Helen E.},
+  keywords = {cited},
   year = {2018},
   month = aug,
   journal = {LRSP},
@@ -101,6 +109,7 @@
 @article{dere_chianti_1997,
   title = {{{CHIANTI}} - an Atomic Database for Emission Lines - {{I}}. {{Wavelengths}} Greater than 50 {{\AA}}},
   author = {Dere, K. P. and Landi, E. and Mason, H. E. and Fossi, B. C. Monsignori and Young, P. R.},
+  keywords = {cited},
   year = {1997},
   journal = {A\&AS},
   volume = {125},
@@ -112,6 +121,7 @@
 @article{dere_chianti_2009,
   title = {{{CHIANTI}} - an Atomic Database for Emission Lines. {{IX}}. {{Ionization}} Rates, Recombination Rates, Ionization Equilibria for the Elements Hydrogen through Zinc and Updated Atomic Data},
   author = {Dere, K. P. and Landi, E. and Young, P. R. and Del Zanna, G. and Landini, M. and Mason, H. E.},
+  keywords = {cited},
   year = {2009},
   month = may,
   journal = {Astronomy and Astrophysics},
@@ -124,6 +134,7 @@
 @article{dere_chianti-atomic_2001,
   title = {{{CHIANTI-An Atomic Database}} for {{Emission Lines}}. {{IV}}. {{Extension}} to {{X-Ray Wavelengths}}},
   author = {Dere, K. P. and Landi, E. and Young, P. R. and Del Zanna, G.},
+  keywords = {cited},
   year = {2001},
   month = jun,
   journal = {The Astrophysical Journal Supplement Series},
@@ -136,6 +147,7 @@
 @article{dere_chiantiatomic_2019,
   title = {{{CHIANTI}}\textemdash{{An Atomic Database}} for {{Emission Lines}}. {{XV}}. {{Version}} 9, {{Improvements}} for the {{X-Ray Satellite Lines}}},
   author = {Dere, K. P. and Del Zanna, G. and Young, P. R. and Landi, E. and Sutherland, R. S.},
+  keywords = {cited},
   year = {2019},
   month = apr,
   journal = {ApJS},
@@ -148,6 +160,7 @@
 @article{dere_ionization_2007,
   title = {Ionization Rate Coefficients for the Elements Hydrogen through Zinc},
   author = {Dere, K. P.},
+  keywords = {cited},
   year = {2007},
   month = may,
   journal = {Astronomy and Astrophysics},
@@ -160,6 +173,7 @@
 @article{drake_spontaneous_1986,
   title = {Spontaneous Two-Photon Decay Rates in Hydrogenlike and Heliumlike Ions},
   author = {Drake, G. W. F.},
+  keywords = {cited},
   year = {1986},
   month = oct,
   journal = {Physical Review A},
@@ -174,6 +188,7 @@
 @article{feldman_potential_1992,
   title = {The Potential for Plasma Diagnostics from Stellar Extreme-Ultraviolet Observations},
   author = {Feldman, U. and Mandelbaum, P. and Seely, J. F. and Doschek, G. A. and Gursky, H.},
+  keywords = {cited},
   year = {1992},
   month = jul,
   journal = {ApJS},
@@ -186,6 +201,7 @@
 @article{fontes_fully_1999,
   title = {Fully Relativistic Calculations of and Fits to 1s Ionization Cross Sections},
   author = {Fontes, Christopher J. and Sampson, Douglas H. and Zhang, Hong Lin},
+  keywords = {cited},
   year = {1999},
   month = feb,
   journal = {Phys. Rev. A},
@@ -198,6 +214,7 @@
 @article{gronenschild_calculated_1978,
   title = {Calculated {{X-radiation}} from Optically Thin Plasmas. {{III}} - {{Abundance}} Effects on Continuum Emission},
   author = {Gronenschild, E. H. B. M. and Mewe, R.},
+  keywords = {cited},
   year = {1978},
   month = may,
   journal = {Astronomy and Astrophysics Supplement Series},
@@ -211,6 +228,7 @@
 @article{itoh_relativistic_2000,
   title = {Relativistic {{Thermal Bremsstrahlung Gaunt Factor}} for the {{Intracluster Plasma}}. {{II}}. {{Analytic Fitting Formulae}}},
