exprmat 0.2.78__tar.gz → 0.2.80__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (467) hide show
  1. {exprmat-0.2.78 → exprmat-0.2.80}/PKG-INFO +1 -1
  2. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/__init__.py +3 -0
  3. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/reader/rna/proportion.py +2 -2
  4. {exprmat-0.2.78 → exprmat-0.2.80}/pyproject.toml +1 -1
  5. {exprmat-0.2.78 → exprmat-0.2.80}/Cargo.lock +0 -0
  6. {exprmat-0.2.78 → exprmat-0.2.80}/Cargo.toml +0 -0
  7. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/ansi.py +0 -0
  8. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/clustering/__init__.py +0 -0
  9. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/clustering/cnmf.py +0 -0
  10. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/clustering/dbscan.py +0 -0
  11. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/clustering/gating.py +0 -0
  12. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/clustering/kmeans.py +0 -0
  13. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/clustering/leiden.py +0 -0
  14. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/clustering/nmf.py +0 -0
  15. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/clustering/rogue.py +0 -0
  16. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/clustering/sc3.py +0 -0
  17. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/clustering/seriation.py +0 -0
  18. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/clustering/spectral.py +0 -0
  19. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/clustering/utils.py +0 -0
  20. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/cnv/__init__.py +0 -0
  21. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/cnv/cnvscore.py +0 -0
  22. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/cnv/infercnv.py +0 -0
  23. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/configuration.py +0 -0
  24. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/__init__.py +0 -0
  25. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/cistarget.py +0 -0
  26. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/cre.py +0 -0
  27. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/decoupler.py +0 -0
  28. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/finders.py +0 -0
  29. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/geneset.py +0 -0
  30. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/icnet.py +0 -0
  31. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/io.py +0 -0
  32. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/lr.py +0 -0
  33. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/orthologs.py +0 -0
  34. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/presets.py +0 -0
  35. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/repertoire.py +0 -0
  36. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/signature.py +0 -0
  37. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/tf.py +0 -0
  38. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/deconv/__init__.py +0 -0
  39. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/deconv/deconv.py +0 -0
  40. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/deconv/simulation.py +0 -0
  41. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/deconv/tangram/__init__.py +0 -0
  42. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/deconv/tangram/mapping.py +0 -0
  43. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/deconv/tangram/optimizer.py +0 -0
  44. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/deconv/tangram/spatial.py +0 -0
  45. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/deconv/tangram/utils.py +0 -0
  46. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/descriptive/__init__.py +0 -0
  47. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/descriptive/aggregate.py +0 -0
  48. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/descriptive/atac.py +0 -0
  49. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/descriptive/aucell.py +0 -0
  50. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/descriptive/composition.py +0 -0
  51. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/descriptive/covar.py +0 -0
  52. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/descriptive/de.py +0 -0
  53. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/descriptive/geneset.py +0 -0
  54. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/descriptive/gse.py +0 -0
  55. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/descriptive/kde.py +0 -0
  56. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/descriptive/recovery.py +0 -0
  57. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/descriptive/sccoda.py +0 -0
  58. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/descriptive/summary.py +0 -0
  59. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/descriptive/tcr.py +0 -0
  60. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/deseq/dataset.py +0 -0
  61. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/deseq/gridsearch.py +0 -0
  62. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/deseq/inference.py +0 -0
  63. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/deseq/preprocessing.py +0 -0
  64. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/deseq/stats.py +0 -0
  65. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/deseq/utils.py +0 -0
  66. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/__init__.py +0 -0
  67. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/deepst/__init__.py +0 -0
  68. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/deepst/adjacency.py +0 -0
  69. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/deepst/api.py +0 -0
  70. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/deepst/augment.py +0 -0
  71. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/deepst/image_features.py +0 -0
  72. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/deepst/model.py +0 -0
  73. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/deepst/runner.py +0 -0
  74. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/deepst/trainer.py +0 -0
  75. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/spagcn/__init__.py +0 -0
  76. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/spagcn/adjacency.py +0 -0
  77. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/spagcn/api.py +0 -0
  78. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/spagcn/layers.py +0 -0
  79. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/spagcn/models.py +0 -0
  80. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/spagcn/morans.py +0 -0
