fhir-sheets 1.2.1__tar.gz → 1.3.0__tar.gz

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  1. {fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/PKG-INFO +4 -2
  2. {fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/pyproject.toml +6 -2
  3. {fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/src/fhir_sheets/core/conversion.py +13 -1
  4. {fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/src/fhir_sheets/core/fhir_formatting.py +1 -1
  5. {fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/LICENSE +0 -0
  6. {fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/README.md +0 -0
  7. {fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/src/fhir_sheets/__init__.py +0 -0
  8. {fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/src/fhir_sheets/cli/__init__.py +0 -0
  9. {fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/src/fhir_sheets/cli/main.py +0 -0
  10. {fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/src/fhir_sheets/core/__init__.py +0 -0
  11. {fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/src/fhir_sheets/core/model/cohort_data_entity.py +0 -0
  12. {fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/src/fhir_sheets/core/model/resource_definition_entity.py +0 -0
  13. {fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/src/fhir_sheets/core/model/resource_link_entity.py +0 -0
  14. {fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/src/fhir_sheets/core/read_input.py +0 -0
  15. {fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/src/fhir_sheets/core/special_values.py +0 -0
  16. {fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/src/fhir_sheets/core/util.py +0 -0
{fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/PKG-INFO RENAMED
@@ -1,12 +1,14 @@
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- Metadata-Version: 2.3
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+ Metadata-Version: 2.4
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  Name: fhir-sheets
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- Version: 1.2.1
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+ Version: 1.3.0
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  Summary: FhirSheets is a command-line tool that reads an Excel file in FHIR cohort format and generates FHIR bundle JSON files from it. Each row in the template Excel file is used to create an individual JSON file, outputting them to a specified folder.
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+ License-File: LICENSE
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  Author: Michael Riley
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  Author-email: Michael.Riley@gtri.gatech.edu
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  Requires-Python: >=3.13
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  Classifier: Programming Language :: Python :: 3
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  Classifier: Programming Language :: Python :: 3.13
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+ Classifier: Programming Language :: Python :: 3.14
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  Requires-Dist: et-xmlfile (==1.1.0)
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  Requires-Dist: jsonpath-ng (==1.6.1)
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  Requires-Dist: openpyxl (==3.1.5)
{fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/pyproject.toml RENAMED
@@ -1,10 +1,11 @@
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  [tool.poetry]
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  name = "fhir-sheets"
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- version = "1.2.1"
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+ version = "1.3.0"
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  description = "FhirSheets is a command-line tool that reads an Excel file in FHIR cohort format and generates FHIR bundle JSON files from it. Each row in the template Excel file is used to create an individual JSON file, outputting them to a specified folder."
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  authors = ["Michael Riley <Michael.Riley@gtri.gatech.edu>"]
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  packages = [{include = "fhir_sheets", from = "src"}]
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  readme = "README.md"
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+ long-description-content-type = "text/markdown"
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  [tool.poetry.dependencies]
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  python = ">=3.13" # Specify the compatible Python version here
@@ -16,4 +17,7 @@ ply = "3.11"
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  [build-system]
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  requires = ["poetry-core"]
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- build-backend = "poetry.core.masonry.api"
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+ build-backend = "poetry.core.masonry.api"
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+
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+ [pytest]
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+ testpaths = ["tests"]
{fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/src/fhir_sheets/core/conversion.py RENAMED
@@ -32,6 +32,13 @@ def initialize_bundle():
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  root_bundle = {}
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  root_bundle['resourceType'] = 'Bundle'
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  root_bundle['id'] = str(uuid.uuid4())
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+ root_bundle['meta'] = {
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+ 'security': [{
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+ 'system': 'http://terminology.hl7.org/CodeSystem/v3-ActReason',
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+ 'code': 'HTEST',
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+ 'display': 'test health data'
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+ }]
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+ }
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  root_bundle['type'] = 'transaction'
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  root_bundle['entry'] = []
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  return root_bundle
@@ -43,7 +50,12 @@ def initialize_resource(resource_definition):
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  initial_resource['id'] = str(uuid.uuid4()).strip()
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  if resource_definition.profiles:
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  initial_resource['meta'] = {
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- 'profile': resource_definition.profiles
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+ 'profile': resource_definition.profiles,
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+ 'security': [{
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+ 'system': 'http://terminology.hl7.org/CodeSystem/v3-ActReason',
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+ 'code': 'HTEST',
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+ 'display': 'test health data'
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+ }]
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  }
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  return initial_resource
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{fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/src/fhir_sheets/core/fhir_formatting.py RENAMED
@@ -196,7 +196,7 @@ def parse_flexible_address(address):
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  country_pattern = r'(?:\s*(?P<country>[\w\s]+|))?$'
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  # Compile the full pattern to match the postal code, state, and country
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- full_pattern = rf'^(?P<line>.*?)\^(?P<city>.*?)\^(?P<district>.*?)\^{state_pattern}\^{postal_code_pattern}\^{country_pattern}'
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+ full_pattern = rf'^(?P<line>.*?)\^(?P<city>.*?)\^(?P<district>.*?)\^{postal_code_pattern}\^{state_pattern}\^{country_pattern}'
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  match = re.search(full_pattern, address)
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{fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/LICENSE RENAMED
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{fhir_sheets-1.2.1 → fhir_sheets-1.3.0}/README.md RENAMED
File without changes