fhir-reada 0.1.1__tar.gz → 0.1.2__tar.gz

{fhir_reada-0.1.1 → fhir_reada-0.1.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: fhir-reada
-Version: 0.1.1
+Version: 0.1.2
 Summary: A FHIR cohort extractor and de-identification tool for clinical research.
 Author-email: Tobenna Oduah <tjlite81@gmail.com>
 License: MIT

fhir_reada-0.1.2/fhir_reada/__init__.py

@@ -0,0 +1 @@
+__version__ = "0.1.2"

fhir_reada-0.1.2/fhir_reada/deid_utils.py

@@ -0,0 +1,34 @@
+from hashlib import sha256
+from datetime import datetime
+
+def get_birth_year_and_age(birth_date_str):
+    try:
+        birth = datetime.strptime(birth_date_str, "%Y-%m-%d")
+        today = datetime.today()
+        age = today.year - birth.year - ((today.month, today.day) < (birth.month, birth.day))
+        birth_year = birth.year
+        return (
+            "90+" if age >= 90 else str(birth_year),
+            "90+" if age >= 90 else str(age)
+        )
+    except Exception:
+        return ("UNKNOWN", "UNKNOWN")
+
+def deidentify_patient_bundle(bundle):
+    patient = bundle["patient"]
+    conditions = bundle["conditions"]
+    observations = bundle["observations"]
+
+    patient_id = patient.get("id", "")
+    pseudo_id = sha256(patient_id.encode()).hexdigest()
+
+    birth_year, age = get_birth_year_and_age(patient.get("birthDate"))
+
+    return {
+        "id": pseudo_id,
+        "gender": patient.get("gender"),
+        "birthYear": birth_year,
+        "age": age,
+        "conditions": "; ".join(conditions) if conditions else "None",
+        "observations": "; ".join(observations) if observations else "None"
+    }

{fhir_reada-0.1.1 → fhir_reada-0.1.2}/fhir_reada.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: fhir-reada
-Version: 0.1.1
+Version: 0.1.2
 Summary: A FHIR cohort extractor and de-identification tool for clinical research.
 Author-email: Tobenna Oduah <tjlite81@gmail.com>
 License: MIT

{fhir_reada-0.1.1 → fhir_reada-0.1.2}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "fhir-reada"
-version = "0.1.1"
+version = "0.1.2"
 description = "A FHIR cohort extractor and de-identification tool for clinical research."
 readme = "README.md"
 authors = [{name = "Tobenna Oduah", email = "tjlite81@gmail.com"}]

fhir_reada-0.1.1/fhir_reada/__init__.py

@@ -1 +0,0 @@
-__version__ = "0.1.1"

fhir_reada-0.1.1/fhir_reada/deid_utils.py

@@ -1,17 +0,0 @@
-from hashlib import sha256
-
-def deidentify_patient_bundle(bundle):
-    patient = bundle["patient"]
-    conditions = bundle["conditions"]
-    observations = bundle["observations"]
-
-    patient_id = patient.get("id", "")
-    pseudo_id = sha256(patient_id.encode()).hexdigest()[:10]
-
-    return {
-        "id": pseudo_id,
-        "gender": patient.get("gender"),
-        "birthDate": patient.get("birthDate"),
-        "conditions": "; ".join(conditions) if conditions else "None",
-        "observations": "; ".join(observations) if observations else "None"
-    }