ferromic 0.1.0__tar.gz → 0.1.1__tar.gz

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  1. {ferromic-0.1.0 → ferromic-0.1.1}/PKG-INFO +1 -1
  2. {ferromic-0.1.0 → ferromic-0.1.1}/pyproject.toml +1 -1
  3. {ferromic-0.1.0 → ferromic-0.1.1}/.cargo/config.toml +0 -0
  4. {ferromic-0.1.0 → ferromic-0.1.1}/.github/workflows/CI.yml +0 -0
  5. {ferromic-0.1.0 → ferromic-0.1.1}/.github/workflows/benchmarks.yml +0 -0
  6. {ferromic-0.1.0 → ferromic-0.1.1}/.github/workflows/fixer.yml +0 -0
  7. {ferromic-0.1.0 → ferromic-0.1.1}/.github/workflows/rust.yml +0 -0
  8. {ferromic-0.1.0 → ferromic-0.1.1}/.gitignore +0 -0
  9. {ferromic-0.1.0 → ferromic-0.1.1}/Cargo.lock +0 -0
  10. {ferromic-0.1.0 → ferromic-0.1.1}/Cargo.toml +0 -0
  11. {ferromic-0.1.0 → ferromic-0.1.1}/LICENSE.md +0 -0
  12. {ferromic-0.1.0 → ferromic-0.1.1}/README.md +0 -0
  13. {ferromic-0.1.0 → ferromic-0.1.1}/benches/pca.rs +0 -0
  14. {ferromic-0.1.0 → ferromic-0.1.1}/cds/axt_to_phy.py +0 -0
  15. {ferromic-0.1.0 → ferromic-0.1.1}/cds/combine_phy.py +0 -0
  16. {ferromic-0.1.0 → ferromic-0.1.1}/cds/omega_test.py +0 -0
  17. {ferromic-0.1.0 → ferromic-0.1.1}/data/README.md +0 -0
  18. {ferromic-0.1.0 → ferromic-0.1.1}/data/balanced_recurrence_results.tsv +0 -0
  19. {ferromic-0.1.0 → ferromic-0.1.1}/data/callset.tsv +0 -0
  20. {ferromic-0.1.0 → ferromic-0.1.1}/data/md5sum.txt +0 -0
  21. {ferromic-0.1.0 → ferromic-0.1.1}/data/passed_snvs.txt +0 -0
  22. {ferromic-0.1.0 → ferromic-0.1.1}/data/significant_heritability_diseases.tsv +0 -0
  23. {ferromic-0.1.0 → ferromic-0.1.1}/data/vcf_list.txt +0 -0
  24. {ferromic-0.1.0 → ferromic-0.1.1}/deny.toml +0 -0
  25. {ferromic-0.1.0 → ferromic-0.1.1}/install.sh +0 -0
  26. {ferromic-0.1.0 → ferromic-0.1.1}/phewas/README.md +0 -0
  27. {ferromic-0.1.0 → ferromic-0.1.1}/phewas/extra/family.py +0 -0
  28. {ferromic-0.1.0 → ferromic-0.1.1}/phewas/extra/score.py +0 -0
  29. {ferromic-0.1.0 → ferromic-0.1.1}/phewas/iox.py +0 -0
  30. {ferromic-0.1.0 → ferromic-0.1.1}/phewas/models.py +0 -0
  31. {ferromic-0.1.0 → ferromic-0.1.1}/phewas/pheno.py +0 -0
  32. {ferromic-0.1.0 → ferromic-0.1.1}/phewas/pipes.py +0 -0
  33. {ferromic-0.1.0 → ferromic-0.1.1}/phewas/run.py +0 -0
  34. {ferromic-0.1.0 → ferromic-0.1.1}/phewas/test_setup.sh +0 -0
  35. {ferromic-0.1.0 → ferromic-0.1.1}/phewas/testing.py +0 -0
  36. {ferromic-0.1.0 → ferromic-0.1.1}/phewas/tests.py +0 -0
  37. {ferromic-0.1.0 → ferromic-0.1.1}/rust-toolchain.toml +0 -0
  38. {ferromic-0.1.0 → ferromic-0.1.1}/scripts/check_fixed_sites.py +0 -0
  39. {ferromic-0.1.0 → ferromic-0.1.1}/scripts/deduplicate.py +0 -0
