exprmat 0.1.7__tar.gz → 0.1.8__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (112) hide show
  1. {exprmat-0.1.7 → exprmat-0.1.8}/PKG-INFO +1 -1
  2. exprmat-0.1.8/exprmat/data/hsa/entrez.tsv.gz +0 -0
  3. exprmat-0.1.8/exprmat/data/hsa/mapping-ensembl.pkl +0 -0
  4. exprmat-0.1.8/exprmat/data/hsa/mapping-name.pkl +0 -0
  5. exprmat-0.1.8/exprmat/data/hsa/taxa +1 -0
  6. exprmat-0.1.8/exprmat/data/mmu/genesets/all.gmt +17789 -0
  7. exprmat-0.1.8/exprmat/data/mmu/genesets/biocarta.gmt +252 -0
  8. exprmat-0.1.8/exprmat/data/mmu/genesets/bp.gmt +7713 -0
  9. exprmat-0.1.8/exprmat/data/mmu/genesets/cc.gmt +1028 -0
  10. exprmat-0.1.8/exprmat/data/mmu/genesets/chemical-perturb.gmt +980 -0
  11. exprmat-0.1.8/exprmat/data/mmu/genesets/hallmark.gmt +50 -0
  12. exprmat-0.1.8/exprmat/data/mmu/genesets/m2.gmt +1730 -0
  13. exprmat-0.1.8/exprmat/data/mmu/genesets/markers.gmt +233 -0
  14. exprmat-0.1.8/exprmat/data/mmu/genesets/mf.gmt +1845 -0
  15. exprmat-0.1.8/exprmat/data/mmu/genesets/microrna.gmt +1768 -0
  16. exprmat-0.1.8/exprmat/data/mmu/genesets/mpt.gmt +92 -0
  17. exprmat-0.1.8/exprmat/data/mmu/genesets/positional.gmt +341 -0
  18. exprmat-0.1.8/exprmat/data/mmu/genesets/reactome.gmt +1289 -0
  19. exprmat-0.1.8/exprmat/data/mmu/genesets/transcript-factors.gmt +279 -0
  20. exprmat-0.1.8/exprmat/data/mmu/genesets/wikipathway.gmt +189 -0
  21. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/descriptive/gse.py +2 -2
  22. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat.egg-info/PKG-INFO +1 -1
  23. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat.egg-info/SOURCES.txt +19 -0
  24. {exprmat-0.1.7 → exprmat-0.1.8}/setup.py +2 -2
  25. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/__init__.py +0 -0
  26. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/ansi.py +0 -0
  27. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/clustering/__init__.py +0 -0
  28. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/clustering/leiden.py +0 -0
  29. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/clustering/rogue.py +0 -0
  30. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/clustering/spectral.py +0 -0
  31. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/clustering/summary.py +0 -0
  32. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/clustering/utils.py +0 -0
  33. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/cnv/__init__.py +0 -0
  34. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/cnv/cnvscore.py +0 -0
  35. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/cnv/infercnv.py +0 -0
  36. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/configuration.py +0 -0
  37. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/__init__.py +0 -0
  38. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/delim.py +0 -0
  39. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/finders.py +0 -0
  40. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/geneset.py +0 -0
  41. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/gff.py +0 -0
  42. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/all.gmt +0 -0
  43. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/bp.gmt +0 -0
  44. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/cancer-modules.gmt +0 -0
  45. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/cancer-neighborhoods.gmt +0 -0
  46. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/cancer.gmt +0 -0
  47. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/cc.gmt +0 -0
  48. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/chemical-perturb.gmt +0 -0
  49. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/hallmark.gmt +0 -0
  50. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/human-phenotype-ontology.gmt +0 -0
  51. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/immune-perturb.gmt +0 -0
  52. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/mf.gmt +0 -0
  53. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/microrna.gmt +0 -0
  54. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/oncogenic.gmt +0 -0
  55. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/pathways.gmt +0 -0
  56. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/positional.gmt +0 -0
  57. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/single-cell.gmt +0 -0
  58. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/transcript-factors.gmt +0 -0
  59. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genesets/vaccine.gmt +0 -0
  60. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/hsa/genome.tsv.gz +0 -0
  61. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/mmu/entrez.tsv.gz +0 -0
  62. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/mmu/genome.tsv.gz +0 -0
  63. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/mmu/mapping-ensembl.pkl +0 -0
  64. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/mmu/mapping-name.pkl +0 -0
  65. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/mmu/taxa +0 -0
  66. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/private.py +0 -0
  67. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/data/ranges.py +0 -0
  68. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/descriptive/__init__.py +0 -0
  69. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/descriptive/de.py +0 -0
  70. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/descriptive/kde.py +0 -0
  71. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/plotting/__init__.py +0 -0
  72. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/plotting/cnv.py +0 -0
  73. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/plotting/de.py +0 -0
  74. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/plotting/expression.py +0 -0
  75. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/plotting/palettes.py +0 -0
  76. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/plotting/summary.py +0 -0
  77. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/preprocessing/__init__.py +0 -0
  78. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/preprocessing/doublets/__init__.py +0 -0
  79. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/preprocessing/doublets/composite.py +0 -0
  80. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/preprocessing/doublets/scrublet.py +0 -0
  81. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/preprocessing/filter.py +0 -0
  82. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/preprocessing/integrate.py +0 -0
  83. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/preprocessing/linear.py +0 -0
  84. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/preprocessing/normal.py +0 -0
  85. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/preprocessing/plot.py +0 -0
  86. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/preprocessing/qc.py +0 -0
  87. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/preprocessing/sctransform/__init__.py +0 -0
  88. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/preprocessing/sctransform/estimate.py +0 -0
  89. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/preprocessing/sctransform/ksmooth.py +0 -0
  90. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/preprocessing/sctransform/residual.py +0 -0
  91. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/preprocessing/sctransform/transform.py +0 -0
  92. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/preprocessing/sparse.py +0 -0
  93. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/preprocessing/uniform.py +0 -0
  94. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/reader/__init__.py +0 -0
  95. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/reader/experiment.py +0 -0
  96. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/reader/matcher.py +0 -0
  97. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/reader/metadata.py +0 -0
  98. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/reduction/__init__.py +0 -0
  99. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/reduction/forceatlas.py +0 -0
  100. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/reduction/mde.py +0 -0
  101. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/reduction/nn.py +0 -0
  102. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/reduction/pca.py +0 -0
  103. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/reduction/plot.py +0 -0
  104. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/reduction/pumap.py +0 -0
  105. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/reduction/tsne.py +0 -0
  106. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/reduction/umap.py +0 -0
  107. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat/utils.py +0 -0
  108. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat.egg-info/dependency_links.txt +0 -0
  109. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat.egg-info/not-zip-safe +0 -0
  110. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat.egg-info/requires.txt +0 -0
  111. {exprmat-0.1.7 → exprmat-0.1.8}/exprmat.egg-info/top_level.txt +0 -0
  112. {exprmat-0.1.7 → exprmat-0.1.8}/setup.cfg +0 -0
{exprmat-0.1.7 → exprmat-0.1.8}/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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  Name: exprmat
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- Version: 0.1.7
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+ Version: 0.1.8
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  Summary: routines to process expression matrices
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  Home-page: https://github.com/yang-z-03/exprmat
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  Author: Zheng Yang
exprmat-0.1.8/exprmat/data/hsa/taxa ADDED
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+ 9606