fastMONAI 0.8.2__tar.gz → 0.8.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (32) hide show
  1. {fastmonai-0.8.2/fastMONAI.egg-info → fastmonai-0.8.3}/PKG-INFO +2 -1
  2. fastmonai-0.8.3/fastMONAI/__init__.py +1 -0
  3. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI/_modidx.py +21 -0
  4. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI/vision_loss.py +2 -1
  5. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI/vision_patch.py +403 -420
  6. {fastmonai-0.8.2 → fastmonai-0.8.3/fastMONAI.egg-info}/PKG-INFO +2 -1
  7. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI.egg-info/requires.txt +1 -0
  8. {fastmonai-0.8.2 → fastmonai-0.8.3}/settings.ini +2 -2
  9. fastmonai-0.8.2/fastMONAI/__init__.py +0 -1
  10. {fastmonai-0.8.2 → fastmonai-0.8.3}/CONTRIBUTING.md +0 -0
  11. {fastmonai-0.8.2 → fastmonai-0.8.3}/LICENSE +0 -0
  12. {fastmonai-0.8.2 → fastmonai-0.8.3}/MANIFEST.in +0 -0
  13. {fastmonai-0.8.2 → fastmonai-0.8.3}/README.md +0 -0
  14. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI/dataset_info.py +0 -0
  15. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI/external_data.py +0 -0
  16. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI/research_utils.py +0 -0
  17. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI/utils.py +0 -0
  18. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI/vision_all.py +0 -0
  19. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI/vision_augmentation.py +0 -0
  20. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI/vision_core.py +0 -0
  21. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI/vision_data.py +0 -0
  22. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI/vision_inference.py +0 -0
  23. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI/vision_metrics.py +0 -0
  24. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI/vision_plot.py +0 -0
  25. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI.egg-info/SOURCES.txt +0 -0
  26. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI.egg-info/dependency_links.txt +0 -0
  27. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI.egg-info/entry_points.txt +0 -0
  28. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI.egg-info/not-zip-safe +0 -0
  29. {fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI.egg-info/top_level.txt +0 -0
  30. {fastmonai-0.8.2 → fastmonai-0.8.3}/pyproject.toml +0 -0
  31. {fastmonai-0.8.2 → fastmonai-0.8.3}/setup.cfg +0 -0
  32. {fastmonai-0.8.2 → fastmonai-0.8.3}/setup.py +0 -0
{fastmonai-0.8.2/fastMONAI.egg-info → fastmonai-0.8.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: fastMONAI
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- Version: 0.8.2
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+ Version: 0.8.3
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  Summary: fastMONAI library
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  Home-page: https://github.com/MMIV-ML/fastMONAI
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  Author: Satheshkumar Kaliyugarasan
@@ -31,6 +31,7 @@ Requires-Dist: plum-dispatch
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  Provides-Extra: dev
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  Requires-Dist: ipywidgets; extra == "dev"
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  Requires-Dist: nbdev<3; extra == "dev"
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+ Requires-Dist: execnb<0.2; extra == "dev"
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  Requires-Dist: tabulate; extra == "dev"
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  Requires-Dist: quarto; extra == "dev"
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  Dynamic: author
fastmonai-0.8.3/fastMONAI/__init__.py ADDED
@@ -0,0 +1 @@
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+ __version__ = "0.8.3"
{fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI/_modidx.py RENAMED
@@ -481,6 +481,8 @@ d = { 'settings': { 'branch': 'main',
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  'fastMONAI/vision_patch.py'),
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  'fastMONAI.vision_patch.MedPatchDataLoader.__len__': ( 'vision_patch.html#medpatchdataloader.__len__',
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  'fastMONAI/vision_patch.py'),
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+ 'fastMONAI.vision_patch.MedPatchDataLoader._apply_patch_tfms': ( 'vision_patch.html#medpatchdataloader._apply_patch_tfms',
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+ 'fastMONAI/vision_patch.py'),
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  'fastMONAI.vision_patch.MedPatchDataLoader.close': ( 'vision_patch.html#medpatchdataloader.close',
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  'fastMONAI/vision_patch.py'),
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  'fastMONAI.vision_patch.MedPatchDataLoader.dataset': ( 'vision_patch.html#medpatchdataloader.dataset',
@@ -553,18 +555,37 @@ d = { 'settings': { 'branch': 'main',
