fastdfs 0.2.0__tar.gz

fastdfs-0.2.0/LICENSE

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fastdfs-0.2.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: fastdfs
+Version: 0.2.0
+Summary: Fast Deep Feature Synthesis for tabular data
+Author: HKU Shanghai X-Lab
+Maintainer: HKU Shanghai X-Lab
+License: Apache-2.0
+Project-URL: Homepage, https://github.com/HKUSHXLab/fastdfs
+Project-URL: Repository, https://github.com/HKUSHXLab/fastdfs
+Project-URL: Documentation, https://github.com/HKUSHXLab/fastdfs/blob/main/fastdfs/README.md
+Project-URL: Bug Tracker, https://github.com/HKUSHXLab/fastdfs/issues
+Keywords: feature engineering,deep feature synthesis,tabular data,automated ML
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Developers
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Classifier: Topic :: Software Development :: Libraries :: Python Modules
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: pandas<3.0,>=2.3.3
+Requires-Dist: numpy
+Requires-Dist: scipy
+Requires-Dist: scikit-learn
+Requires-Dist: pyarrow<21.0.0
+Requires-Dist: featuretools
+Requires-Dist: sqlalchemy
+Requires-Dist: duckdb
+Requires-Dist: sqlglot<28.0.0,>=27.8.0
+Requires-Dist: sql_formatter
+Requires-Dist: pydantic
+Requires-Dist: pyyaml
+Requires-Dist: tqdm
+Requires-Dist: psutil
+Requires-Dist: loguru
+Requires-Dist: boto3
+Requires-Dist: requests
+Provides-Extra: dev
+Requires-Dist: pytest>=7.0.0; extra == "dev"
+Requires-Dist: pytest-cov>=4.0.0; extra == "dev"
+Requires-Dist: black>=22.0.0; extra == "dev"
+Requires-Dist: isort>=5.10.0; extra == "dev"
+Requires-Dist: flake8>=5.0.0; extra == "dev"
+Requires-Dist: mypy>=0.991; extra == "dev"
+Provides-Extra: postgres
+Requires-Dist: psycopg2-binary; extra == "postgres"
+Provides-Extra: mysql
+Requires-Dist: pymysql; extra == "mysql"
+Provides-Extra: all
+Requires-Dist: psycopg2-binary; extra == "all"
+Requires-Dist: pymysql; extra == "all"
+Dynamic: license-file
+
+# FastDFS - Deep Feature Synthesis for Tabular Data
+
+FastDFS is a Python library for automated feature engineering using Deep Feature Synthesis (DFS). It augments target dataframes with rich features derived from relational database structures, making it easy to create powerful features for machine learning without manual feature engineering.
+
+## Core Concept
+
+FastDFS treats feature engineering as a **table augmentation process**: given any target dataframe and a relational database (RDB) containing related tables, it automatically generates new features by aggregating information across relationships.
+
+```python
+# Your target dataframe (what you want to predict on)
+target_df = pd.DataFrame({
+    "user_id": [1, 2, 3],
+    "item_id": [100, 200, 300], 
+    "interaction_time": ["2024-01-01", "2024-01-02", "2024-01-03"]
+})
+
+# Your relational database (context for feature generation)
+rdb = fastdfs.load_rdb("ecommerce_data/")  # Contains user, item, interaction tables
+
+# Generate features automatically
+enriched_df = fastdfs.compute_dfs_features(
+    rdb=rdb,
+    target_dataframe=target_df,
+    key_mappings={"user_id": "user.user_id", "item_id": "item.item_id"},
+    cutoff_time_column="interaction_time"
+)
+# Result: Original columns + 50+ new features like user_avg_rating, item_count_purchases, etc.
+```
+
+## Installation
+
+```bash
+pip install fastdfs
+```
+
+Or for development:
+```bash
+git clone https://github.com/dglai/fastdfs.git
+cd fastdfs
+pip install -e .
+```
+
+## Quick Start
+
+### 1. Prepare Your Data
+
+FastDFS provides multiple ways to prepare your relational data.
+
+#### Option A: Create from DataFrames (Recommended)
+
+You can create an RDB directly from pandas DataFrames. FastDFS will automatically infer the schema.
+
+```python
+import fastdfs
+import pandas as pd
+
+# 1. Define your tables
+users_df = pd.DataFrame(...)
+items_df = pd.DataFrame(...)
+interactions_df = pd.DataFrame(...)
+
+# 2. Create RDB with relationships
+rdb = fastdfs.create_rdb(
+    name="ecommerce",
+    tables={
+        "user": users_df,
+        "item": items_df,
+        "interaction": interactions_df
+    },
+    primary_keys={
+        "user": "user_id",
+        "item": "item_id"
+    },
+    foreign_keys=[
+        ("interaction", "user_id", "user", "user_id"),
+        ("interaction", "item_id", "item", "item_id")
+    ],
+    time_columns={
+        "interaction": "timestamp"
+    }
+)
+
+# 3. Save for later use
+rdb.save("ecommerce_rdb/")
+
+# 4. Load it back
+rdb = fastdfs.load_rdb("ecommerce_rdb/")
+```
+
+#### Option B: Adapt Existing Datasets
+
+FastDFS includes adapters for popular relational dataset benchmarks.
