fhiratwill 0.1.0__tar.gz

fhiratwill-0.1.0/.gitignore

@@ -0,0 +1,14 @@
+__pycache__/
+*.py[cod]
+*.egg-info/
+.coverage
+.hypothesis/
+.mypy_cache/
+.pytest_cache/
+.ruff_cache/
+.venv/
+build/
+dist/
+.idea/
+.vscode/
+*.log

fhiratwill-0.1.0/CHANGELOG.md

@@ -0,0 +1,18 @@
+# Changelog
+
+All notable changes follow [Keep a Changelog](https://keepachangelog.com/en/1.1.0/).
+This project uses [Semantic Versioning](https://semver.org/).
+
+## [Unreleased]
+
+## [0.1.0] - 2026-09-06
+
+### Added
+
+- Deterministic FHIR assembly and PHI-free evidence.
+- Exact-match terminology binding through an async adapter protocol.
+- Subject-context preflight and reference rebinding.
+- Generic target descriptors and idempotent write-plan compilation.
+
+[Unreleased]: https://github.com/Safwanmahmoud/fhirbridge/compare/v0.1.0...HEAD
+[0.1.0]: https://github.com/Safwanmahmoud/fhirbridge/releases/tag/v0.1.0

fhiratwill-0.1.0/CONTRIBUTING.md

@@ -0,0 +1,45 @@
+# Contributing
+
+Use Python 3.11 or newer and synthetic test data only.
+
+```bash
+python -m pip install -e ".[dev]"
+ruff check .
+mypy
+pytest
+python -m build
+twine check dist/*
+```
+
+Preserve these invariants:
+
+- never add a clinical code without deterministic terminology verification;
+- retain source text when adding coding;
+- propagate terminology outages rather than treating them as invalid codes;
+- never infer or search for destination identity;
+- keep notes and exceptions free of PHI; and
+- keep transport, credentials, databases, and framework integrations outside core.
+
+Open a focused issue or pull request and update tests and public documentation with behavior.
+
+## Releasing to PyPI
+
+The release workflow uses PyPI Trusted Publishing and does not accept an API token.
+Before the first release, create a pending publisher on PyPI with:
+
+- project name: `fhiratwill`
+- owner: `Safwanmahmoud`
+- repository: `fhirbridge`
+- workflow: `release.yml`
+- environment: `pypi`
+
+Also create a protected GitHub environment named `pypi`. Then:
+
+1. update `__version__` in `src/fhiratwill/__init__.py`;
+2. move the release notes in `CHANGELOG.md` under that version;
+3. run every command above from a clean checkout;
+4. commit and tag the exact version as `v<version>`; and
+5. publish the corresponding GitHub Release.
+
+Publishing the GitHub Release triggers one build job and one trusted-publishing job.
+Do not upload a locally built artifact or configure a long-lived PyPI credential.

fhiratwill-0.1.0/LICENSE

@@ -0,0 +1,190 @@
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
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+      You may add Your own copyright statement to Your modifications and
+      may provide additional or different license terms and conditions
+      for use, reproduction, or distribution of Your modifications, or
+      for any such Derivative Works as a whole, provided Your use,
+      reproduction, and distribution of the Work otherwise complies with
+      the conditions stated in this License.
+
+   5. Submission of Contributions. Unless You explicitly state otherwise,
+      any Contribution intentionally submitted for inclusion in the Work
+      by You to the Licensor shall be under the terms and conditions of
+      this License, without any additional terms or conditions.
+      Notwithstanding the above, nothing herein shall supersede or modify
+      the terms of any separate license agreement you may have executed
+      with Licensor regarding such Contributions.
+
+   6. Trademarks. This License does not grant permission to use the trade
+      names, trademarks, service marks, or product names of the Licensor,
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+
+   7. Disclaimer of Warranty. Unless required by applicable law or
+      agreed to in writing, Licensor provides the Work (and each
+      Contributor provides its Contributions) on an "AS IS" BASIS,
+      WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
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+      PARTICULAR PURPOSE. You are solely responsible for determining the
+      appropriateness of using or redistributing the Work and assume any
+      risks associated with Your exercise of permissions under this License.
+
+   8. Limitation of Liability. In no event and under no legal theory,
+      whether in tort (including negligence), contract, or otherwise,
+      unless required by applicable law (such as deliberate and grossly
+      negligent acts) or agreed to in writing, shall any Contributor be
+      liable to You for damages, including any direct, indirect, special,
+      incidental, or consequential damages of any character arising as a
+      result of this License or out of the use or inability to use the
+      Work (including but not limited to damages for loss of goodwill,
+      work stoppage, computer failure or malfunction, or any and all
+      other commercial damages or losses), even if such Contributor
+      has been advised of the possibility of such damages.
+
+   9. Accepting Warranty or Additional Liability. While redistributing
+      the Work or Derivative Works thereof, You may choose to offer,
+      and charge a fee for, acceptance of support, warranty, indemnity,
+      or other liability obligations and/or rights consistent with this
+      License. However, in accepting such obligations, You may act only
+      on Your own behalf and on Your sole responsibility, not on behalf
+      of any other Contributor, and only if You agree to indemnify,
+      defend, and hold each Contributor harmless for any liability
+      incurred by, or claims asserted against, such Contributor by reason
+      of your accepting any such warranty or additional liability.
+
+   END OF TERMS AND CONDITIONS
+
+   Copyright 2026 fhiratwill contributors
+
+   Licensed under the Apache License, Version 2.0 (the "License");
+   you may not use this file except in compliance with the License.
+   You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.