  40. {ferromic-0.1.0 → ferromic-0.1.1}/scripts/dnds.py +0 -0
  41. {ferromic-0.1.0 → ferromic-0.1.1}/scripts/phy_to_fasta.py +0 -0
  42. {ferromic-0.1.0 → ferromic-0.1.1}/src/README.md +0 -0
  43. {ferromic-0.1.0 → ferromic-0.1.1}/src/lib.rs +0 -0
  44. {ferromic-0.1.0 → ferromic-0.1.1}/src/main.rs +0 -0
  45. {ferromic-0.1.0 → ferromic-0.1.1}/src/merge.rs +0 -0
  46. {ferromic-0.1.0 → ferromic-0.1.1}/src/parse.rs +0 -0
  47. {ferromic-0.1.0 → ferromic-0.1.1}/src/pca.rs +0 -0
  48. {ferromic-0.1.0 → ferromic-0.1.1}/src/process.rs +0 -0
  49. {ferromic-0.1.0 → ferromic-0.1.1}/src/progress.rs +0 -0
  50. {ferromic-0.1.0 → ferromic-0.1.1}/src/pybenches/__init__.py +0 -0
  51. {ferromic-0.1.0 → ferromic-0.1.1}/src/pybenches/conftest.py +0 -0
  52. {ferromic-0.1.0 → ferromic-0.1.1}/src/pybenches/test_population_pca_benchmarks.py +0 -0
  53. {ferromic-0.1.0 → ferromic-0.1.1}/src/pybenches/test_population_statistics_benchmarks.py +0 -0
  54. {ferromic-0.1.0 → ferromic-0.1.1}/src/pytests/__init__.py +0 -0
  55. {ferromic-0.1.0 → ferromic-0.1.1}/src/pytests/test_diversity_integration.py +0 -0
  56. {ferromic-0.1.0 → ferromic-0.1.1}/src/pytests/test_ferromic.py +0 -0
  57. {ferromic-0.1.0 → ferromic-0.1.1}/src/pytests/test_hudson_fst_integration.py +0 -0
  58. {ferromic-0.1.0 → ferromic-0.1.1}/src/run_vcf.rs +0 -0
  59. {ferromic-0.1.0 → ferromic-0.1.1}/src/stats.rs +0 -0
  60. {ferromic-0.1.0 → ferromic-0.1.1}/src/tests/filter_tests.rs +0 -0
  61. {ferromic-0.1.0 → ferromic-0.1.1}/src/tests/hudson_fst_tests.rs +0 -0
  62. {ferromic-0.1.0 → ferromic-0.1.1}/src/tests/interval_tests.rs +0 -0
  63. {ferromic-0.1.0 → ferromic-0.1.1}/src/tests/stats_tests.rs +0 -0
  64. {ferromic-0.1.0 → ferromic-0.1.1}/src/transcripts.rs +0 -0
  65. {ferromic-0.1.0 → ferromic-0.1.1}/stats/CDS_identical_model.py +0 -0
  66. {ferromic-0.1.0 → ferromic-0.1.1}/stats/CDS_plots.py +0 -0
  67. {ferromic-0.1.0 → ferromic-0.1.1}/stats/OR_matrix.py +0 -0
  68. {ferromic-0.1.0 → ferromic-0.1.1}/stats/_inv_common.py +0 -0
  69. {ferromic-0.1.0 → ferromic-0.1.1}/stats/af_pi.py +0 -0
  70. {ferromic-0.1.0 → ferromic-0.1.1}/stats/analyze_activations.py +0 -0
  71. {ferromic-0.1.0 → ferromic-0.1.1}/stats/best_tag.py +0 -0
  72. {ferromic-0.1.0 → ferromic-0.1.1}/stats/category_per_site.py +0 -0
  73. {ferromic-0.1.0 → ferromic-0.1.1}/stats/category_per_site_normed.py +0 -0
  74. {ferromic-0.1.0 → ferromic-0.1.1}/stats/cds_differences.py +0 -0
  75. {ferromic-0.1.0 → ferromic-0.1.1}/stats/conserve_chords.py +0 -0
  76. {ferromic-0.1.0 → ferromic-0.1.1}/stats/conserve_inv_dir.py +0 -0