  81. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/spagcn/spagcn.py +0 -0
  82. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/spagcn/svg.py +0 -0
  83. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/spatialde/__init__.py +0 -0
  84. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/spatialde/api.py +0 -0
  85. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/spatialde/kernels.py +0 -0
  86. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/domain/spatialde/score_test.py +0 -0
  87. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/dynamics/__init__.py +0 -0
  88. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/dynamics/generank.py +0 -0
  89. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/dynamics/linreg.py +0 -0
  90. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/dynamics/moments.py +0 -0
  91. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/dynamics/optimization.py +0 -0
  92. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/dynamics/parallel.py +0 -0
  93. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/dynamics/preprocess.py +0 -0
  94. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/dynamics/pseudotime.py +0 -0
  95. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/dynamics/transition.py +0 -0
  96. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/dynamics/utils.py +0 -0
  97. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/dynamics/velocity.py +0 -0
  98. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/grn/__init__.py +0 -0
  99. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/grn/infergrn.py +0 -0
  100. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/grn/modules.py +0 -0
  101. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/grn/prune.py +0 -0
  102. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/grn/regressors.py +0 -0
  103. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/grn/utils.py +0 -0
  104. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/help.py +0 -0
  105. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/image/__init__.py +0 -0
  106. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/image/augment.py +0 -0
  107. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/image/axis.py +0 -0
  108. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/image/channel.py +0 -0
  109. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/image/compensation.py +0 -0
  110. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/image/density.py +0 -0
  111. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/image/segmentation.py +0 -0
  112. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/image/tissue.py +0 -0
  113. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/image/transform.py +0 -0
  114. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/__init__.py +0 -0
  115. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/aggregate.py +0 -0
  116. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/cellnest/__init__.py +0 -0
  117. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/cellnest/api.py +0 -0
  118. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/cellnest/gat.py +0 -0
  119. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/cellnest/intra.py +0 -0
  120. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/cellnest/model.py +0 -0
  121. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/cellnest/plotting.py +0 -0
  122. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/cellnest/postprocess.py +0 -0
  123. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/cellnest/preprocess.py +0 -0
  124. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/cellnest/relay.py +0 -0
  125. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/cellnest/stats.py +0 -0
  126. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/cellnest/train.py +0 -0
  127. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/cellnest/utils.py +0 -0
  128. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/icnet/__init__.py +0 -0
  129. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/icnet/construction.py +0 -0
  130. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/icnet/importance.py +0 -0
  131. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/icnet/ligand.py +0 -0
  132. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/icnet/metrics.py +0 -0
  133. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/icnet/pagerank.py +0 -0
  134. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/method.py +0 -0
  135. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/methods/__init__.py +0 -0
  136. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/methods/cellchat.py +0 -0
  137. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/methods/cellphonedb.py +0 -0
  138. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/methods/connectome.py +0 -0
  139. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/methods/geomean.py +0 -0
  140. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/methods/logfc.py +0 -0
  141. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/methods/natmi.py +0 -0
  142. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/methods/rank_aggregate.py +0 -0
  143. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/methods/scseqcomm.py +0 -0
  144. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/methods/singlecellsignalr.py +0 -0
  145. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/pipeline.py +0 -0
  146. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/preprocess.py +0 -0
  147. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/resources.py +0 -0
  148. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/utils.py +0 -0
  149. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/metacell/__init__.py +0 -0
  150. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/metacell/engine.py +0 -0
  151. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/metacell/model.py +0 -0
  152. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/metacell/utils.py +0 -0
  153. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/__init__.py +0 -0
  154. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/factorization/__init__.py +0 -0
  155. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/factorization/bd.py +0 -0
  156. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/factorization/bmf.py +0 -0
  157. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/factorization/icm.py +0 -0
  158. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/factorization/lfnmf.py +0 -0