fhiratwill-0.1.0/PKG-INFO

@@ -0,0 +1,151 @@
+Metadata-Version: 2.4
+Name: fhiratwill
+Version: 0.1.0
+Summary: Deterministic, safety-focused FHIR assembly, terminology binding, and write planning.
+Project-URL: Homepage, https://github.com/Safwanmahmoud/fhirbridge
+Project-URL: Documentation, https://github.com/Safwanmahmoud/fhirbridge#readme
+Project-URL: Source, https://github.com/Safwanmahmoud/fhirbridge
+Project-URL: Issues, https://github.com/Safwanmahmoud/fhirbridge/issues
+Author: fhiratwill contributors
+License-Expression: Apache-2.0
+License-File: LICENSE
+Keywords: fhir,healthcare,hl7,interoperability,terminology
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Developers
+Classifier: Intended Audience :: Healthcare Industry
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
+Classifier: Typing :: Typed
+Requires-Python: >=3.11
+Requires-Dist: fhir-resources<9,>=8.0
+Requires-Dist: pydantic<3,>=2.8
+Requires-Dist: pyyaml<7,>=6.0
+Provides-Extra: dev
+Requires-Dist: build<2,>=1.2; extra == 'dev'
+Requires-Dist: mypy<2,>=1.11; extra == 'dev'
+Requires-Dist: pytest-asyncio<2,>=0.24; extra == 'dev'
+Requires-Dist: pytest<9,>=8.3; extra == 'dev'
+Requires-Dist: ruff<1,>=0.8; extra == 'dev'
+Requires-Dist: twine<7,>=5.1; extra == 'dev'
+Requires-Dist: types-pyyaml<7,>=6.0; extra == 'dev'
+Description-Content-Type: text/markdown
+
+# fhiratwill
+
+Deterministic, transport-neutral building blocks for assembling, terminology-binding,
+context-rebinding, and planning writes of FHIR R4 resources.
+
+> Alpha software. Generated resources remain untrusted until independently validated and
+> reviewed for the intended clinical workflow.
+
+## Install
+
+```bash
+pip install fhiratwill
+```
+
+Python 3.11 or newer is required.
+
+## Assemble deterministically
+
+```python
+from fhiratwill import assemble_bundle
+
+entities = [
+    {"resourceType": "Patient", "instance": "subject", "keyword": "gender", "value": "female"},
+    {"resourceType": "Observation", "instance": "pulse", "keyword": "code", "value": "heart rate"},
+    {
+        "resourceType": "Observation",
+        "instance": "pulse",
+        "keyword": "valueQuantity",
+        "value": "72/min",
+    },
+]
+result = assemble_bundle(entities, seed="conversion-123")
+bundle = result.bundle
+```
+
+Assembly keeps coded concepts as text, refuses unsafe coercions, records PHI-free notes,
+and produces stable UUIDs for a stable seed. It does not validate clinical truth.
+
+## Bind using your terminology adapter
+
+Implement the async `TerminologyClient` protocol for your terminology service. The library
+contains no HTTP client, URL, authentication, or credentials.
+
+```python
+from fhiratwill import TerminologyClient, bind_bundle
+
+
+async def bind(bundle: dict, terminology: TerminologyClient) -> dict:
+    result = await bind_bundle(bundle, client=terminology)
+    return result.bundle
+```
+
+Binding uses exact aliases from the packaged, reviewed `concepts.yaml`; it performs no
+fuzzy or model-based coding. A candidate is added only after the adapter verifies it.
+Original `CodeableConcept.text` is retained. Adapters must raise
+`TerminologyUnavailableError` when no authoritative answer is available; outages
+propagate and fail closed.
+
+## Rebind and compile a write plan
+
+```python
+from fhiratwill import (
+    GENERIC_FHIR_TARGET,
+    SubjectContext,
+    compile_write_plan,
+    rebind_bundle,
+)
+
+context = SubjectContext(patient_ref="Patient/123", encounter_ref="Encounter/456")
+rebound, notes = rebind_bundle(bundle, context)
+plan = compile_write_plan(
+    bundle=bundle,
+    context=context,
+    conversion_id="conversion-123",
+    tenant_id="tenant-7",
+    descriptor=GENERIC_FHIR_TARGET,
+)
+```
+
+Generated Patient and Encounter resources are always excluded. References are rebound only
+to caller-supplied context. The optional preflight adapter supports direct reads only—never
+identity search. Write plans contain deterministic idempotency keys and, when supported by
+the descriptor, a FHIR transaction Bundle.
+
+## Scope
+
+This library:
+
+- assembles grounded entity mappings into deterministic FHIR resources;
+- verifies exact terminology candidates through a caller-provided adapter;
+- checks and rebinds caller-supplied subject context; and
+- compiles destination-neutral write plans.
+
+This library does **not** submit data, authenticate to an EHR, host a terminology service,
+perform target HTTP calls, validate full FHIR conformance, provide clinical decision
+support, or establish HIPAA, GDPR, medical-device, or other regulatory compliance.
+
+## Development
+
+```bash
+python -m pip install -e ".[dev]"
+ruff check .
+mypy
+pytest
+python -m build
+twine check dist/*
+```
+
+No publishing command is part of the development workflow. See `CONTRIBUTING.md` and
+`SECURITY.md` before contributing.
+
+## License
+
+Apache License 2.0.