   author = {Itoh, Naoki and Sakamoto, Tsuyoshi and Kusano, Shugo and Nozawa, Satoshi and Kohyama, Yasuharu},
+  keywords = {cited},
   year = {2000},
   month = may,
   journal = {The Astrophysical Journal Supplement Series},
@@ -223,6 +241,7 @@
 @article{itoh_radiative_2002,
   title = {Radiative Processes in the Intracluster Plasma},
   author = {Itoh, N. and Sakamoto, T. and Kusano, S. and Kawana, Y. and Nozawa, S.},
+  keywords = {cited},
   year = {2002},
   month = feb,
   journal = {Astronomy and Astrophysics},
@@ -238,6 +257,7 @@
 @article{karzas_electron_1961,
   title = {Electron {{Radiative Transitions}} in a {{Coulomb Field}}.},
   author = {Karzas, W. J. and Latter, R.},
+  keywords = {cited},
   year = {1961},
   month = may,
   journal = {The Astrophysical Journal Supplement Series},
@@ -250,6 +270,7 @@
 @article{landi_chianti_1999,
   title = {{{CHIANTI}} - an Atomic Database for Emission Lines. {{III}}. {{Continuum}} Radiation and Extension of the Ion Database},
   author = {Landi, E. and Landini, M. and Dere, K. P. and Young, P. R. and Mason, H. E.},
+  keywords = {cited},
   year = {1999},
   month = mar,
   journal = {Astronomy and Astrophysics Supplement Series},
@@ -262,6 +283,7 @@
 @article{landi_chianti-atomic_2002,
   title = {{{CHIANTI-An Atomic Database}} for {{Emission Lines}}. {{V}}. {{Comparison}} with an {{Isothermal Spectrum Observed}} with {{SUMER}}},
   author = {Landi, E. and Feldman, U. and Dere, K. P.},
+  keywords = {cited},
   year = {2002},
   month = mar,
   journal = {The Astrophysical Journal Supplement Series},
@@ -274,6 +296,7 @@
 @article{landi_chianti-atomic_2006,
   title = {{{CHIANTI-An Atomic Database}} for {{Emission Lines}}. {{VII}}. {{New Data}} for {{X-Rays}} and {{Other Improvements}}},
   author = {Landi, E. and Del Zanna, G. and Young, P. R. and Dere, K. P. and Mason, H. E. and Landini, M.},
+  keywords = {cited},
   year = {2006},
   month = jan,
   journal = {ApJS},
@@ -286,6 +309,7 @@
 @article{landi_chianti-atomic_2006-1,
   title = {{{CHIANTI-An Atomic Database}} for {{Emission Lines}}. {{VIII}}. {{Comparison}} with {{Solar Flare Spectra}} from the {{Solar Maximum Mission Flat Crystal Spectrometer}}},
   author = {Landi, E. and Phillips, K. J. H.},
+  keywords = {cited},
   year = {2006},
   month = sep,
   journal = {The Astrophysical Journal Supplement Series},
@@ -298,6 +322,7 @@
 @article{landi_chiantiatomic_2009,
   title = {{{CHIANTI}}\textemdash{{An Atomic Database}} for {{Emission Lines}}. {{X}}. {{Spectral Atlas}} of a {{Cold Feature Observed}} with {{Hinode}}/{{EUV Imaging Spectrometer}}},
   author = {Landi, E. and Young, P. R.},
+  keywords = {cited},
   year = {2009},
   month = nov,
   journal = {The Astrophysical Journal},
@@ -310,6 +335,7 @@
 @article{landi_chiantiatomic_2012,
   title = {{{CHIANTI}}\textemdash{{An Atomic Database}} for {{Emission Lines}}. {{XII}}. {{Version}} 7 of the {{Database}}},
   author = {Landi, E. and Del Zanna, G. and Young, P. R. and Dere, K. P. and Mason, H. E.},
+  keywords = {cited},
   year = {2012},
   month = jan,
   journal = {The Astrophysical Journal},
@@ -322,6 +348,7 @@
 @article{landi_chiantiatomic_2013,
   title = {{{CHIANTI}}\textemdash{{An Atomic Database}} for {{Emission Lines}}. {{XIII}}. {{Soft X-Ray Improvements}} and {{Other Changes}}},