  159. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/factorization/lsnmf.py +0 -0
  160. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/factorization/nmf.py +0 -0
  161. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/factorization/nsnmf.py +0 -0
  162. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/factorization/pmf.py +0 -0
  163. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/factorization/pmfcc.py +0 -0
  164. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/factorization/psmf.py +0 -0
  165. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/factorization/sepnmf.py +0 -0
  166. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/factorization/snmf.py +0 -0
  167. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/factorization/snmnmf.py +0 -0
  168. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/seeding/__init__.py +0 -0
  169. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/seeding/fixed.py +0 -0
  170. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/seeding/nndsvd.py +0 -0
  171. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/seeding/random.py +0 -0
  172. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/seeding/random_c.py +0 -0
  173. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/methods/seeding/random_vcol.py +0 -0
  174. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/models/__init__.py +0 -0
  175. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/models/mf_fit.py +0 -0
  176. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/models/mf_track.py +0 -0
  177. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/models/nmf.py +0 -0
  178. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/models/nmf_mm.py +0 -0
  179. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/models/nmf_ns.py +0 -0
  180. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/models/nmf_std.py +0 -0
  181. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/models/smf.py +0 -0
  182. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/utils/__init__.py +0 -0
  183. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/utils/linalg.py +0 -0
  184. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/nmf/utils/utils.py +0 -0
  185. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/parser/__init__.py +0 -0
  186. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/parser/converter.py +0 -0
  187. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/parser/rds.py +0 -0
  188. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/parser/seurat.py +0 -0
  189. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/peaks/__init__.py +0 -0
  190. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/peaks/callpeak.py +0 -0
  191. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/peaks/common.py +0 -0
  192. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/peaks/coverage.py +0 -0
  193. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/peaks/footprint.py +0 -0
  194. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/peaks/idr/__init__.py +0 -0
  195. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/peaks/idr/constants.py +0 -0
  196. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/peaks/idr/idr.py +0 -0
  197. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/peaks/idr/invcdf.pyx +0 -0
  198. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/peaks/idr/optimization.py +0 -0
  199. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/peaks/idr/utils.py +0 -0
  200. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/peaks/linkage.py +0 -0
  201. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/peaks/motif.py +0 -0
  202. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/peaks/sequence.py +0 -0
  203. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/plotting/__init__.py +0 -0
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  405. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/spatial/classifier.py +0 -0
  406. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/spatial/hd.py +0 -0
  407. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/spatial/interac.py +0 -0
  408. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/spatial/ligrec.py +0 -0
  409. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/spatial/mif.py +0 -0
  410. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/spatial/nhood.py +0 -0
  411. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/spatial/niche.py +0 -0
  412. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/spatial/ometiff.py +0 -0
  413. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/spatial/pattern.py +0 -0
  414. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/spatial/ripley.py +0 -0
  415. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/spatial/snn.py +0 -0
  416. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/spatial/tmap.py +0 -0
  417. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/spatial/utils.py +0 -0
  418. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/spatial/visium.py +0 -0
  419. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/spatial/xenium.py +0 -0
  420. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/trajectory/__init__.py +0 -0
  421. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/trajectory/cytotrace.py +0 -0
  422. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/trajectory/elpi.py +0 -0
  423. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/trajectory/pcurve.py +0 -0
  424. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/trajectory/pseudotime.py +0 -0
  425. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/trajectory/root.py +0 -0
  426. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/trajectory/trace.py +0 -0
  427. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/transfer/__init__.py +0 -0
  428. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/transfer/atlas.py +0 -0
  429. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/utils.py +0 -0
  430. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/wgcna/__init__.py +0 -0
  431. {exprmat-0.2.78 → exprmat-0.2.80}/exprmat/wgcna/core.py +0 -0
  432. {exprmat-0.2.78 → exprmat-0.2.80}/license +0 -0
  433. {exprmat-0.2.78 → exprmat-0.2.80}/readme.md +0 -0
  434. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2/Cargo.toml +0 -0
  435. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2/license +0 -0
  436. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2/readme +0 -0
  437. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2/src/call_peaks.rs +0 -0