fhiratwill-0.1.0/README.md

@@ -0,0 +1,114 @@
+# fhiratwill
+
+Deterministic, transport-neutral building blocks for assembling, terminology-binding,
+context-rebinding, and planning writes of FHIR R4 resources.
+
+> Alpha software. Generated resources remain untrusted until independently validated and
+> reviewed for the intended clinical workflow.
+
+## Install
+
+```bash
+pip install fhiratwill
+```
+
+Python 3.11 or newer is required.
+
+## Assemble deterministically
+
+```python
+from fhiratwill import assemble_bundle
+
+entities = [
+    {"resourceType": "Patient", "instance": "subject", "keyword": "gender", "value": "female"},
+    {"resourceType": "Observation", "instance": "pulse", "keyword": "code", "value": "heart rate"},
+    {
+        "resourceType": "Observation",
+        "instance": "pulse",
+        "keyword": "valueQuantity",
+        "value": "72/min",
+    },
+]
+result = assemble_bundle(entities, seed="conversion-123")
+bundle = result.bundle
+```
+
+Assembly keeps coded concepts as text, refuses unsafe coercions, records PHI-free notes,
+and produces stable UUIDs for a stable seed. It does not validate clinical truth.
+
+## Bind using your terminology adapter
+
+Implement the async `TerminologyClient` protocol for your terminology service. The library
+contains no HTTP client, URL, authentication, or credentials.
+
+```python
+from fhiratwill import TerminologyClient, bind_bundle
+
+
+async def bind(bundle: dict, terminology: TerminologyClient) -> dict:
+    result = await bind_bundle(bundle, client=terminology)
+    return result.bundle
+```
+
+Binding uses exact aliases from the packaged, reviewed `concepts.yaml`; it performs no
+fuzzy or model-based coding. A candidate is added only after the adapter verifies it.
+Original `CodeableConcept.text` is retained. Adapters must raise
+`TerminologyUnavailableError` when no authoritative answer is available; outages
+propagate and fail closed.
+
+## Rebind and compile a write plan
+
+```python
+from fhiratwill import (
+    GENERIC_FHIR_TARGET,
+    SubjectContext,
+    compile_write_plan,
+    rebind_bundle,
+)
+
+context = SubjectContext(patient_ref="Patient/123", encounter_ref="Encounter/456")
+rebound, notes = rebind_bundle(bundle, context)
+plan = compile_write_plan(
+    bundle=bundle,
+    context=context,
+    conversion_id="conversion-123",
+    tenant_id="tenant-7",
+    descriptor=GENERIC_FHIR_TARGET,
+)
+```
+
+Generated Patient and Encounter resources are always excluded. References are rebound only
+to caller-supplied context. The optional preflight adapter supports direct reads only—never
+identity search. Write plans contain deterministic idempotency keys and, when supported by
+the descriptor, a FHIR transaction Bundle.
+
+## Scope
+
+This library:
+
+- assembles grounded entity mappings into deterministic FHIR resources;
+- verifies exact terminology candidates through a caller-provided adapter;
+- checks and rebinds caller-supplied subject context; and
+- compiles destination-neutral write plans.
+
+This library does **not** submit data, authenticate to an EHR, host a terminology service,
+perform target HTTP calls, validate full FHIR conformance, provide clinical decision
+support, or establish HIPAA, GDPR, medical-device, or other regulatory compliance.
+
+## Development
+
+```bash
+python -m pip install -e ".[dev]"
+ruff check .
+mypy
+pytest
+python -m build
+twine check dist/*
+```
+
+No publishing command is part of the development workflow. See `CONTRIBUTING.md` and
+`SECURITY.md` before contributing.
+
+## License
+
+Apache License 2.0.