   author = {Landi, E. and Young, P. R. and Dere, K. P. and Del Zanna, G. and Mason, H. E.},
+  keywords = {cited},
   year = {2013},
   month = feb,
   journal = {The Astrophysical Journal},
@@ -334,6 +361,7 @@
 @article{mewe_calculated_1986,
   title = {Calculated {{X-radiation}} from Optically Thin Plasmas. {{VI}} - {{Improved}} Calculations for Continuum Emission and Approximation Formulae for Nonrelativistic Average {{Gaunt}} Factors},
   author = {Mewe, R. and Lemen, J. R. and {van den Oord}, G. H. J.},
+  keywords = {cited},
   year = {1986},
   month = sep,
   journal = {Astronomy and Astrophysics Supplement Series},
@@ -347,6 +375,7 @@
 @book{phillips_ultraviolet_2008,
   title = {Ultraviolet and {{X-ray Spectroscopy}} of the {{Solar Atmosphere}}},
   author = {Phillips, Kenneth J. H. and Feldman, Uri and Landi, Enrico},
+  keywords = {cited},
   year = {2008},
   month = jun,
   publisher = {{Cambridge University Press}},
@@ -356,6 +385,7 @@
 @article{shull_ionization_1982,
   title = {The Ionization Equilibrium of Astrophysically Abundant Elements},
   author = {Shull, J. M. and {van Steenberg}, M.},
+  keywords = {cited},
   year = {1982},
   month = jan,
   journal = {The Astrophysical Journal Supplement Series},
@@ -368,6 +398,7 @@
 @article{sutherland_accurate_1998,
   title = {Accurate Free-Free {{Gaunt}} Factors for Astrophysical Plasmas},
   author = {Sutherland, Ralph S.},
+  keywords = {cited},
   year = {1998},
   month = oct,
   journal = {Monthly Notices of the Royal Astronomical Society},
@@ -380,6 +411,7 @@
 @article{verner_analytic_1995,
   title = {Analytic {{FITS}} for Partial Photoionization Cross Sections.},
   author = {Verner, D. A. and Yakovlev, D. G.},
+  keywords = {cited},
   year = {1995},
   month = jan,
   journal = {Astronomy and Astrophysics Supplement Series},
@@ -390,6 +422,7 @@
 @article{verner_atomic_1996,
   title = {Atomic {{Data}} for {{Astrophysics}}. {{I}}. {{Radiative Recombination Rates}} for {{H-like}}, {{He-like}}, {{Li-like}}, and {{Na-like Ions}} over a {{Broad Range}} of {{Temperature}}},
   author = {Verner, D. A. and Ferland, G. J.},
+  keywords = {cited},
   year = {1996},
   month = apr,
   journal = {The Astrophysical Journal Supplement Series},
@@ -402,6 +435,7 @@
 @article{young_chianti_2016,
   title = {The {{CHIANTI}} Atomic Database},
   author = {Young, P. R. and Dere, K. P. and Landi, E. and Zanna, G. Del and Mason, H. E.},
+  keywords = {cited},
   year = {2016},
   journal = {JPhB},
   volume = {49},
@@ -415,6 +449,7 @@
 @article{young_chianti-atomic_2003,
   title = {{{CHIANTI-An Atomic Database}} for {{Emission Lines}}. {{VI}}. {{Proton Rates}} and {{Other Improvements}}},
   author = {Young, P. R. and Del Zanna, G. and Landi, E. and Dere, K. P. and Mason, H. E. and Landini, M.},
+  keywords = {cited},
   year = {2003},
   month = jan,
   journal = {ApJS},
@@ -428,6 +463,7 @@
   title = {{{CHIANTI}}: An Atomic Database for Emission Lines. {{II}}. {{Comparison}} with the {{SERTS-89}} Active Region Spectrum},
   shorttitle = {{{CHIANTI}}},
   author = {Young, P. R. and Landi, E. and Thomas, R. J.},
+  keywords = {cited},
   year = {1998},
   month = jan,
   journal = {Astronomy and Astrophysics},
@@ -439,6 +475,7 @@