+
+**RelBench**
+```python
+from fastdfs.adapter.relbench import RelBenchAdapter
+
+# Load and convert RelBench dataset
+adapter = RelBenchAdapter("rel-stack")
+rdb = adapter.load()
+rdb.save("rel-stack-rdb/")
+```
+
+**DBInfer**
+```python
+from fastdfs.adapter.dbinfer import DBInferAdapter
+
+# Load and convert DBInfer dataset
+adapter = DBInferAdapter("diginetica")
+rdb = adapter.load()
+rdb.save("diginetica-rdb/")
+```
+
+#### Option C: Load from Relational Database
+
+FastDFS supports loading data directly from SQL databases (SQLite, MySQL, PostgreSQL, DuckDB).
+
+```python
+from fastdfs.adapter.sqlite import SQLiteAdapter
+# from fastdfs.adapter.mysql import MySQLAdapter
+# from fastdfs.adapter.postgres import PostgreSQLAdapter
+
+# Connect to database
+adapter = SQLiteAdapter(
+      "ecommerce.db",
+      time_columns={"orders": "created_at"},  # (Optional) specify which column is the time column for which table
+      type_hints={"users": {"age": "float"}}  # (Optional) specify the desired column data type
+)
+
+# Or for MySQL/PostgreSQL:
+# adapter = MySQLAdapter("mysql+pymysql://user:pass@host/db")
+
+rdb = adapter.load()
+```
+
+### 2. Generate Features
+
+```python
+import fastdfs
+import pandas as pd
+
+# Prepare your rdb from the methods above
+rdb = ...
+
+# Create or load your target dataframe
+target_df = pd.DataFrame({
+    "user_id": [1, 2, 3],
+    "item_id": [10, 20, 30],
+    "prediction_time": ["2024-01-01", "2024-01-02", "2024-01-03"]
+})
+
+# Generate features
+features = fastdfs.compute_dfs_features(
+    rdb=rdb,
+    target_dataframe=target_df, 
+    key_mappings={
+        "user_id": "user.user_id",
+        "item_id": "item.item_id"  
+    },
+    cutoff_time_column="prediction_time",
+    config_overrides={"max_depth": 2}
+)
+
+print(f"Original columns: {len(target_df.columns)}")
+print(f"With features: {len(features.columns)}")
+```
+
+### 3. Advanced Usage with Transforms
+
+```python
+# Apply preprocessing transforms before feature generation
+from fastdfs.transform import RDBTransformWrapper, RDBTransformPipeline, HandleDummyTable, FeaturizeDatetime
+
+pipeline = fastdfs.DFSPipeline(
+    transform_pipeline=RDBTransformPipeline([
+        HandleDummyTable(),
+        RDBTransformWrapper(FeaturizeDatetime(features=["year", "month", "hour"]))
+    ]),
+    dfs_config=fastdfs.DFSConfig(max_depth=3, engine="dfs2sql")
+)
+
+features = pipeline.run(
+    rdb=rdb,
+    target_dataframe=target_df,
+    key_mappings=key_mappings,
+    cutoff_time_column="prediction_time"
+)
+```
+
+## Key Features
+
+- **Table-Centric Design**: Augment any dataframe, not just predefined datasets
+- **Multiple DFS Engines**: Choose between Featuretools (pandas) or DFS2SQL (high-performance)
+- **Temporal Consistency**: Built-in cutoff time support prevents data leakage
+- **Flexible Key Mapping**: Connect target data to RDB with simple column mappings
+- **Transform Pipeline**: Composable preprocessing transforms for data cleaning
+- **Type Safety**: Full type hints and runtime validation
+- **Minimal Dependencies**: Focused, lightweight package
+
+## Engine Comparison
+
+| Feature | Featuretools | DFS2SQL |
+|---------|-------------|---------|
+| Performance | Good for small data | Excellent for large data |
+| Memory Usage | High (pandas) | Low (SQL-based) |
+| Primitives | Rich set | Core primitives |
+| Backend | Pandas | DuckDB |
+
+## Documentation
+
+- **[User Guide](docs/user_guide.md)**: Complete tutorial with concepts and examples
+- **[API Reference](docs/api_reference.md)**: Detailed API documentation
+- **[Examples](examples/)**: Runnable code examples
+
+## Why FastDFS?
+
+**Before FastDFS** (manual feature engineering):
+```python
+# Manual aggregations for each feature
+user_avg_rating = interactions.groupby('user_id')['rating'].mean()
+user_total_purchases = interactions.groupby('user_id').size()
+item_avg_rating = interactions.groupby('item_id')['rating'].mean()
+# ... dozens more features ...
+```
+
+**With FastDFS** (automated):
+```python
+# Automatic generation of 50+ features
+features = fastdfs.compute_dfs_features(rdb, target_df, key_mappings)
+```
+
+FastDFS automatically discovers relationships in your data and generates meaningful aggregation features, saving weeks of manual feature engineering work.
+
+## Contributing
+
+We welcome contributions! See our [development logs](dev_logs/) for project history and architecture decisions.
+
+## License
+
+Apache-2.0 License