exprmat 0.1.57__tar.gz → 0.1.58__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {exprmat-0.1.57 → exprmat-0.1.58}/PKG-INFO +1 -1
- exprmat-0.1.58/exprmat/plotting/expression.py +853 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/gse.py +3 -3
- exprmat-0.1.58/exprmat/plotting/knee.py +50 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/preprocessing/background/__init__.py +1 -4
- exprmat-0.1.58/exprmat/preprocessing/background/dirichlet_multinomial.py +179 -0
- exprmat-0.1.58/exprmat/preprocessing/background/emptydrops.py +242 -0
- exprmat-0.1.58/exprmat/preprocessing/background/multinomial.py +108 -0
- exprmat-0.1.58/exprmat/preprocessing/background/sgt.py +127 -0
- exprmat-0.1.58/exprmat/reader/experiment.py +7806 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/reader/matcher.py +5 -14
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/reader/static.py +10 -3
- {exprmat-0.1.57 → exprmat-0.1.58}/pyproject.toml +1 -1
- exprmat-0.1.57/exprmat/plotting/expression.py +0 -272
- exprmat-0.1.57/exprmat/preprocessing/background/emptydrops.py +0 -349
- exprmat-0.1.57/exprmat/preprocessing/background/knee.py +0 -170
- exprmat-0.1.57/exprmat/preprocessing/background/sgt.py +0 -124
- exprmat-0.1.57/exprmat/reader/experiment.py +0 -3070
- {exprmat-0.1.57 → exprmat-0.1.58}/Cargo.lock +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/Cargo.toml +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/ansi.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/clustering/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/clustering/cnmf.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/clustering/dbscan.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/clustering/gating.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/clustering/kmeans.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/clustering/leiden.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/clustering/nmf.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/clustering/rogue.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/clustering/sc3.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/clustering/seriation.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/clustering/spectral.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/clustering/utils.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/cnv/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/cnv/cnvscore.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/cnv/infercnv.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/configuration.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/data/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/data/cistarget.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/data/cre.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/data/finders.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/data/geneset.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/data/icnet.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/data/io.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/data/lr.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/data/orthologs.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/data/presets.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/data/signature.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/data/tf.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/deconv/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/deconv/deconv.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/deconv/simulation.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/descriptive/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/descriptive/aggregate.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/descriptive/atac.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/descriptive/aucell.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/descriptive/composition.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/descriptive/covar.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/descriptive/de.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/descriptive/gse.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/descriptive/kde.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/descriptive/recovery.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/descriptive/sccoda.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/descriptive/summary.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/descriptive/tcr.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/deseq/dataset.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/deseq/gridsearch.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/deseq/inference.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/deseq/preprocessing.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/deseq/stats.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/deseq/utils.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/dynamics/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/dynamics/generank.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/dynamics/linreg.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/dynamics/moments.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/dynamics/optimization.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/dynamics/parallel.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/dynamics/preprocess.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/dynamics/pseudotime.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/dynamics/transition.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/dynamics/utils.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/dynamics/velocity.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/grn/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/grn/infergrn.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/grn/modules.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/grn/prune.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/grn/regressors.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/grn/utils.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/image/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/image/align.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/image/channel.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/image/equalize.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/aggregate.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/icnet/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/icnet/construction.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/icnet/importance.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/icnet/ligand.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/icnet/metrics.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/icnet/pagerank.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/method.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/methods/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/methods/cellchat.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/methods/cellphonedb.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/methods/connectome.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/methods/geomean.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/methods/logfc.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/methods/natmi.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/methods/rank_aggregate.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/methods/scseqcomm.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/methods/singlecellsignalr.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/pipeline.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/preprocess.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/resources.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/lr/utils.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/metacell/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/metacell/engine.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/metacell/model.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/metacell/utils.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/factorization/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/factorization/bd.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/factorization/bmf.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/factorization/icm.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/factorization/lfnmf.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/factorization/lsnmf.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/factorization/nmf.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/factorization/nsnmf.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/factorization/pmf.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/factorization/pmfcc.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/factorization/psmf.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/factorization/sepnmf.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/factorization/snmf.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/factorization/snmnmf.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/seeding/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/seeding/fixed.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/seeding/nndsvd.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/seeding/random.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/seeding/random_c.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/methods/seeding/random_vcol.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/models/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/models/mf_fit.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/models/mf_track.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/models/nmf.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/models/nmf_mm.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/models/nmf_ns.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/models/nmf_std.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/models/smf.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/utils/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/utils/linalg.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/nmf/utils/utils.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/parser/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/parser/converter.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/parser/rds.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/parser/seurat.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/peaks/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/peaks/callpeak.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/peaks/common.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/peaks/coverage.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/peaks/footprint.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/peaks/idr/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/peaks/idr/constants.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/peaks/idr/idr.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/peaks/idr/invcdf.pyx +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/peaks/idr/optimization.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/peaks/idr/utils.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/peaks/linkage.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/peaks/motif.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/peaks/sequence.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/atac.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/cnmf.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/cnv.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/A.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/B.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/C.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/D.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/E.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/F.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/G.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/H.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/I.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/J.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/K.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/L.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/M.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/N.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/O.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/P.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/Q.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/R.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/S.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/T.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/U.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/V.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/W.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/X.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/Y.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/data/Z.pk +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/de.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/icnet.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/lr.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/matrix.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/milestone.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/network.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/palettes.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/sankey.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/sequence.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/summary.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/track.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/trajectory.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/utils.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/plotting/velocity.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/preprocessing/__init__.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/preprocessing/background/correction.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/preprocessing/background/estimation.py +0 -0
- {exprmat-0.1.57 → exprmat-0.1.58}/exprmat/preprocessing/background/soupx.py +0 -0
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