fhir4ds-v2 0.0.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (628) hide show
  1. fhir4ds_v2-0.0.1/.gitignore +86 -0
  2. fhir4ds_v2-0.0.1/LICENSE +619 -0
  3. fhir4ds_v2-0.0.1/NOTICE +26 -0
  4. fhir4ds_v2-0.0.1/PKG-INFO +214 -0
  5. fhir4ds_v2-0.0.1/README.md +174 -0
  6. fhir4ds_v2-0.0.1/fhir4ds/__init__.py +60 -0
  7. fhir4ds_v2-0.0.1/fhir4ds/connection.py +61 -0
  8. fhir4ds_v2-0.0.1/fhir4ds/core.py +95 -0
  9. fhir4ds_v2-0.0.1/fhir4ds/cql/__init__.py +540 -0
  10. fhir4ds_v2-0.0.1/fhir4ds/cql/dependency/__init__.py +25 -0
  11. fhir4ds_v2-0.0.1/fhir4ds/cql/dependency/cache.py +58 -0
  12. fhir4ds_v2-0.0.1/fhir4ds/cql/dependency/errors.py +6 -0
  13. fhir4ds_v2-0.0.1/fhir4ds/cql/dependency/resolver.py +399 -0
  14. fhir4ds_v2-0.0.1/fhir4ds/cql/dependency/types.py +74 -0
  15. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/__init__.py +10 -0
  16. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/data/ucum_minimal.txt +58 -0
  17. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/extension.py +128 -0
  18. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/extensions/.gitkeep +0 -0
  19. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/extensions/cql.duckdb_extension +0 -0
  20. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/macros/__init__.py +64 -0
  21. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/macros/aggregate.py +50 -0
  22. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/macros/audit.py +132 -0
  23. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/macros/conversion.py +36 -0
  24. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/macros/datetime.py +65 -0
  25. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/macros/list.py +85 -0
  26. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/macros/logical.py +69 -0
  27. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/macros/math.py +56 -0
  28. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/macros/string.py +81 -0
  29. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/tests/__init__.py +1 -0
  30. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/tests/integration/__init__.py +0 -0
  31. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/tests/integration/test_fhir_integration.py +431 -0
  32. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/tests/test_age_udfs.py +335 -0
  33. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/tests/test_arrow_udfs.py +166 -0
  34. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/tests/test_audit_macros.py +197 -0
  35. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/tests/test_clinical_udfs.py +323 -0
  36. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/tests/test_datetime_udfs.py +410 -0
  37. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/tests/test_interval_udfs.py +488 -0
  38. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/tests/test_list_udfs.py +304 -0
  39. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/tests/test_macros_tier1.py +332 -0
  40. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/tests/test_quantity_udf.py +494 -0
  41. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/tests/test_ratio_udfs.py +321 -0
  42. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/tests/test_system_resolver.py +85 -0
  43. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/tests/test_valueset_udf.py +588 -0
  44. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/tests/test_variable_udf.py +41 -0
  45. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/udf/__init__.py +25 -0
  46. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/udf/age.py +323 -0
  47. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/udf/aggregate.py +103 -0
  48. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/udf/clinical.py +430 -0
  49. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/udf/datetime.py +586 -0
  50. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/udf/interval.py +658 -0
  51. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/udf/list.py +276 -0
  52. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/udf/logical.py +126 -0
  53. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/udf/math.py +113 -0
  54. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/udf/quantity.py +463 -0
  55. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/udf/ratio.py +127 -0
  56. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/udf/string.py +145 -0
  57. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/udf/system_resolver.py +102 -0
  58. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/udf/valueset.py +483 -0
  59. fhir4ds_v2-0.0.1/fhir4ds/cql/duckdb/udf/variable.py +114 -0
  60. fhir4ds_v2-0.0.1/fhir4ds/cql/errors.py +187 -0
  61. fhir4ds_v2-0.0.1/fhir4ds/cql/evaluator/__init__.py +5 -0
  62. fhir4ds_v2-0.0.1/fhir4ds/cql/evaluator/context.py +118 -0
  63. fhir4ds_v2-0.0.1/fhir4ds/cql/library/__init__.py +15 -0
  64. fhir4ds_v2-0.0.1/fhir4ds/cql/library/context.py +11 -0
  65. fhir4ds_v2-0.0.1/fhir4ds/cql/library/loader.py +11 -0
  66. fhir4ds_v2-0.0.1/fhir4ds/cql/library/resolver.py +11 -0
  67. fhir4ds_v2-0.0.1/fhir4ds/cql/loader/__init__.py +5 -0
  68. fhir4ds_v2-0.0.1/fhir4ds/cql/loader/fhir_loader.py +387 -0
  69. fhir4ds_v2-0.0.1/fhir4ds/cql/parser/__init__.py +67 -0
  70. fhir4ds_v2-0.0.1/fhir4ds/cql/parser/ast_nodes.py +1380 -0
  71. fhir4ds_v2-0.0.1/fhir4ds/cql/parser/lexer.py +1315 -0
  72. fhir4ds_v2-0.0.1/fhir4ds/cql/parser/parser.py +2647 -0
  73. fhir4ds_v2-0.0.1/fhir4ds/cql/paths.py +12 -0
  74. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/cql/FHIRHelpers.cql +711 -0
  75. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/cql/QICoreCommon.cql +648 -0
  76. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/cql/Status.cql +150 -0
  77. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/AllergyIntolerance.json +2119 -0
  78. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/CommunicationRequest.json +1991 -0
  79. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/Condition.json +2464 -0
  80. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/Coverage.json +2439 -0
  81. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/DeviceRequest.json +2631 -0
  82. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/DiagnosticReport.json +2039 -0
  83. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/Encounter.json +4141 -0
  84. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/Immunization.json +3557 -0
  85. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/MedicationAdministration.json +2484 -0