 @article{young_chiantiatomic_2009,
   title = {Chianti\textemdash{{An Atomic Database}} for {{Emission Lines}}. {{XI}}. {{Extreme-Ultraviolet Emission Lines}} of {{Fe VII}}, {{Fe VIII}}, and {{Fe IX Observed}} by {{Hinode}}/{{EIS}}},
   author = {Young, P. R. and Landi, E.},
+  keywords = {cited},
   year = {2009},
   month = dec,
   journal = {The Astrophysical Journal},
@@ -451,6 +488,7 @@
 @article{zatsarinny_dielectronic_2003,
   title = {Dielectronic Recombination Data for Dynamic Finite-Density Plasmas. {{II}}. {{The}} Oxygen Isoelectronic Sequence},
   author = {Zatsarinny, O. and Gorczyca, T. W. and Korista, K. T. and Badnell, N. R. and Savin, D. W.},
+  keywords = {cited},
   year = {2003},
   month = dec,
   journal = {Astronomy and Astrophysics},
@@ -463,6 +501,7 @@
 @techreport{dere_chianti_2017,
   title = {{{CHIANTI Technical Report No}}. 8: {{The CHIANTI}} Autoionization Rate Files (Auto)},
   author = {Dere, K. P.},
+  keywords = {cited},
   year = {2017},
   month = dec,
   number = {8},
@@ -474,6 +513,7 @@
 @techreport{young_chianti_2019,
   title = {{{CHIANTI Technical Report No}}. 24: {{The CHIANTI}} Level-Resolved Recombination Files (Rrlvl)},
   author = {Young, Peter R.},
+  keywords = {cited},
   year = {2019},
   month = feb,
   number = {24},
@@ -484,6 +524,7 @@
 @techreport{young_chianti_2019-1,
   title = {{{CHIANTI Technical Report No}}. 9: {{The}} Radiative Loss Function},
   author = {Young, Peter R.},
+  keywords = {cited},
   year = {2019},
   month = may,
   number = {9},
@@ -494,6 +535,7 @@
 @techreport{young_chianti_2021,
   title = {{{CHIANTI Technical Report No}}. 12: {{Computing}} the Free-Bound Continuum},
   author = {Young, Peter R.},
+  keywords = {cited},
   year = {2021},
   month = feb,
   number = {12},
@@ -505,6 +547,7 @@
   title = {{{CHIANTI-An Atomic Database}} for {{Emission Lines}}. {{XVII}}. {{Version}} 10.1: {{Revised Ionization}} and {{Recombination Rates}} and {{Other Updates}}},
   shorttitle = {{{CHIANTI-An Atomic Database}} for {{Emission Lines}}. {{XVII}}. {{Version}} 10.1},
   author = {Dere, Kenneth P. and Del Zanna, G. and Young, P. R. and Landi, E.},
+  keywords = {cited},
   year = {2023},
   month = oct,
   journal = {The Astrophysical Journal Supplement Series},
@@ -520,6 +563,7 @@
   title = {{{CHIANTI}}---{{An Atomic Database}} for {{Emission Lines}}---{{Paper}}. {{XVIII}}. {{Version}} 11, {{Advanced Ionization Equilibrium Models}}: {{Density}} and {{Charge Transfer Effects}}},
   shorttitle = {{{CHIANTI}}---{{An Atomic Database}} for {{Emission Lines}}---{{Paper}}. {{XVIII}}. {{Version}} 11, {{Advanced Ionization Equilibrium Models}}},
   author = {Dufresne, R. P. and Del Zanna, G. and Young, P. R. and Dere, K. P. and Deliporanidou, E. and Barnes, W. T. and Landi, E.},
+  keywords = {cited},
   year = {2024},
   month = oct,
   journal = {The Astrophysical Journal},
@@ -536,6 +580,7 @@
   title = {{{CHIANTI Technical Report No}}. 34: {{The CHIANTI Total Ionization Rate Files}} (Diparams, Easplups)},
   shorttitle = {{{CHIANTI Technical Report No}}. 34},
   author = {Young, Peter R.},
+  keywords = {cited},
   year = {2025},
   month = apr,
   number = {34},
@@ -549,9 +594,11 @@
   title = {{{CHIANTI Technical Report No}}. 33: {{Data Files}} for the {{Advanced Models}} (Ions, Models, Dilvl, Ealvl, Rrcoeffs, Drcoeffs, Ctilvl, Ctrlvl)},
