ferromic 0.1.1__tar.gz → 0.1.2__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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- {ferromic-0.1.1 → ferromic-0.1.2}/.github/workflows/benchmarks.yml +53 -6
- ferromic-0.1.2/.github/workflows/publish.yml +168 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/Cargo.lock +71 -71
- {ferromic-0.1.1 → ferromic-0.1.2}/Cargo.toml +2 -2
- {ferromic-0.1.1 → ferromic-0.1.2}/PKG-INFO +2 -2
- {ferromic-0.1.1 → ferromic-0.1.2}/pyproject.toml +3 -2
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/CDS_plots.py +99 -15
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/fixed.py +1 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/fst_violins.py +1 -1
- {ferromic-0.1.1 → ferromic-0.1.2}/.cargo/config.toml +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/.github/workflows/CI.yml +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/.github/workflows/fixer.yml +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/.github/workflows/rust.yml +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/.gitignore +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/LICENSE.md +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/README.md +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/benches/pca.rs +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/cds/axt_to_phy.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/cds/combine_phy.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/cds/omega_test.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/data/README.md +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/data/balanced_recurrence_results.tsv +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/data/callset.tsv +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/data/md5sum.txt +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/data/passed_snvs.txt +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/data/significant_heritability_diseases.tsv +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/data/vcf_list.txt +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/deny.toml +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/install.sh +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/phewas/README.md +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/phewas/extra/family.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/phewas/extra/score.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/phewas/iox.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/phewas/models.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/phewas/pheno.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/phewas/pipes.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/phewas/run.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/phewas/test_setup.sh +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/phewas/testing.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/phewas/tests.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/rust-toolchain.toml +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/scripts/check_fixed_sites.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/scripts/deduplicate.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/scripts/dnds.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/scripts/phy_to_fasta.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/README.md +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/lib.rs +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/main.rs +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/merge.rs +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/parse.rs +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/pca.rs +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/process.rs +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/progress.rs +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/pybenches/__init__.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/pybenches/conftest.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/pybenches/test_population_pca_benchmarks.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/pybenches/test_population_statistics_benchmarks.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/pytests/__init__.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/pytests/test_diversity_integration.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/pytests/test_ferromic.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/pytests/test_hudson_fst_integration.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/run_vcf.rs +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/stats.rs +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/tests/filter_tests.rs +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/tests/hudson_fst_tests.rs +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/tests/interval_tests.rs +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/tests/stats_tests.rs +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/src/transcripts.rs +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/CDS_identical_model.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/OR_matrix.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/_inv_common.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/af_pi.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/analyze_activations.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/best_tag.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/category_per_site.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/category_per_site_normed.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/cds_differences.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/conserve_chords.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/conserve_inv_dir.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/cross_violins.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/dist_fst_by_type.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/distance_diversity.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/diversity_dir_inv.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/diversity_scatterplot.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/dnds_kde.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/each_per_site.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/estimators_fst.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/events_rate_diversity.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/forest.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/get_codes.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/imputation_plot.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/infer.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/inv_dir_recur.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/inv_dir_recur_model.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/inv_dir_recur_violins.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/inversion_phewas_report.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/inversion_table.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/length_distribution.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/linked.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/manhattan_phe.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/manhattan_plot.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/matrix_plots.