  86. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/MedicationDispense.json +2613 -0
  87. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/MedicationRequest.json +3646 -0
  88. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/Observation.json +3509 -0
  89. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/Patient.json +2713 -0
  90. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/Procedure.json +2873 -0
  91. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/ServiceRequest.json +3047 -0
  92. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/Task.json +3777 -0
  93. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/choice_type_prefixes.json +4 -0
  94. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/column_mappings.json +21 -0
  95. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/fhir/r4/fhir_type_mappings.json +57 -0
  96. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/profiles/extension_paths.json +8 -0
  97. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/profiles/qicore-profiles.json +227 -0
  98. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/AllergyIntolerance.json +2119 -0
  99. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/CommunicationRequest.json +1991 -0
  100. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/Condition.json +2464 -0
  101. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/Coverage.json +2439 -0
  102. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/DeviceRequest.json +2631 -0
  103. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/DiagnosticReport.json +2039 -0
  104. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/Encounter.json +4141 -0
  105. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/Immunization.json +3557 -0
  106. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/MedicationAdministration.json +2484 -0
  107. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/MedicationDispense.json +2613 -0
  108. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/MedicationRequest.json +3646 -0
  109. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/Observation.json +3509 -0
  110. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/Patient.json +2713 -0
  111. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/Procedure.json +2873 -0
  112. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/ServiceRequest.json +3047 -0
  113. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/Task.json +3777 -0
  114. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/choice_type_prefixes.json +4 -0
  115. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/column_mappings.json +21 -0
  116. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/fhir_type_mappings.json +57 -0
  117. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/fhir-r4-4.0.1/metadata.json +9 -0
  118. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/qicore-4.1.1/metadata.json +9 -0
  119. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/qicore-4.1.1/model_properties.json +29 -0
  120. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/qicore-4.1.1/qicore-profiles.json +226 -0
  121. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/qicore-6.0.0/metadata.json +6 -0
  122. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/us-core-3.1.1/extension_paths.json +10 -0
  123. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/us-core-3.1.1/metadata.json +9 -0
  124. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/schema/us-core-6.1.0/metadata.json +6 -0
  125. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/terminology/codesystem_prefixes.json +12 -0
  126. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/terminology/component_codes.json +15 -0
  127. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/terminology/fluent_function_stubs.json +12 -0
  128. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/terminology/standard_libraries.json +8 -0
  129. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/terminology/status_filters.json +254 -0
  130. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/terminology/terminology_property_defaults.json +29 -0
  131. fhir4ds_v2-0.0.1/fhir4ds/cql/resources/terminology/valueset_prefixes.json +9 -0
  132. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/__init__.py +0 -0
  133. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/fixtures/__init__.py +1 -0
  134. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/fixtures/patients.json +18 -0
  135. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/fixtures/test_data.py +56 -0
  136. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/integration/__init__.py +0 -0
  137. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/integration/test_cms124_v2.py +560 -0
  138. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/integration/test_cms139_v2.py +589 -0
  139. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/integration/test_cms144_v2.py +581 -0
  140. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/integration/test_cms165_v2.py +580 -0
  141. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/integration/test_correctness.py +148 -0
  142. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/integration/test_fluent_functions.py +568 -0
  143. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/integration/test_join_generation.py +140 -0
  144. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/integration/test_smoke_ci_gate.py +80 -0
  145. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/.gitkeep +2 -0
  146. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/CQL_TESTS_README.md +222 -0
  147. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/__init__.py +0 -0
  148. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/.github/python/requirements.txt +1 -0
  149. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/.github/python/xsd_validate.py +31 -0
  150. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/.github/workflows/xsd_validation.yaml +16 -0
  151. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/CHANGE_MANAGEMENT.md +131 -0
  152. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/LICENSE +201 -0
  153. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/README.md +23 -0
  154. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/tests/cql/CqlAggregateFunctionsTest.xml +313 -0
  155. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/tests/cql/CqlAggregateTest.xml +107 -0
  156. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/tests/cql/CqlArithmeticFunctionsTest.xml +996 -0
