fhir-reada 0.1.0__tar.gz → 0.1.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- fhir_reada-0.1.1/PKG-INFO +86 -0
- fhir_reada-0.1.1/fhir_reada/__init__.py +1 -0
- fhir_reada-0.1.1/fhir_reada.egg-info/PKG-INFO +86 -0
- {fhir_reada-0.1.0 → fhir_reada-0.1.1}/pyproject.toml +2 -1
- fhir_reada-0.1.0/PKG-INFO +0 -9
- fhir_reada-0.1.0/fhir_reada/__init__.py +0 -1
- fhir_reada-0.1.0/fhir_reada.egg-info/PKG-INFO +0 -9
- {fhir_reada-0.1.0 → fhir_reada-0.1.1}/LICENSE +0 -0
- {fhir_reada-0.1.0 → fhir_reada-0.1.1}/README.md +0 -0
- {fhir_reada-0.1.0 → fhir_reada-0.1.1}/fhir_reada/cli.py +0 -0
- {fhir_reada-0.1.0 → fhir_reada-0.1.1}/fhir_reada/cohort_builder.py +0 -0
- {fhir_reada-0.1.0 → fhir_reada-0.1.1}/fhir_reada/deid_utils.py +0 -0
- {fhir_reada-0.1.0 → fhir_reada-0.1.1}/fhir_reada/exporter.py +0 -0
- {fhir_reada-0.1.0 → fhir_reada-0.1.1}/fhir_reada/fhir_connector.py +0 -0
- {fhir_reada-0.1.0 → fhir_reada-0.1.1}/fhir_reada.egg-info/SOURCES.txt +0 -0
- {fhir_reada-0.1.0 → fhir_reada-0.1.1}/fhir_reada.egg-info/dependency_links.txt +0 -0
- {fhir_reada-0.1.0 → fhir_reada-0.1.1}/fhir_reada.egg-info/entry_points.txt +0 -0
- {fhir_reada-0.1.0 → fhir_reada-0.1.1}/fhir_reada.egg-info/requires.txt +0 -0
- {fhir_reada-0.1.0 → fhir_reada-0.1.1}/fhir_reada.egg-info/top_level.txt +0 -0
- {fhir_reada-0.1.0 → fhir_reada-0.1.1}/setup.cfg +0 -0
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Metadata-Version: 2.1
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Name: fhir-reada
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Version: 0.1.1
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Summary: A FHIR cohort extractor and de-identification tool for clinical research.
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Author-email: Tobenna Oduah <tjlite81@gmail.com>
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License: MIT
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Description-Content-Type: text/markdown
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License-File: LICENSE
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Requires-Dist: requests
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Requires-Dist: python-dateutil
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# FHIR-READA
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**FHIR Research Extractor And De-identified Analyzer**
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A Python CLI tool for extracting, de-identifying, and exporting patient data from FHIR servers — built for research teams, clinicians, and medical institutions.
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---
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## 🔍 Features
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- Filter patients by age range and diagnosis
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- Extract from any FHIR-compliant server
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- Fetch Conditions and Observations
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- Automatically de-identify patient IDs
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- Export results to CSV
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- Easy-to-use CLI with flexible filters
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---
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## 💻 Installation
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**From PyPI**
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```bash
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pip install fhir-reada
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```
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**From Source (for development or testing)**
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```bash
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git clone https://github.com/TOduah/fhir-reada.git
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cd fhir-reada
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pip install -e .
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```
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---
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## 🚀 Usage (CLI)
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```bash
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fhir-reada --url https://hapi.fhir.org/baseR4 --min-age 25 --max-age 40 --diagnosis diabetes --out output.csv
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```
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---
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## ⚙️ CLI Options
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| Option | Description |
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|----------------|------------------------------------------------------|
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| `--url` | FHIR base URL (e.g. `https://hapi.fhir.org/baseR4`) |
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| `--min-age` | Minimum age for cohort (e.g. `25`) |
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| `--max-age` | Maximum age for cohort (e.g. `40`) |
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| `--diagnosis` | Diagnosis keyword (optional, e.g. `diabetes`) |
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| `--out` | Output filename for CSV export |
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---
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## 🏥 Who Is This For?