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/middle_vs_flank_fst.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/middle_vs_flank_pi.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/middle_vs_flank_pi_recurrence.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/num_events_diversity.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/orientation_pcs.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/overall_fst_by_type.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/overall_groups_dnds.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/pack_models.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/pairwise_matrix_test.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/per_gene_cds_differences_jackknife.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/permute.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/phelist.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/pls_patch.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/prepare_data_for_infer.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/ranged_volcano.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/recur_conservation.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/recur_diversity.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/region_descriptive.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/regions_plot.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/replicate_plots.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/replicate_stats.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/shuffle_coords.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/snv_list_acaf_download.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/stats_table.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/tagged.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/top_n_pi.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/vcf_snv_list.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/visualize_pca.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/volcano.py +0 -0
- {ferromic-0.1.1 → ferromic-0.1.2}/stats/wald_ci.py +0 -0
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- name: Build ferromic extension module
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run: maturin develop --release
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- name: Run
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--benchmark-only \
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--benchmark-json stats-bench-results.json
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- name: Run PCA benchmarks
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id: run_pca_benchmarks
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--benchmark-json pca-bench-results.json
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if: always() && (hashFiles('bench-results.json') != '' || hashFiles('stats-bench-results.json') != '' || hashFiles('pca-bench-results.json') != '')
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contents: read
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${{ fromJson('[{"runner":"ubuntu-22.04","target":"x86_64","openblas_target":"SANDYBRIDGE"},{"runner":"ubuntu-22.04","target":"x86","openblas_target":"ATOM"},{"runner":"ubuntu-22.04","target":"aarch64","openblas_target":"ARMV8"},{"runner":"ubuntu-22.04","target":"armv7","openblas_target":"ARMV7"},{"runner":"ubuntu-22.04","target":"ppc64le","openblas_target":"POWER9"}]') }}
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with:
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sudo apt-get update
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sudo apt-get install -y build-essential gfortran perl wget
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env:
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with:
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command: publish
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target: ${{ matrix.platform.target }}
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args: --profile release --skip-existing --find-interpreter
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manylinux: auto
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rust-toolchain: nightly
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sccache: false
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if command -v microdnf >/dev/null 2>&1; then
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+
microdnf install -y gcc gcc-c++ gcc-gfortran make perl perl-IPC-Cmd wget
|
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elif command -v dnf >/dev/null 2>&1; then
|
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dnf install -y gcc gcc-c++ gcc-gfortran make perl perl-IPC-Cmd wget
|
|
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elif command -v yum >/dev/null 2>&1; then
|
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yum install -y gcc gcc-c++ gcc-gfortran make perl perl-IPC-Cmd wget
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elif command -v apt-get >/dev/null 2>&1; then
|
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apt-get update
|
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apt-get install -y build-essential gfortran perl wget
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elif command -v apk >/dev/null 2>&1; then
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apk add --no-cache build-base gfortran perl perl-utils wget
|
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|
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fi
|
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perl -MIPC::Cmd -e1 >/dev/null 2>&1 || (wget -O - https://cpanmin.us | perl - --notest IPC::Cmd)
|
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|
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musllinux:
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continue-on-error: true
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runs-on: ${{ matrix.platform.runner }}
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strategy:
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matrix:
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platform: >-
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${{ fromJson('[{"runner":"ubuntu-22.04","target":"x86_64","openblas_target":"SANDYBRIDGE"},{"runner":"ubuntu-22.04","target":"x86","openblas_target":"ATOM"},{"runner":"ubuntu-22.04","target":"aarch64","openblas_target":"ARMV8"},{"runner":"ubuntu-22.04","target":"armv7","openblas_target":"ARMV7"}]') }}
|
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steps:
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- uses: actions/checkout@v4
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- uses: actions/setup-python@v5
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with:
|
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python-version: '3.x'
|
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- name: Publish musllinux wheels to PyPI
|
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uses: PyO3/maturin-action@v1
|
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continue-on-error: true
|
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env:
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MATURIN_PYPI_TOKEN: ${{ secrets.PYPI_API_TOKEN }}
|