   shorttitle = {{{CHIANTI Technical Report No}}. 33},
   author = {Dufresne, Roger},
+  keywords = {cited},
   year = {2024},
   month = mar,
   number = {33},
+  institution = {CHIANTI project},
   url = {https://www.chiantidatabase.org/tech_reports/33_advanced_model_files/Technical_report___advanced_model_data_files.pdf},
   urldate = {2025-07-18}
 }
@@ -559,6 +606,7 @@
 @article{nikolic_suppression_2018,
   title = {Suppression of {{Dielectronic Recombination Due}} to {{Finite Density Effects}}. {{II}}. {{Analytical Refinement}} and {{Application}} to {{Density-dependent Ionization Balances}} and {{AGN Broad-line Emission}}},
   author = {Nikoli{\'c}, D. and Gorczyca, T. W. and Korista, K. T. and Chatzikos, M. and Ferland, G. J. and Guzm{\'a}n, F. and {van Hoof}, P A. M. and Williams, R. J. R. and Badnell, N. R.},
+  keywords = {cited},
   year = {2018},
   month = aug,
   journal = {The Astrophysical Journal Supplement Series},

fiasco-0.8.2/docs/works_citing.bib

@@ -0,0 +1,136 @@
+
+@ARTICLE{benavitz_spatiotemporal_2025,
+       author = {{Benavitz}, Luke Fushimi and {Reep}, Jeffrey W. and {Tarr}, Lucas A. and {To}, Andy S.~H.},
+        title = "{Spatiotemporal Low First Ionization Potential Abundance: A Catalyst for Coronal Condensation}",
+      journal = {The Astrophysical Journal},
+     keywords = {citing},
+         year = 2025,
+        month = oct,
+       volume = {992},
+       number = {1},
+          eid = {4},
+        pages = {4},
+          doi = {10.3847/1538-4357/ae019d},
+archivePrefix = {arXiv},
+       eprint = {2504.05381},
+ primaryClass = {astro-ph.SR},
+       adsurl = {https://ui.adsabs.harvard.edu/abs/2025ApJ...992....4B},
+      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+
+@ARTICLE{garcia_tracing_2025,
+       author = {{Garc{\'\i}a}, Callie A. and {Rivera}, Yeimy J. and {Badman}, Samuel T. and {Raymond}, John C. and {Reeves}, Katharine K. and {Niembro}, Tatiana and {Paulson}, Kristoff W. and {Stevens}, Michael L.},
+        title = "{Tracing a Multi-Temperature Quiescent Prominence's Thermodynamic Evolution from Sun to Earth}",
+      journal = {arXiv e-prints},
+     keywords = {citing},
+         year = 2025,
+        month = dec,
+          eid = {arXiv:2512.09234},
+        pages = {arXiv:2512.09234},
+          doi = {10.48550/arXiv.2512.09234},
+archivePrefix = {arXiv},
+       eprint = {2512.09234},
+ primaryClass = {astro-ph.SR},
+       adsurl = {https://ui.adsabs.harvard.edu/abs/2025arXiv251209234G},
+      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+@phdthesis{hart_understanding_2024,
+  title={Understanding the Origins and Acceleration Mechanisms of 3He-Rich Solar Energetic Particle Events},
+  author={Hart, Samuel T},
+  keywords = {citing},
+  year={2024},
+  school={The University of Texas at San Antonio}
+}
+
+
+@ARTICLE{kerr_spatial_2026,
+       author = {{Kerr}, Graham S. and {Krucker}, S{\"a}m and {Allred}, Joel C. and {Rodr{\'\i}guez-G{\'o}mez}, Jenny M. and {Inglis}, Andrew R. and {Ryan}, Daniel F. and {Hayes}, Laura A. and {Milligan}, Ryan O. and {Kowalski}, Adam F. and {Plowman}, Joseph E. and {Young}, Peter R. and {Kucera}, Therese A. and {Brosius}, Jeffrey W.},