  77. {ferromic-0.1.0 → ferromic-0.1.1}/stats/cross_violins.py +0 -0
  78. {ferromic-0.1.0 → ferromic-0.1.1}/stats/dist_fst_by_type.py +0 -0
  79. {ferromic-0.1.0 → ferromic-0.1.1}/stats/distance_diversity.py +0 -0
  80. {ferromic-0.1.0 → ferromic-0.1.1}/stats/diversity_dir_inv.py +0 -0
  81. {ferromic-0.1.0 → ferromic-0.1.1}/stats/diversity_scatterplot.py +0 -0
  82. {ferromic-0.1.0 → ferromic-0.1.1}/stats/dnds_kde.py +0 -0
  83. {ferromic-0.1.0 → ferromic-0.1.1}/stats/each_per_site.py +0 -0
  84. {ferromic-0.1.0 → ferromic-0.1.1}/stats/estimators_fst.py +0 -0
  85. {ferromic-0.1.0 → ferromic-0.1.1}/stats/events_rate_diversity.py +0 -0
  86. {ferromic-0.1.0 → ferromic-0.1.1}/stats/fixed.py +0 -0
  87. {ferromic-0.1.0 → ferromic-0.1.1}/stats/forest.py +0 -0
  88. {ferromic-0.1.0 → ferromic-0.1.1}/stats/fst_violins.py +0 -0
  89. {ferromic-0.1.0 → ferromic-0.1.1}/stats/get_codes.py +0 -0
  90. {ferromic-0.1.0 → ferromic-0.1.1}/stats/imputation_plot.py +0 -0
  91. {ferromic-0.1.0 → ferromic-0.1.1}/stats/infer.py +0 -0
  92. {ferromic-0.1.0 → ferromic-0.1.1}/stats/inv_dir_recur.py +0 -0
  93. {ferromic-0.1.0 → ferromic-0.1.1}/stats/inv_dir_recur_model.py +0 -0
  94. {ferromic-0.1.0 → ferromic-0.1.1}/stats/inv_dir_recur_violins.py +0 -0
  95. {ferromic-0.1.0 → ferromic-0.1.1}/stats/inversion_phewas_report.py +0 -0
  96. {ferromic-0.1.0 → ferromic-0.1.1}/stats/inversion_table.py +0 -0
  97. {ferromic-0.1.0 → ferromic-0.1.1}/stats/length_distribution.py +0 -0
  98. {ferromic-0.1.0 → ferromic-0.1.1}/stats/linked.py +0 -0
  99. {ferromic-0.1.0 → ferromic-0.1.1}/stats/manhattan_phe.py +0 -0
  100. {ferromic-0.1.0 → ferromic-0.1.1}/stats/manhattan_plot.py +0 -0
  101. {ferromic-0.1.0 → ferromic-0.1.1}/stats/matrix_plots.py +0 -0
  102. {ferromic-0.1.0 → ferromic-0.1.1}/stats/middle_vs_flank_fst.py +0 -0
  103. {ferromic-0.1.0 → ferromic-0.1.1}/stats/middle_vs_flank_pi.py +0 -0
  104. {ferromic-0.1.0 → ferromic-0.1.1}/stats/middle_vs_flank_pi_recurrence.py +0 -0
  105. {ferromic-0.1.0 → ferromic-0.1.1}/stats/num_events_diversity.py +0 -0
  106. {ferromic-0.1.0 → ferromic-0.1.1}/stats/orientation_pcs.py +0 -0
  107. {ferromic-0.1.0 → ferromic-0.1.1}/stats/overall_fst_by_type.py +0 -0
  108. {ferromic-0.1.0 → ferromic-0.1.1}/stats/overall_groups_dnds.py +0 -0
  109. {ferromic-0.1.0 → ferromic-0.1.1}/stats/pack_models.py +0 -0
  110. {ferromic-0.1.0 → ferromic-0.1.1}/stats/pairwise_matrix_test.py +0 -0
  111. {ferromic-0.1.0 → ferromic-0.1.1}/stats/per_gene_cds_differences_jackknife.py +0 -0
  112. {ferromic-0.1.0 → ferromic-0.1.1}/stats/permute.py +0 -0