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  'fastMONAI/vision_patch.py'),
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  'fastMONAI.vision_patch.PatchInferenceEngine.__init__': ( 'vision_patch.html#patchinferenceengine.__init__',
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  'fastMONAI/vision_patch.py'),
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+ 'fastMONAI.vision_patch.PatchInferenceEngine._postprocess': ( 'vision_patch.html#patchinferenceengine._postprocess',
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+ 'fastMONAI/vision_patch.py'),
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+ 'fastMONAI.vision_patch.PatchInferenceEngine._prepare_subject': ( 'vision_patch.html#patchinferenceengine._prepare_subject',
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+ 'fastMONAI/vision_patch.py'),
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+ 'fastMONAI.vision_patch.PatchInferenceEngine._run_inference': ( 'vision_patch.html#patchinferenceengine._run_inference',
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+ 'fastMONAI/vision_patch.py'),
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  'fastMONAI.vision_patch.PatchInferenceEngine.predict': ( 'vision_patch.html#patchinferenceengine.predict',
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  'fastMONAI/vision_patch.py'),
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  'fastMONAI.vision_patch.PatchInferenceEngine.to': ( 'vision_patch.html#patchinferenceengine.to',
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  'fastMONAI/vision_patch.py'),
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+ 'fastMONAI.vision_patch._PreparedSubject': ( 'vision_patch.html#_preparedsubject',
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+ 'fastMONAI/vision_patch.py'),
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+ 'fastMONAI.vision_patch._build_pre_patch_tfms': ( 'vision_patch.html#_build_pre_patch_tfms',
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+ 'fastMONAI/vision_patch.py'),
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  'fastMONAI.vision_patch._extract_tio_transform': ( 'vision_patch.html#_extract_tio_transform',
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  'fastMONAI/vision_patch.py'),
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  'fastMONAI.vision_patch._get_default_device': ( 'vision_patch.html#_get_default_device',
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  'fastMONAI/vision_patch.py'),
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+ 'fastMONAI.vision_patch._logits_to_probs': ( 'vision_patch.html#_logits_to_probs',
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+ 'fastMONAI/vision_patch.py'),
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  'fastMONAI.vision_patch._normalize_patch_overlap': ( 'vision_patch.html#_normalize_patch_overlap',
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  'fastMONAI/vision_patch.py'),
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+ 'fastMONAI.vision_patch._predict_one': ( 'vision_patch.html#_predict_one',
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+ 'fastMONAI/vision_patch.py'),
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  'fastMONAI.vision_patch._predict_patch_tta': ( 'vision_patch.html#_predict_patch_tta',
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  'fastMONAI/vision_patch.py'),
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+ 'fastMONAI.vision_patch._save_prediction': ( 'vision_patch.html#_save_prediction',
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+ 'fastMONAI/vision_patch.py'),
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+ 'fastMONAI.vision_patch._split_df': ('vision_patch.html#_split_df', 'fastMONAI/vision_patch.py'),
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+ 'fastMONAI.vision_patch._stash_from_df_metadata': ( 'vision_patch.html#_stash_from_df_metadata',
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+ 'fastMONAI/vision_patch.py'),
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  'fastMONAI.vision_patch._warn_config_override': ( 'vision_patch.html#_warn_config_override',
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  'fastMONAI/vision_patch.py'),
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  'fastMONAI.vision_patch.create_patch_sampler': ( 'vision_patch.html#create_patch_sampler',
{fastmonai-0.8.2 → fastmonai-0.8.3}/fastMONAI/vision_loss.py RENAMED
@@ -26,7 +26,8 @@ class CustomLoss:
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  if isinstance(pred, MedBase):
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  pred, targ = torch.Tensor(pred.cpu()), torch.Tensor(targ.cpu().float())
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-
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+
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+ targ = targ.float()
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  return self.loss_func(pred, targ)
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  def activation(self, x):