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OPENSSL_STATIC: 1
|
|
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|
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OPENSSL_VENDORED: 1
|
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|
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OPENBLAS_TARGET: ${{ matrix.platform.openblas_target }}
|
|
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|
+
with:
|
|
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|
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command: publish
|
|
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|
+
target: ${{ matrix.platform.target }}
|
|
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|
+
args: --profile release --skip-existing --find-interpreter
|
|
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|
+
manylinux: musllinux_1_2
|
|
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|
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rust-toolchain: nightly
|
|
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|
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sccache: false
|
|
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|
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before-script-linux: |
|
|
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|
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if command -v microdnf >/dev/null 2>&1; then
|
|
95
|
+
microdnf install -y gcc gcc-c++ gcc-gfortran make perl perl-IPC-Cmd wget
|
|
96
|
+
elif command -v dnf >/dev/null 2>&1; then
|
|
97
|
+
dnf install -y gcc gcc-c++ gcc-gfortran make perl perl-IPC-Cmd wget
|
|
98
|
+
elif command -v yum >/dev/null 2>&1; then
|
|
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|
+
yum install -y gcc gcc-c++ gcc-gfortran make perl perl-IPC-Cmd wget
|
|
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|
+
elif command -v apt-get >/dev/null 2>&1; then
|
|
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|
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apt-get update
|
|
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|
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apt-get install -y build-essential gfortran perl wget
|
|
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|
+
elif command -v apk >/dev/null 2>&1; then
|
|
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|
+
apk add --no-cache build-base gfortran perl perl-utils wget
|
|
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|
+
fi
|
|
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|
+
perl -MIPC::Cmd -e1 >/dev/null 2>&1 || (wget -O - https://cpanmin.us | perl - --notest IPC::Cmd)
|
|
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|
+
|
|
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|
+
windows:
|
|
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|
+
continue-on-error: true
|
|
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|
+
runs-on: ${{ matrix.platform.runner }}
|
|
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|
+
strategy:
|
|
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|
+
fail-fast: false
|
|
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|
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matrix:
|
|
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|
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platform: >-
|
|
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|
+
${{ fromJson('[{"runner":"windows-latest","target":"x64","vcpkg_triplet":"x64-windows"},{"runner":"windows-latest","target":"x86","vcpkg_triplet":"x86-windows"}]') }}
|
|
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|
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steps:
|
|
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|
+
- uses: actions/checkout@v4
|
|
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|
+
- uses: actions/setup-python@v5
|
|
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|
+
with:
|
|
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|
+
python-version: '3.x'
|
|
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|
+
architecture: ${{ matrix.platform.target }}
|
|
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|
+
- name: Install OpenBLAS dependencies
|
|
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|
+
shell: pwsh
|
|
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|
+
run: |
|
|
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|
+
$vcpkgRoot = Join-Path $Env:USERPROFILE "vcpkg"
|
|
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|
+
if (-Not (Test-Path $vcpkgRoot)) {
|
|
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|
+
git clone https://github.com/microsoft/vcpkg.git $vcpkgRoot
|
|
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|
+
& (Join-Path $vcpkgRoot "bootstrap-vcpkg.bat") -disableMetrics
|
|
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|
+
}
|
|
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|
+
& (Join-Path $vcpkgRoot "vcpkg.exe") install openblas --triplet ${{ matrix.platform.vcpkg_triplet }}
|
|
131
|
+
"VCPKG_ROOT=$vcpkgRoot" | Out-File -FilePath $Env:GITHUB_ENV -Encoding utf8 -Append
|
|
132
|
+
"VCPKG_DEFAULT_TRIPLET=${{ matrix.platform.vcpkg_triplet }}" | Out-File -FilePath $Env:GITHUB_ENV -Encoding utf8 -Append
|
|
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|
+
- name: Publish Windows wheels to PyPI
|
|
134
|
+
uses: PyO3/maturin-action@v1
|
|
135
|
+
continue-on-error: true
|
|
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|
+
env:
|
|
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|
+
MATURIN_PYPI_TOKEN: ${{ secrets.PYPI_API_TOKEN }}
|
|
138
|
+
with:
|
|
139
|
+
command: publish
|
|
140
|
+
target: ${{ matrix.platform.target }}
|
|
141
|
+
args: --profile release --skip-existing --find-interpreter
|
|
142
|
+
rust-toolchain: nightly
|
|
143
|
+
sccache: false
|
|
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|
+
|
|
145
|
+
macos:
|
|
146
|
+
continue-on-error: true
|
|
147
|
+
runs-on: ${{ matrix.platform.runner }}
|
|
148
|
+
strategy:
|
|
149
|
+
fail-fast: false
|
|
150
|
+
matrix:
|
|
151
|
+
platform: >-
|
|
152
|
+
${{ fromJson('[{"runner":"macos-13","target":"x86_64"},{"runner":"macos-14","target":"aarch64"}]') }}
|
|
153
|
+
steps:
|
|
154
|
+
- uses: actions/checkout@v4
|
|
155
|
+
- uses: actions/setup-python@v5
|
|
156
|
+
with:
|
|
157
|
+
python-version: '3.x'
|
|
158
|
+
- name: Publish macOS wheels to PyPI
|
|
159
|
+
uses: PyO3/maturin-action@v1
|
|
160
|
+
continue-on-error: true
|
|
161
|
+
env:
|
|
162
|
+
MATURIN_PYPI_TOKEN: ${{ secrets.PYPI_API_TOKEN }}
|
|
163
|
+
with:
|
|
164
|
+
command: publish
|
|
165
|
+
target: ${{ matrix.platform.target }}
|
|
166
|
+
args: --profile release --skip-existing --find-interpreter
|
|
167
|
+
rust-toolchain: nightly
|
|
168
|
+
sccache: false
|
|
@@ -4,9 +4,9 @@ version = 4
|
|
|
4
4
|
|
|
5
5
|
[[package]]
|
|
6
6
|
name = "addr2line"
|
|
7
|
-
version = "0.
|
|
7
|
+
version = "0.25.1"
|
|
8
8
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
|
9
|
-
checksum = "
|
|
9
|
+
checksum = "1b5d307320b3181d6d7954e663bd7c774a838b8220fe0593c86d9fb09f498b4b"
|
|
10
10
|
dependencies = [
|
|
11
11
|
"gimli",
|
|
12
12
|
]
|
|
@@ -64,9 +64,9 @@ dependencies = [
|
|
|
64
64
|
|
|
65
65
|
[[package]]
|
|
66
66
|
name = "anstyle"
|
|
67
|
-
version = "1.0.