+        title = "{Spatial variation of energy transport mechanisms within solar flare ribbons}",
+      journal = {Nature Astronomy},
+     keywords = {citing},
+         year = 2026,
+        month = jan,
+          doi = {10.1038/s41550-025-02747-9},
+       adsurl = {https://ui.adsabs.harvard.edu/abs/2026NatAs.tmp....6K},
+      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+
+@ARTICLE{rivera_3DMHD_2023,
+       author = {{Rivera}, Yeimy J. and {Raymond}, John C. and {Reeves}, Katharine K. and {Lepri}, Susan T. and {Lionello}, Roberto and {Downs}, Cooper and {Wilson}, Maurice L. and {Trueba}, Nicolas},
+        title = "{3D MHD Time-dependent Charge State Ionization and Recombination Modeling of the Bastille Day Coronal Mass Ejection}",
+      journal = {The Astrophysical Journal},
+     keywords = {citing},
+         year = 2023,
+        month = sep,
+       volume = {955},
+       number = {1},
+          eid = {65},
+        pages = {65},
+          doi = {10.3847/1538-4357/aceef8},
+       adsurl = {https://ui.adsabs.harvard.edu/abs/2023ApJ...955...65R},
+      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+
+@ARTICLE{rivera_differentiating_2025,
+       author = {{Rivera}, Yeimy J. and {Badman}, Samuel T. and {Verniero}, J.~L. and {Varesano}, Tania and {Stevens}, Michael L. and {Stawarz}, Julia E. and {Reeves}, Katharine K. and {Raines}, Jim M. and {Raymond}, John C. and {Owen}, Christopher J. and {Livi}, Stefano A. and {Lepri}, Susan T. and {Landi}, Enrico and {Halekas}, Jasper. S. and {Ervin}, Tamar and {Dewey}, Ryan M. and {De Marco}, Rossana and {D'Amicis}, Raffaella and {Dakeyo}, Jean-Baptiste and {Bale}, Stuart D. and {Alterman}, B.~L.},
+        title = "{Differentiating the Acceleration Mechanisms in the Slow and Alfv{\'e}nic Slow Solar Wind}",
+      journal = {The Astrophysical Journal},
+     keywords = {citing},
+         year = 2025,
+        month = feb,
+       volume = {980},
+       number = {1},
+          eid = {70},
+        pages = {70},
+          doi = {10.3847/1538-4357/ada699},
+archivePrefix = {arXiv},
+       eprint = {2501.02163},
+ primaryClass = {astro-ph.SR},
+       adsurl = {https://ui.adsabs.harvard.edu/abs/2025ApJ...980...70R},
+      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+
+@ARTICLE{ryan_solar_2025,
+       author = {{Ryan}, Daniel F. and {Hayes}, Laura A. and {Collier}, Hannah and {Kerr}, Graham S. and {Inglis}, Andrew R. and {Williams}, David and {Walsh}, Andrew P. and {Janvier}, Miho and {M{\"u}ller}, Daniel and {Berghmans}, David and {Verbeeck}, Cis and {Kraaikamp}, Emil and {Young}, Peter R. and {Kucera}, Therese A. and {Krucker}, S{\"a}m and {Stiefel}, Muriel Z. and {Calchetti}, Daniele and {Reeves}, Katharine K. and {Savage}, Sabrina and {Polito}, Vanessa},
+        title = "{Solar Orbiter's 2024 Major Flare Campaigns: An Overview}",
+      journal = {Solar Physics},
+     keywords = {citing},
+         year = 2025,
+        month = nov,
+       volume = {300},
+       number = {11},
+          eid = {152},
+        pages = {152},
+          doi = {10.1007/s11207-025-02561-6},
+archivePrefix = {arXiv},
+       eprint = {2505.07472},
+ primaryClass = {astro-ph.SR},
+       adsurl = {https://ui.adsabs.harvard.edu/abs/2025SoPh..300..152R},
+      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+