  113. {ferromic-0.1.0 → ferromic-0.1.1}/stats/phelist.py +0 -0
  114. {ferromic-0.1.0 → ferromic-0.1.1}/stats/pls_patch.py +0 -0
  115. {ferromic-0.1.0 → ferromic-0.1.1}/stats/prepare_data_for_infer.py +0 -0
  116. {ferromic-0.1.0 → ferromic-0.1.1}/stats/ranged_volcano.py +0 -0
  117. {ferromic-0.1.0 → ferromic-0.1.1}/stats/recur_conservation.py +0 -0
  118. {ferromic-0.1.0 → ferromic-0.1.1}/stats/recur_diversity.py +0 -0
  119. {ferromic-0.1.0 → ferromic-0.1.1}/stats/region_descriptive.py +0 -0
  120. {ferromic-0.1.0 → ferromic-0.1.1}/stats/regions_plot.py +0 -0
  121. {ferromic-0.1.0 → ferromic-0.1.1}/stats/replicate_plots.py +0 -0
  122. {ferromic-0.1.0 → ferromic-0.1.1}/stats/replicate_stats.py +0 -0
  123. {ferromic-0.1.0 → ferromic-0.1.1}/stats/shuffle_coords.py +0 -0
  124. {ferromic-0.1.0 → ferromic-0.1.1}/stats/snv_list_acaf_download.py +0 -0
  125. {ferromic-0.1.0 → ferromic-0.1.1}/stats/stats_table.py +0 -0
  126. {ferromic-0.1.0 → ferromic-0.1.1}/stats/tagged.py +0 -0
  127. {ferromic-0.1.0 → ferromic-0.1.1}/stats/top_n_pi.py +0 -0
  128. {ferromic-0.1.0 → ferromic-0.1.1}/stats/vcf_snv_list.py +0 -0
  129. {ferromic-0.1.0 → ferromic-0.1.1}/stats/visualize_pca.py +0 -0
  130. {ferromic-0.1.0 → ferromic-0.1.1}/stats/volcano.py +0 -0
  131. {ferromic-0.1.0 → ferromic-0.1.1}/stats/wald_ci.py +0 -0
{ferromic-0.1.0 → ferromic-0.1.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: ferromic
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- Version: 0.1.0
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+ Version: 0.1.1
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  Classifier: Development Status :: 4 - Beta
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  Classifier: Intended Audience :: Science/Research
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  Classifier: License :: Other/Proprietary License
{ferromic-0.1.0 → ferromic-0.1.1}/pyproject.toml RENAMED
@@ -3,7 +3,7 @@ requires = ["maturin[patchelf]>=1.0,<2.0"]
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  build-backend = "maturin"
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  [project]
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- version = "0.1.0"
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+ version = "0.1.1"
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  name = "ferromic"
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  requires-python = ">=3.9"
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  description = "Rust-accelerated population genetics toolkit with ergonomic Python bindings"
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