fetchm2 0.1.2__tar.gz → 0.1.3__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {fetchm2-0.1.2/src/fetchm2.egg-info → fetchm2-0.1.3}/PKG-INFO +2 -2
- {fetchm2-0.1.2 → fetchm2-0.1.3}/README.md +1 -1
- {fetchm2-0.1.2 → fetchm2-0.1.3}/docs/VALIDATION_REPORT.md +11 -1
- {fetchm2-0.1.2 → fetchm2-0.1.3}/pyproject.toml +1 -1
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2/__init__.py +1 -1
- {fetchm2-0.1.2 → fetchm2-0.1.3/src/fetchm2.egg-info}/PKG-INFO +2 -2
- {fetchm2-0.1.2 → fetchm2-0.1.3}/LICENSE +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/MANIFEST.in +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/docs/METADATA_ANALYSIS.md +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/docs/RELEASE_CHECKLIST.md +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/docs/SEQUENCE_DOWNLOAD.md +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/docs/STANDARDIZATION.md +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/environment.yml +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/examples/offline_metadata.tsv +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/examples/test_ncbi_dataset.tsv +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/setup.cfg +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2/analysis.py +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2/audit.py +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2/cli.py +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2/data/__init__.py +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2/data/approved_broad_categories.csv +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2/data/collection_date_reviewed_rules.csv +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2/data/controlled_categories.csv +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2/data/country_mapping.json +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2/data/geography_reviewed_rules.csv +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2/data/host_negative_rules.csv +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2/data/host_synonyms.csv +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2/metadata.py +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2/sequence.py +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2/standardization.py +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2/utils.py +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2.egg-info/SOURCES.txt +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2.egg-info/dependency_links.txt +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2.egg-info/entry_points.txt +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2.egg-info/requires.txt +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/src/fetchm2.egg-info/top_level.txt +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/test.tsv +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/tests/test_cli.py +0 -0
- {fetchm2-0.1.2 → fetchm2-0.1.3}/tests/test_standardization.py +0 -0
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Metadata-Version: 2.4
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Name: fetchm2
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Version: 0.1.
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Version: 0.1.3
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Summary: Standalone comprehensive genome metadata standardization and sequence download toolkit.
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Author-email: Tasnimul Arabi Anik <arabianik987@gmail.com>
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License-Expression: MIT
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```bash
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python -m venv fetchm2-env
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source fetchm2-env/bin/activate
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pip install fetchm2
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pip install fetchm2==0.1.3
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```
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# FetchM2 Validation Report
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Validation date: 2026-05-05
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Current validation target: `fetchm2 0.1.
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Current validation target: `fetchm2 0.1.3`
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## Source Baselines
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- host lineage is bundled for common hosts and optionally enriched with `taxonkit` when installed
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- embeddings/BGE are intentionally not used in production standardization
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- large-scale sequence download was not run during this validation to avoid unnecessary NCBI load
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## Additional 0.1.3 Documentation Validation
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The 0.1.3 patch updates the README installation command to use the pinned current PyPI release:
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```bash
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pip install fetchm2==0.1.3
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```
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No runtime behavior changed from 0.1.2.
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[project]
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name = "fetchm2"
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version = "0.1.
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version = "0.1.3"
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description = "Standalone comprehensive genome metadata standardization and sequence download toolkit."
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readme = "README.md"
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requires-python = ">=3.10"
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Metadata-Version: 2.4
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Name: fetchm2
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Version: 0.1.3
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Summary: Standalone comprehensive genome metadata standardization and sequence download toolkit.
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Author-email: Tasnimul Arabi Anik <arabianik987@gmail.com>
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License-Expression: MIT
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```bash
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python -m venv fetchm2-env
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source fetchm2-env/bin/activate
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pip install fetchm2
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pip install fetchm2==0.1.3
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```
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