+@ARTICLE{varesano_FIP_2025,
+       author = {{Varesano}, T. and {Hassler}, D.~M. and {Zambrana Prado}, N. and {Laming}, J.~M. and {Plowman}, J. and {Knipp}, D.~J. and {Molnar}, M. and {Barczynski}, K. and {SPICE consortium}, The},
+        title = "{FIP Bias Evolution in an Emerging Active Region as observed in SPICE Synoptic Observations}",
+      journal = {arXiv e-prints},
+     keywords = {citing},
+         year = 2025,
+        month = feb,
+          eid = {arXiv:2502.12045},
+        pages = {arXiv:2502.12045},
+          doi = {10.48550/arXiv.2502.12045},
+archivePrefix = {arXiv},
+       eprint = {2502.12045},
+ primaryClass = {astro-ph.SR},
+       adsurl = {https://ui.adsabs.harvard.edu/abs/2025arXiv250212045V},
+      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+
+

{fiasco-0.8.dev0 → fiasco-0.8.2}/examples/idl_comparisons/continuum_comparison.py

@@ -104,7 +104,9 @@ ion_kwargs = {'abundance': idl_result_twophoton['abundance'],
               'ionization_fraction': idl_result_twophoton['ionization_fraction']}
 all_ions = [fiasco.Ion(ion_name, idl_result_twophoton['temperature'], **ion_kwargs) for ion_name in fiasco.list_ions()]
 all_ions = fiasco.IonCollection(*all_ions)
-two_photon = all_ions.two_photon(idl_result_twophoton['wavelength'], idl_result_twophoton['density']).squeeze()
+two_photon = all_ions.two_photon(idl_result_twophoton['wavelength'],
+                                 idl_result_twophoton['density'],
+                                 use_two_ion_model=False).squeeze()
 plot_idl_comparison(idl_result_twophoton['wavelength'],
                     idl_result_twophoton['temperature'],
                     two_photon,

{fiasco-0.8.dev0 → fiasco-0.8.2}/examples/idl_comparisons/goft_comparison.py

@@ -47,7 +47,7 @@ def plot_idl_comparison(x, y_idl, y_python, fig, n_rows, i_row, quantity_name, t
     ax2.axhline(y=1, color='k', ls=':')
     if i_row == 0:
         ax2.set_title('fiasco / IDL')
-    diff_limit = .05
+    diff_limit = 0.02
     ax2.set_ylim(1-diff_limit, 1+diff_limit)
     # Normalized difference
     ax3 = fig.add_subplot(n_rows, 3, i_row+3, sharex=ax1)
@@ -109,3 +109,4 @@ for i, name in enumerate(goft_files):
     print(f"CHIANTI IDL {idl_result['chianti_idl_version']}")
     print(f'IDL code to produce {line_label} contribution function result:')
     print(idl_result['idl_script'])
+plt.show()

{fiasco-0.8.dev0 → fiasco-0.8.2}/examples/user_guide/aia_response.py

@@ -42,7 +42,7 @@ plt.show()
 ############################################################
 # Next, we construct for the `~fiasco.Ion` object for Fe 18. Note
 # that by default we use the coronal abundances of :cite:t:`feldman_potential_1992`.
-temperature = 10.**(np.arange(4.5, 8, 0.05)) * u.K
+temperature = 10.**(np.arange(4.5, 8, 0.1)) * u.K
 fe18 = fiasco.Ion('Fe 18', temperature)
 
 ############################################################

{fiasco-0.8.dev0 → fiasco-0.8.2}/examples/user_guide/ion_collection.py

@@ -25,7 +25,7 @@ quantity_support()
 #
 # We will create `~fiasco.IonCollection` containing both O VI
 # and Fe XVIII
-temperature = np.geomspace(1e4,1e8,100) * u.K
+temperature = np.geomspace(10**5, 10**7.5, 30) * u.K
 fe18 = fiasco.Ion('Fe XVIII', temperature)
 o6 = fiasco.Ion('O VI', temperature)
 col = fiasco.IonCollection(fe18, o6)