  438. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2/src/embedding.rs +0 -0
  439. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2/src/export.rs +0 -0
  440. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2/src/knn.rs +0 -0
  441. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2/src/lib.rs +0 -0
  442. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2/src/motif.rs +0 -0
  443. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2/src/network.rs +0 -0
  444. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2/src/preprocessing.rs +0 -0
  445. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2/src/utils/anndata.rs +0 -0
  446. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2/src/utils.rs +0 -0
  447. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/Cargo.toml +0 -0
  448. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/embedding.rs +0 -0
  449. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/export.rs +0 -0
  450. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/feature_count/counter.rs +0 -0
  451. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/feature_count/data_iter.rs +0 -0
  452. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/feature_count/matrix.rs +0 -0
  453. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/feature_count/mod.rs +0 -0
  454. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/genome.rs +0 -0
  455. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/lib.rs +0 -0
  456. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/motif.rs +0 -0
  457. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/network.rs +0 -0
  458. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/preprocessing/bam/flagstat.rs +0 -0
  459. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/preprocessing/bam/header.rs +0 -0
  460. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/preprocessing/bam/mark_duplicates.rs +0 -0
  461. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/preprocessing/bam.rs +0 -0
  462. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/preprocessing/import.rs +0 -0
  463. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/preprocessing/mod.rs +0 -0
  464. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/preprocessing/qc.rs +0 -0
  465. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/utils/knn.rs +0 -0
  466. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/utils/mod.rs +0 -0
  467. {exprmat-0.2.78 → exprmat-0.2.80}/snapatac2-core/src/utils/similarity.rs +0 -0
{exprmat-0.2.78 → exprmat-0.2.80}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: exprmat
3
- Version: 0.2.78
3
+ Version: 0.2.80
4
4
  Classifier: Programming Language :: Rust
5
5
  Classifier: Programming Language :: Python :: Implementation :: CPython
6
6
  Classifier: Programming Language :: Python :: Implementation :: PyPy
{exprmat-0.2.78 → exprmat-0.2.80}/exprmat/__init__.py RENAMED
@@ -106,6 +106,9 @@ default_finders = [
106
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  'exprmat.config',
107
107
  '.exprmat.config',
108
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  '.exprmatrc',
109
+ _os.path.join(str(_os.environ.get("CONDA_PREFIX") or ''), 'exprmat.config'),
110
+ _os.path.join(str(_os.environ.get("CONDA_PREFIX") or ''), '.exprmat.config'),
111
+ _os.path.join(str(_os.environ.get("CONDA_PREFIX") or ''), '.exprmatrc'),
109
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  _os.path.join(str(_pathlib.Path.home()), 'exprmat.config'),
110
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  _os.path.join(str(_pathlib.Path.home()), '.exprmat.config'),
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  _os.path.join(str(_pathlib.Path.home()), '.exprmatrc')
{exprmat-0.2.78 → exprmat-0.2.80}/exprmat/reader/rna/proportion.py RENAMED
@@ -468,7 +468,6 @@ def rna_covar_module_cophenetic(
468
468
  def rna_plot_proportion(
469
469
  adata: ad.AnnData, sample_name: str, spatial,
470
470
  major: str,
471
- order: list,
472
471
  minor: str,
473
472
  plot: str = 'bar',
474
473
  cmap: str = 'turbo',
@@ -476,7 +475,8 @@ def rna_plot_proportion(
476
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  figsize: tuple[float, float] = (5, 3),
477
476
  stacked: bool = False,
478
477
  wedge: float = 0.4,
479
- legend: bool = True
478
+ legend: bool = True,
479
+ order: list = None
480
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  ):
481
481
  """
482
482
  Plot cell-type proportions as a bar, pie, or donut chart.
{exprmat-0.2.78 → exprmat-0.2.80}/pyproject.toml RENAMED
@@ -18,7 +18,7 @@ description = "exprmat: Routines for expression matrices"
18
18
  readme = "readme.md"
19
19
  license = {file = "license"}
20
20
  requires-python = ">=3.10, <3.14"
21
- version = "0.2.78"
21
+ version = "0.2.80"
22
22
  authors = [
23
23
  {name = "Zheng Yang", email = "xornent@outlook.com"}
24
24
  ]
{exprmat-0.2.78 → exprmat-0.2.80}/Cargo.lock RENAMED
File without changes
{exprmat-0.2.78 → exprmat-0.2.80}/Cargo.toml RENAMED
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{exprmat-0.2.78 → exprmat-0.2.80}/exprmat/ansi.py RENAMED
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{exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/cre.py RENAMED
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{exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/icnet.py RENAMED
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{exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/io.py RENAMED
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{exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/lr.py RENAMED
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{exprmat-0.2.78 → exprmat-0.2.80}/exprmat/data/tf.py RENAMED
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{exprmat-0.2.78 → exprmat-0.2.80}/exprmat/grn/prune.py RENAMED
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{exprmat-0.2.78 → exprmat-0.2.80}/exprmat/grn/utils.py RENAMED
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{exprmat-0.2.78 → exprmat-0.2.80}/exprmat/help.py RENAMED
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{exprmat-0.2.78 → exprmat-0.2.80}/exprmat/image/axis.py RENAMED
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{exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/method.py RENAMED
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{exprmat-0.2.78 → exprmat-0.2.80}/exprmat/lr/utils.py RENAMED
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{exprmat-0.2.78 → exprmat-0.2.80}/exprmat/parser/rds.py RENAMED
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