fhiratwill-0.1.0/SECURITY.md

@@ -0,0 +1,20 @@
+# Security Policy
+
+## Supported versions
+
+Security fixes are provided for the latest released minor version.
+
+## Reporting
+
+Report suspected vulnerabilities privately through GitHub Security Advisories:
+
+https://github.com/Safwanmahmoud/fhirbridge/security/advisories/new
+
+Do not include real patient data, credentials, or other secrets in a report. Use synthetic,
+minimal reproductions. Please do not open a public issue for an unpatched vulnerability.
+
+## Scope and safety
+
+This package performs no authentication or network submission. Applications remain
+responsible for transport security, authorization, audit, independent FHIR validation,
+clinical review, and applicable regulatory obligations.

fhiratwill-0.1.0/pyproject.toml

@@ -0,0 +1,94 @@
+[build-system]
+# Hatchling 1.32 emits Core Metadata 2.5, which Twine 6.2 cannot validate yet.
+requires = ["hatchling>=1.27,<1.32"]
+build-backend = "hatchling.build"
+
+[project]
+name = "fhiratwill"
+dynamic = ["version"]
+description = "Deterministic, safety-focused FHIR assembly, terminology binding, and write planning."
+readme = "README.md"
+requires-python = ">=3.11"
+license = "Apache-2.0"
+license-files = ["LICENSE"]
+authors = [{ name = "fhiratwill contributors" }]
+keywords = ["fhir", "hl7", "healthcare", "interoperability", "terminology"]
+classifiers = [
+  "Development Status :: 3 - Alpha",
+  "Intended Audience :: Developers",
+  "Intended Audience :: Healthcare Industry",
+  "License :: OSI Approved :: Apache Software License",
+  "Programming Language :: Python",
+  "Programming Language :: Python :: 3 :: Only",
+  "Programming Language :: Python :: 3.11",
+  "Programming Language :: Python :: 3.12",
+  "Programming Language :: Python :: 3.13",
+  "Typing :: Typed",
+  "Topic :: Scientific/Engineering :: Medical Science Apps.",
+]
+dependencies = [
+  "pydantic>=2.8,<3",
+  "fhir.resources>=8.0,<9",
+  "PyYAML>=6.0,<7",
+]
+
+[project.optional-dependencies]
+dev = [
+  "build>=1.2,<2",
+  "mypy>=1.11,<2",
+  "pytest>=8.3,<9",
+  "pytest-asyncio>=0.24,<2",
+  "ruff>=0.8,<1",
+  "twine>=5.1,<7",
+  "types-PyYAML>=6.0,<7",
+]
+
+[project.urls]
+Homepage = "https://github.com/Safwanmahmoud/fhirbridge"
+Documentation = "https://github.com/Safwanmahmoud/fhirbridge#readme"
+Source = "https://github.com/Safwanmahmoud/fhirbridge"
+Issues = "https://github.com/Safwanmahmoud/fhirbridge/issues"
+
+[tool.hatch.build.targets.wheel]
+packages = ["src/fhiratwill"]
+
+[tool.hatch.version]
+path = "src/fhiratwill/__init__.py"
+
+[tool.hatch.build.targets.sdist]
+include = ["/src", "/tests", "/README.md", "/LICENSE", "/CHANGELOG.md", "/CONTRIBUTING.md", "/SECURITY.md"]
+
+[tool.hatch.build]
+include = ["src/fhiratwill/**/*.py", "src/fhiratwill/**/*.yaml", "src/fhiratwill/py.typed"]
+
+[tool.pytest.ini_options]
+testpaths = ["tests"]
+asyncio_mode = "auto"
+addopts = "-q --strict-config --strict-markers"
+
+[tool.ruff]
+line-length = 100
+target-version = "py311"
+src = ["src", "tests"]
+
+[tool.ruff.lint]
+select = ["E", "F", "W", "I", "B", "UP", "S", "C4", "SIM", "RUF", "ASYNC"]
+ignore = ["S101"]
+
+[tool.ruff.lint.per-file-ignores]
+"tests/**" = ["S105", "S106", "S107"]
+
+[tool.ruff.lint.isort]
+known-first-party = ["fhiratwill", "tests"]
+
+[tool.mypy]
+python_version = "3.11"
+strict = true
+files = ["src", "tests"]
+warn_unreachable = true
+warn_unused_ignores = true
+show_error_codes = true
+
+[[tool.mypy.overrides]]
+module = ["fhir.resources.*", "fhir_core.*"]
+ignore_missing_imports = true