|
|
67
|
+
version = "1.0.13"
|
|
68
68
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
|
69
|
-
checksum = "
|
|
69
|
+
checksum = "5192cca8006f1fd4f7237516f40fa183bb07f8fbdfedaa0036de5ea9b0b45e78"
|
|
70
70
|
|
|
71
71
|
[[package]]
|
|
72
72
|
name = "anstyle-parse"
|
|
@@ -146,9 +146,9 @@ checksum = "c08606f8c3cbf4ce6ec8e28fb0014a2c086708fe954eaa885384a6165172e7e8"
|
|
|
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146
|
|
|
147
147
|
[[package]]
|
|
148
148
|
name = "backtrace"
|
|
149
|
-
version = "0.3.
|
|
149
|
+
version = "0.3.76"
|
|
150
150
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
|
151
|
-
checksum = "
|
|
151
|
+
checksum = "bb531853791a215d7c62a30daf0dde835f381ab5de4589cfe7c649d2cbe92bd6"
|
|
152
152
|
dependencies = [
|
|
153
153
|
"addr2line",
|
|
154
154
|
"cfg-if",
|
|
@@ -156,7 +156,7 @@ dependencies = [
|
|
|
156
156
|
"miniz_oxide",
|
|
157
157
|
"object",
|
|
158
158
|
"rustc-demangle",
|
|
159
|
-
"windows-
|
|
159
|
+
"windows-link 0.2.0",
|
|
160
160
|
]
|
|
161
161
|
|
|
162
162
|
[[package]]
|
|
@@ -212,7 +212,7 @@ dependencies = [
|
|
|
212
212
|
"statrs",
|
|
213
213
|
"strum",
|
|
214
214
|
"strum_macros",
|
|
215
|
-
"thiserror 2.0.
|
|
215
|
+
"thiserror 2.0.17",
|
|
216
216
|
"triple_accel",
|
|
217
217
|
"vec_map",
|
|
218
218
|
]
|
|
@@ -333,9 +333,9 @@ checksum = "37b2a672a2cb129a2e41c10b1224bb368f9f37a2b16b612598138befd7b37eb5"
|
|
|
333
333
|
|
|
334
334
|
[[package]]
|
|
335
335
|
name = "cc"
|
|
336
|
-
version = "1.2.
|
|
336
|
+
version = "1.2.39"
|
|
337
337
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
|
338
|
-
checksum = "
|
|
338
|
+
checksum = "e1354349954c6fc9cb0deab020f27f783cf0b604e8bb754dc4658ecf0d29c35f"
|
|
339
339
|
dependencies = [
|
|
340
340
|
"find-msvc-tools",
|
|
341
341
|
"shlex",
|
|
@@ -693,7 +693,7 @@ checksum = "3e02df23d5b1c6f9e69fa603b890378123b93073df998a21e6e33b9db0a32613"
|
|
|
693
693
|
[[package]]
|
|
694
694
|
name = "efficient_pca"
|
|
695
695
|
version = "0.1.8"
|
|
696
|
-
source = "git+https://github.com/SauersML/efficient_pca#
|
|
696
|
+
source = "git+https://github.com/SauersML/efficient_pca#34bdb4e025aa8d4e83f4e41ae4556b9965473bbc"
|
|
697
697
|
dependencies = [
|
|
698
698
|
"bincode",
|
|
699
699
|
"bytemuck",
|
|
@@ -823,7 +823,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
|
|
|
823
823
|
checksum = "39cab71617ae0d63f51a36d69f866391735b51691dbda63cf6f96d042b63efeb"
|
|
824
824
|
dependencies = [
|
|
825
825
|
"libc",
|
|
826
|
-
"windows-sys 0.61.
|
|
826
|
+
"windows-sys 0.61.1",
|
|
827
827
|
]
|
|
828
828
|
|
|
829
829
|
[[package]]
|
|
@@ -895,7 +895,7 @@ checksum = "835a3dc7d1ec9e75e2b5fb4ba75396837112d2060b03f7d43bc1897c7f7211da"
|
|
|
895
895
|
|
|
896
896
|
[[package]]
|
|
897
897
|
name = "ferromic"
|
|
898
|
-
version = "0.1.