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- Research institutions running clinical studies
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- Hospital data science or IT departments
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- Medical schools teaching FHIR and analytics
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- Independent developers working with public or private FHIR APIs
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---
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## 📄 License
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This project is licensed under the [MIT License](LICENSE).
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---
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## 💬 Author
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Built by [Tobenna Oduah](https://github.com/toduah).
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__version__ = "0.1.1"
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Metadata-Version: 2.1
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Name: fhir-reada
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Version: 0.1.1
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Summary: A FHIR cohort extractor and de-identification tool for clinical research.
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Author-email: Tobenna Oduah <tjlite81@gmail.com>
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License: MIT
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Description-Content-Type: text/markdown
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License-File: LICENSE
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Requires-Dist: requests
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Requires-Dist: python-dateutil
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# FHIR-READA
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**FHIR Research Extractor And De-identified Analyzer**
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A Python CLI tool for extracting, de-identifying, and exporting patient data from FHIR servers — built for research teams, clinicians, and medical institutions.
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---
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## 🔍 Features
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- Filter patients by age range and diagnosis
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- Extract from any FHIR-compliant server
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+
- Fetch Conditions and Observations
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+
- Automatically de-identify patient IDs
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- Export results to CSV
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+
- Easy-to-use CLI with flexible filters
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+
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---
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## 💻 Installation
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**From PyPI**
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```bash
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pip install fhir-reada
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```
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**From Source (for development or testing)**
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```bash
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git clone https://github.com/TOduah/fhir-reada.git
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cd fhir-reada
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pip install -e .
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```
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---
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## 🚀 Usage (CLI)
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```bash
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fhir-reada --url https://hapi.fhir.org/baseR4 --min-age 25 --max-age 40 --diagnosis diabetes --out output.csv
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```
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---
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## ⚙️ CLI Options
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| Option | Description |
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|----------------|------------------------------------------------------|
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| `--url` | FHIR base URL (e.g. `https://hapi.fhir.org/baseR4`) |
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| `--min-age` | Minimum age for cohort (e.g. `25`) |
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| `--max-age` | Maximum age for cohort (e.g. `40`) |
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| `--diagnosis` | Diagnosis keyword (optional, e.g. `diabetes`) |
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| `--out` | Output filename for CSV export |
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---
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## 🏥 Who Is This For?
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- Research institutions running clinical studies
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- Hospital data science or IT departments
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- Medical schools teaching FHIR and analytics
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- Independent developers working with public or private FHIR APIs
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---
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## 📄 License
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This project is licensed under the [MIT License](LICENSE).
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---
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## 💬 Author
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Built by [Tobenna Oduah](https://github.com/toduah).
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[project]
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name = "fhir-reada"
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version = "0.1.
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version = "0.1.1"
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description = "A FHIR cohort extractor and de-identification tool for clinical research."
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readme = "README.md"
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authors = [{name = "Tobenna Oduah", email = "tjlite81@gmail.com"}]
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license = {text = "MIT"}
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dependencies = [
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fhir_reada-0.1.0/PKG-INFO
DELETED
@@ -1,9 +0,0 @@
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Metadata-Version: 2.1
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Name: fhir-reada
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Version: 0.1.0
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Summary: A FHIR cohort extractor and de-identification tool for clinical research.
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Author-email: Tobenna Oduah <tjlite81@gmail.com>
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License: MIT
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License-File: LICENSE
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Requires-Dist: requests
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Requires-Dist: python-dateutil
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__version__ = "0.1.0"
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Metadata-Version: 2.1
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Name: fhir-reada
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Version: 0.1.0
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Summary: A FHIR cohort extractor and de-identification tool for clinical research.
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Author-email: Tobenna Oduah <tjlite81@gmail.com>
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License: MIT
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License-File: LICENSE
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Requires-Dist: requests
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Requires-Dist: python-dateutil
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