fastremap 1.11.1__cp38-cp38-macosx_11_0_arm64.whl → 1.15.0__cp38-cp38-macosx_11_0_arm64.whl

{fastremap-1.11.1.dist-info → fastremap-1.15.0.dist-info}/METADATA

@@ -1,28 +1,28 @@
 Metadata-Version: 2.1
 Name: fastremap
-Version: 1.11.1
-Summary: Remap, mask, renumber, and in-place transpose numpy arrays.
+Version: 1.15.0
+Summary: Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
 Home-page: https://github.com/seung-lab/fastremap/
 Author: William Silversmith
 Author-email: ws9@princeton.edu
-License: LGPLv3
-Platform: UNKNOWN
 Classifier: Intended Audience :: Developers
-Classifier: Development Status :: 4 - Beta
+Classifier: Development Status :: 5 - Production/Stable
 Classifier: License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)
 Classifier: Programming Language :: Python
-Classifier: Programming Language :: Python :: 2
-Classifier: Programming Language :: Python :: 2.7
 Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.5
-Classifier: Programming Language :: Python :: 3.6
 Classifier: Programming Language :: Python :: 3.7
 Classifier: Programming Language :: Python :: 3.8
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
 Classifier: Topic :: Utilities
+Requires-Python: >=3.8,<4.0
 Description-Content-Type: text/markdown
+License-File: LICENSE
+License-File: AUTHORS
 Requires-Dist: numpy
 
-[![Build Status](https://travis-ci.org/seung-lab/fastremap.svg?branch=master)](https://travis-ci.org/seung-lab/fastremap) [![PyPI version](https://badge.fury.io/py/fastremap.svg)](https://badge.fury.io/py/fastremap)  
+[![PyPI version](https://badge.fury.io/py/fastremap.svg)](https://badge.fury.io/py/fastremap)  
 
 # fastremap
 
@@ -33,6 +33,7 @@ import fastremap
 
 uniq, cts = fastremap.unique(labels, return_counts=True) # may be much faster than np.unique
 labels, remapping = fastremap.renumber(labels, in_place=True) # relabel values from 1 and refit data type
+ptc = fastremap.point_cloud(labels) # dict of coordinates by label
 
 labels = fastremap.refit(labels) # resize the data type of the array to fit extrema
 labels = fastremap.refit(labels, value=-35) # resize the data type to fit the value provided
@@ -53,7 +54,15 @@ fastremap.asfortranarray(labels) # try to perform a physical in-place transposit
 minval, maxval = fastremap.minmax(labels) # faster version of (np.min(labels), np.max(labels))
 
 # computes number of matching adjacent pixel pairs in an image
-num_pairs = fastremap.pixel_pairs(labels) 
+num_pairs = fastremap.pixel_pairs(labels)  
+n_foreground = fastremap.foreground(labels) # number of nonzero voxels
+
+# computes the cutout.tobytes(order) of each chunk and returns
+# the binaries indexed by fortran order in the order specified (C or F)
+# If the input image is F contiguous and F is requested, or C and C order,
+# and the image is larger than a single chunk, this will be significantly
+# faster than iterating and using tobytes.
+binaries = fastremap.tobytes(labels, (64,64,64), order="F")
 ```
 
 ## All Available Functions 
@@ -71,7 +80,9 @@ num_pairs = fastremap.pixel_pairs(labels)
 - **ascontiguousarray:** Perform an in-place matrix transposition for rectangular arrays if memory is contiguous, standard numpy algorithm otherwise.
 - **minmax:** Compute the min and max of an array in one pass.
 - **pixel_pairs:** Computes the number of adjacent matching memory locations in an image. A quick heuristic for understanding if the image statistics are roughly similar to a connectomics segmentation.
-
+- **foreground:** Count the number of non-zero voxels rapidly.
+- **point_cloud:** Get the X,Y,Z locations of each foreground voxel grouped by label.
+- **tobytes**: Compute the tobytes of an image divided into a grid and return the resultant binaries indexed by their gridpoint in fortran order with the binary in the order requested (C or F).
 
 ## `pip` Installation
 
@@ -206,5 +217,3 @@ int main() {
 --  
 Made with <3
 
-
-

fastremap-1.15.0.dist-info/RECORD

@@ -0,0 +1,8 @@
+fastremap.cpython-38-darwin.so,sha256=_Ud5euAuEW9vsQ1-YIM2MmiaiFMR2KlqT5By4n_tMRk,2232704
+fastremap-1.15.0.dist-info/RECORD,,
+fastremap-1.15.0.dist-info/LICENSE,sha256=46mU2C5kSwOnkqkw9XQAJlhBL2JAf1_uCD8lVcXyMRg,7652
+fastremap-1.15.0.dist-info/AUTHORS,sha256=Aa4H7O3dtmfq0lF_eATudy11i8K6QAI8LykzASr9bL0,52
+fastremap-1.15.0.dist-info/WHEEL,sha256=gsPOSQtk_AwfrpwC2Qymh-3XZWv5-gpsKk0Ttd7iiDQ,107
+fastremap-1.15.0.dist-info/pbr.json,sha256=IF2avLM9-O2y2CxH3mesM-TRiHIjg8t5pFQi735SJm4,47
+fastremap-1.15.0.dist-info/top_level.txt,sha256=D-q4-YJbbk7QpuU8fxH9rFQEjV_W6wpdruzTTDV4N5s,10
+fastremap-1.15.0.dist-info/METADATA,sha256=oBRRccRNpLH1avttODjtgdp01Em5JI42hOSMexRb360,9561

{fastremap-1.11.1.dist-info → fastremap-1.15.0.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.36.2)
+Generator: setuptools (71.0.3)
 Root-Is-Purelib: false
 Tag: cp38-cp38-macosx_11_0_arm64
 

fastremap-1.15.0.dist-info/pbr.json

@@ -0,0 +1 @@
+{"git_version": "80ce9fc", "is_release": false}

fastremap-1.11.1.dist-info/RECORD

@@ -1,8 +0,0 @@
-fastremap.cpython-38-darwin.so,sha256=fVYT9cXFHPBDZXcAgLXejK1OnU7oPYkIAMjdZMU5fR8,1624731
-fastremap-1.11.1.dist-info/AUTHORS,sha256=Aa4H7O3dtmfq0lF_eATudy11i8K6QAI8LykzASr9bL0,52
-fastremap-1.11.1.dist-info/LICENSE,sha256=46mU2C5kSwOnkqkw9XQAJlhBL2JAf1_uCD8lVcXyMRg,7652
-fastremap-1.11.1.dist-info/METADATA,sha256=CJuAQ23OfeUJ79ZjWgxe0CY8fPI6X_vxA54QH5ErJ20,8774
-fastremap-1.11.1.dist-info/WHEEL,sha256=RLkJ4w9rFNV9KnHOKFT4aYTEy5PQyrqfvqF41wMk2Kk,108
-fastremap-1.11.1.dist-info/pbr.json,sha256=yAJx52O8siOTDdzgYajsoJbiOA-EzroZV3sXNNN6X70,46
-fastremap-1.11.1.dist-info/top_level.txt,sha256=D-q4-YJbbk7QpuU8fxH9rFQEjV_W6wpdruzTTDV4N5s,10
-fastremap-1.11.1.dist-info/RECORD,,

fastremap-1.11.1.dist-info/pbr.json

@@ -1 +0,0 @@
-{"git_version": "17830c5", "is_release": true}