  157. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/tests/cql/CqlComparisonOperatorsTest.xml +856 -0
  158. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/tests/cql/CqlConditionalOperatorsTest.xml +121 -0
  159. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/tests/cql/CqlDateTimeOperatorsTest.xml +1796 -0
  160. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/tests/cql/CqlErrorsAndMessagingOperatorsTest.xml +28 -0
  161. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/tests/cql/CqlIntervalOperatorsTest.xml +2183 -0
  162. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/tests/cql/CqlListOperatorsTest.xml +1159 -0
  163. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/tests/cql/CqlLogicalOperatorsTest.xml +216 -0
  164. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/tests/cql/CqlNullologicalOperatorsTest.xml +127 -0
  165. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/tests/cql/CqlQueryTests.xml +74 -0
  166. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/tests/cql/CqlStringOperatorsTest.xml +463 -0
  167. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/tests/cql/CqlTypeOperatorsTest.xml +218 -0
  168. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/tests/cql/CqlTypesTest.xml +227 -0
  169. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/tests/cql/ValueLiteralsAndSelectors.xml +433 -0
  170. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/cql-tests/tests/testSchema.xsd +264 -0
  171. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/test_cql_compliance.py +469 -0
  172. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/official/test_loader.py +382 -0
  173. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/test_errors.py +247 -0
  174. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/test_evaluator.py +102 -0
  175. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/translator/__init__.py +0 -0
  176. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/translator/test_patient_scalar_join.py +244 -0
  177. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/unit/__init__.py +0 -0
  178. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/unit/_archived_v1/.pytest_skip +0 -0
  179. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/unit/_archived_v1/test_aggregate_clause.py +523 -0
  180. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/unit/_archived_v1/test_constructors.py +562 -0
  181. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/unit/_archived_v1/test_date_component.py +157 -0
  182. fhir4ds_v2-0.0.1/fhir4ds/cql/tests/unit/_archived_v1/test_datetime_precision_translator.py +109 -0
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  555. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/compliance/r4/testTail.json +39 -0
  556. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/compliance/r4/testTake.json +119 -0
  557. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/compliance/r4/testToChars.json +23 -0
  558. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/compliance/r4/testToDecimal.json +87 -0
  559. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/compliance/r4/testToInteger.json +87 -0
  560. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/compliance/r4/testToString.json +87 -0
  561. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/compliance/r4/testToday.json +39 -0
  562. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/compliance/r4/testTrace.json +39 -0
  563. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/compliance/r4/testTrim.json +103 -0
  564. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/compliance/r4/testTruncate.json +55 -0
  565. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/compliance/r4/testType.json +487 -0
  566. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/compliance/r4/testTypes.json +1571 -0
  567. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/compliance/r4/testUnion.json +183 -0
  568. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/compliance/r4/testVariables.json +71 -0
  569. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/compliance/r4/testWhere.json +71 -0
  570. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/compliance/r4/tests-fhir-r4.xml +1544 -0
  571. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/fixtures/observation.json +138 -0
  572. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/fixtures/patient.json +150 -0
  573. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/integration/__init__.py +1 -0
  574. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/unit/__init__.py +1 -0
  575. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/unit/test_extension_fn.py +199 -0
  576. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/unit/test_fhirpathpy_datetime.py +197 -0
  577. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/unit/test_new_functions.py +347 -0
  578. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/unit/test_resolve.py +299 -0
  579. fhir4ds_v2-0.0.1/fhir4ds/fhirpath/tests/unit/test_value_functions.py +218 -0
  580. fhir4ds_v2-0.0.1/fhir4ds/measure.py +46 -0
  581. fhir4ds_v2-0.0.1/fhir4ds/viewdef/__init__.py +50 -0
  582. fhir4ds_v2-0.0.1/fhir4ds/viewdef/constants.py +427 -0
  583. fhir4ds_v2-0.0.1/fhir4ds/viewdef/errors.py +168 -0
  584. fhir4ds_v2-0.0.1/fhir4ds/viewdef/generator.py +767 -0
  585. fhir4ds_v2-0.0.1/fhir4ds/viewdef/join.py +243 -0
  586. fhir4ds_v2-0.0.1/fhir4ds/viewdef/parser.py +405 -0
  587. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/__init__.py +1 -0
  588. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/integration/__init__.py +1 -0
  589. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/integration/test_duckdb.py +804 -0
  590. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/basic.json +496 -0
  591. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/collection.json +244 -0
  592. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/combinations.json +256 -0
  593. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/constant.json +331 -0
  594. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/constant_types.json +1032 -0
  595. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/fhirpath.json +412 -0
  596. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/fhirpath_numbers.json +103 -0
  597. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/fn_boundary.json +362 -0
  598. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/fn_empty.json +57 -0