|
|
898
|
+
version = "0.1.2"
|
|
899
899
|
dependencies = [
|
|
900
900
|
"anyhow",
|
|
901
901
|
"assert_cmd",
|
|
@@ -1163,9 +1163,9 @@ dependencies = [
|
|
|
1163
1163
|
|
|
1164
1164
|
[[package]]
|
|
1165
1165
|
name = "gimli"
|
|
1166
|
-
version = "0.
|
|
1166
|
+
version = "0.32.3"
|
|
1167
1167
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
|
1168
|
-
checksum = "
|
|
1168
|
+
checksum = "e629b9b98ef3dd8afe6ca2bd0f89306cec16d43d907889945bc5d6687f2f13c7"
|
|
1169
1169
|
|
|
1170
1170
|
[[package]]
|
|
1171
1171
|
name = "glob"
|
|
@@ -1238,7 +1238,7 @@ dependencies = [
|
|
|
1238
1238
|
"js-sys",
|
|
1239
1239
|
"log",
|
|
1240
1240
|
"wasm-bindgen",
|
|
1241
|
-
"windows-core 0.62.
|
|
1241
|
+
"windows-core 0.62.1",
|
|
1242
1242
|
]
|
|
1243
1243
|
|
|
1244
1244
|
[[package]]
|
|
@@ -1353,9 +1353,9 @@ checksum = "4a5f13b858c8d314ee3e8f639011f7ccefe71f97f96e50151fb991f267928e2c"
|
|
|
1353
1353
|
|
|
1354
1354
|
[[package]]
|
|
1355
1355
|
name = "js-sys"
|
|
1356
|
-
version = "0.3.
|
|
1356
|
+
version = "0.3.81"
|
|
1357
1357
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
|
1358
|
-
checksum = "
|
|
1358
|
+
checksum = "ec48937a97411dcb524a265206ccd4c90bb711fca92b2792c407f268825b9305"
|
|
1359
1359
|
dependencies = [
|
|
1360
1360
|
"once_cell",
|
|
1361
1361
|
"wasm-bindgen",
|
|
@@ -1445,9 +1445,9 @@ dependencies = [
|
|
|
1445
1445
|
|
|
1446
1446
|
[[package]]
|
|
1447
1447
|
name = "memchr"
|
|
1448
|
-
version = "2.7.
|
|
1448
|
+
version = "2.7.6"
|
|
1449
1449
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
|
1450
|
-
checksum = "
|
|
1450
|
+
checksum = "f52b00d39961fc5b2736ea853c9cc86238e165017a493d1d5c8eac6bdc4cc273"
|
|
1451
1451
|
|
|
1452
1452
|
[[package]]
|
|
1453
1453
|
name = "memmap2"
|
|
@@ -1752,9 +1752,9 @@ dependencies = [
|
|
|
1752
1752
|
|
|
1753
1753
|
[[package]]
|
|
1754
1754
|
name = "object"
|
|
1755
|
-
version = "0.
|
|
1755
|
+
version = "0.37.3"
|
|
1756
1756
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
|
1757
|
-
checksum = "
|
|
1757
|
+
checksum = "ff76201f031d8863c38aa7f905eca4f53abbfa15f609db4277d44cd8938f33fe"
|
|
1758
1758
|
dependencies = [
|
|
1759
1759
|
"memchr",
|
|
1760
1760
|
]
|
|
@@ -1822,7 +1822,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
|
|
|
1822
1822
|
checksum = "21e0a3a33733faeaf8651dfee72dd0f388f0c8e5ad496a3478fa5a922f49cfa8"
|
|
1823
1823
|
dependencies = [
|
|
1824
1824
|
"memchr",
|
|
1825
|
-
"thiserror 2.0.
|
|
1825
|
+
"thiserror 2.0.17",
|
|
1826
1826
|
"ucd-trie",
|
|
1827
1827
|
]
|
|
1828
1828
|
|
|
@@ -2110,9 +2110,9 @@ dependencies = [
|
|
|
2110
2110
|
|
|
2111
2111
|
[[package]]
|
|
2112
2112
|
name = "quote"
|
|
2113
|
-
version = "1.0.
|
|
2113
|
+
version = "1.0.41"
|
|
2114
2114
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
|
2115
|
-
checksum = "
|
|
2115
|
+
checksum = "ce25767e7b499d1b604768e7cde645d14cc8584231ea6b295e9c9eb22c02e1d1"
|
|
2116
2116
|
dependencies = [
|
|
2117
2117
|
"proc-macro2",
|
|
2118
2118
|
]
|
|
@@ -2226,9 +2226,9 @@ dependencies = [
|
|
|
2226
2226
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