  599. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/fn_extension.json +173 -0
  600. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/fn_first.json +77 -0
  601. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/fn_join.json +106 -0
  602. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/fn_oftype.json +111 -0
  603. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/fn_reference_keys.json +109 -0
  604. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/foreach.json +832 -0
  605. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/logic.json +125 -0
  606. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/repeat.json +519 -0
  607. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/row_index.json +698 -0
  608. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/union.json +842 -0
  609. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/validate.json +99 -0
  610. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/view_resource.json +95 -0
  611. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/spec_tests/where.json +279 -0
  612. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/test_spec_compliance.py +803 -0
  613. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/unit/__init__.py +1 -0
  614. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/unit/test_columns.py +215 -0
  615. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/unit/test_constants.py +377 -0
  616. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/unit/test_foreach.py +257 -0
  617. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/unit/test_generator.py +291 -0
  618. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/unit/test_join.py +401 -0
  619. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/unit/test_parser.py +616 -0
  620. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/unit/test_security.py +98 -0
  621. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/unit/test_union.py +359 -0
  622. fhir4ds_v2-0.0.1/fhir4ds/viewdef/tests/unit/test_where.py +279 -0
  623. fhir4ds_v2-0.0.1/fhir4ds/viewdef/types.py +381 -0
  624. fhir4ds_v2-0.0.1/fhir4ds/viewdef/union.py +248 -0
  625. fhir4ds_v2-0.0.1/fhir4ds/viewdef/unnest.py +250 -0
  626. fhir4ds_v2-0.0.1/fhir4ds/viewdef/utils.py +38 -0
  627. fhir4ds_v2-0.0.1/hatch_build.py +112 -0
  628. fhir4ds_v2-0.0.1/pyproject.toml +119 -0
fhir4ds_v2-0.0.1/.gitignore ADDED
@@ -0,0 +1,86 @@
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+ # Python
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+ __pycache__/
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+ *.py[cod]
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+ *$py.class
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+ *.so
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+ .Python
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+ build/
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+ develop-eggs/
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+ dist/
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+ downloads/
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+ eggs/
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+ .eggs/
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+ lib/
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+ lib64/
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+ parts/
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+ sdist/
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+ var/
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+ wheels/
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+ *.egg-info/
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+ .installed.cfg
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+ *.egg
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+
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+ # Virtual environments
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+ .venv/
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+ venv/
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+ ENV/
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+ env/
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+
29
+ # Backup files
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+ *.bak
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+
32
+ # Testing
33
+ .pytest_cache/
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+ .coverage
35
+ htmlcov/
36
+ .tox/
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+ .nox/
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+ coverage.xml
39
+ *.cover
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+ .hypothesis/
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+
42
+ # Benchmarks
43
+ .benchmarks/
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+
45
+ # IDE
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+ .vscode/
47
+ .idea/
48
+ *.swp
49
+ *.swo
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+ *~
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+
52
+ # Jupyter
53
+ .ipynb_checkpoints/
54
+
55
+ # Claude Code / OMC
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+ .claude/
57
+ .omc/
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+
59
+ # Rust / Maturin
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+ target/
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+ Cargo.lock
62
+ *.rustfmt.toml
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+
64
+ # OS
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+ .DS_Store
66
+ Thumbs.db
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+
68
+ # Logs
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+ *.log
70
+ logs/
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+
72
+ # Local config
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+ .env
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+ .env.local
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+ *.local
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+
77
+ # Docusaurus website
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+ web/website/node_modules/
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+ web/wasm-demo/node_modules/
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+ web/website/.docusaurus/
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+
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+ # Other
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+ .tmp/
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+ .gitignore
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+ benchmarking/parser_audit/
86
+ fhir4ds-private/