exprmat 0.1.51__tar.gz → 0.1.53__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (243) hide show
  1. {exprmat-0.1.51 → exprmat-0.1.53}/PKG-INFO +25 -2
  2. {exprmat-0.1.51 → exprmat-0.1.53}/pyproject.toml +24 -2
  3. {exprmat-0.1.51 → exprmat-0.1.53}/readme.md +9 -0
  4. {exprmat-0.1.51 → exprmat-0.1.53}/Cargo.lock +0 -0
  5. {exprmat-0.1.51 → exprmat-0.1.53}/Cargo.toml +0 -0
  6. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/__init__.py +0 -0
  7. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/ansi.py +0 -0
  8. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/clustering/__init__.py +0 -0
  9. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/clustering/cnmf.py +0 -0
  10. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/clustering/dbscan.py +0 -0
  11. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/clustering/gating.py +0 -0
  12. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/clustering/kmeans.py +0 -0
  13. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/clustering/leiden.py +0 -0
  14. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/clustering/nmf.py +0 -0
  15. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/clustering/rogue.py +0 -0
  16. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/clustering/sc3.py +0 -0
  17. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/clustering/seriation.py +0 -0
  18. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/clustering/spectral.py +0 -0
  19. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/clustering/utils.py +0 -0
  20. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/cnv/__init__.py +0 -0
  21. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/cnv/cnvscore.py +0 -0
  22. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/cnv/infercnv.py +0 -0
  23. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/configuration.py +0 -0
  24. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/data/__init__.py +0 -0
  25. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/data/cistarget.py +0 -0
  26. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/data/cre.py +0 -0
  27. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/data/finders.py +0 -0
  28. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/data/geneset.py +0 -0
  29. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/data/icnet.py +0 -0
  30. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/data/io.py +0 -0
  31. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/data/lr.py +0 -0
  32. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/data/orthologs.py +0 -0
  33. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/data/presets.py +0 -0
  34. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/data/signature.py +0 -0
  35. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/data/tf.py +0 -0
  36. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/deconv/__init__.py +0 -0
  37. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/deconv/deconv.py +0 -0
  38. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/deconv/simulation.py +0 -0
  39. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/descriptive/__init__.py +0 -0
  40. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/descriptive/aggregate.py +0 -0
  41. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/descriptive/atac.py +0 -0
  42. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/descriptive/aucell.py +0 -0
  43. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/descriptive/de.py +0 -0
  44. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/descriptive/gse.py +0 -0
  45. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/descriptive/kde.py +0 -0
  46. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/descriptive/recovery.py +0 -0
  47. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/descriptive/summary.py +0 -0
  48. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/descriptive/tcr.py +0 -0
  49. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/deseq/dataset.py +0 -0
  50. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/deseq/gridsearch.py +0 -0
  51. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/deseq/inference.py +0 -0
  52. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/deseq/preprocessing.py +0 -0
  53. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/deseq/stats.py +0 -0
  54. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/deseq/utils.py +0 -0
  55. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/dynamics/__init__.py +0 -0
  56. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/dynamics/generank.py +0 -0
  57. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/dynamics/linreg.py +0 -0
  58. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/dynamics/moments.py +0 -0
  59. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/dynamics/optimization.py +0 -0
  60. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/dynamics/parallel.py +0 -0
  61. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/dynamics/preprocess.py +0 -0
  62. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/dynamics/pseudotime.py +0 -0
  63. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/dynamics/transition.py +0 -0
  64. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/dynamics/utils.py +0 -0
  65. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/dynamics/velocity.py +0 -0
  66. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/grn/__init__.py +0 -0
  67. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/grn/infergrn.py +0 -0
  68. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/grn/modules.py +0 -0
  69. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/grn/prune.py +0 -0
  70. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/grn/regressors.py +0 -0
  71. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/grn/utils.py +0 -0
  72. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/image/__init__.py +0 -0
  73. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/image/align.py +0 -0
  74. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/__init__.py +0 -0
  75. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/aggregate.py +0 -0
  76. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/icnet/__init__.py +0 -0
  77. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/icnet/construction.py +0 -0
  78. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/icnet/importance.py +0 -0
  79. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/icnet/ligand.py +0 -0
  80. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/icnet/metrics.py +0 -0
  81. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/icnet/pagerank.py +0 -0
  82. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/method.py +0 -0
  83. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/methods/__init__.py +0 -0
  84. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/methods/cellchat.py +0 -0
  85. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/methods/cellphonedb.py +0 -0
  86. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/methods/connectome.py +0 -0
  87. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/methods/geomean.py +0 -0
  88. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/methods/logfc.py +0 -0
  89. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/methods/natmi.py +0 -0
  90. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/methods/rank_aggregate.py +0 -0
  91. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/methods/scseqcomm.py +0 -0
  92. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/methods/singlecellsignalr.py +0 -0
  93. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/pipeline.py +0 -0
  94. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/preprocess.py +0 -0
  95. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/resources.py +0 -0
  96. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/lr/utils.py +0 -0
  97. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/metacell/__init__.py +0 -0
  98. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/metacell/engine.py +0 -0
  99. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/metacell/model.py +0 -0
  100. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/metacell/utils.py +0 -0
  101. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/peaks/__init__.py +0 -0
  102. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/peaks/callpeak.py +0 -0
  103. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/peaks/common.py +0 -0
  104. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/peaks/coverage.py +0 -0
  105. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/peaks/footprint.py +0 -0
  106. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/peaks/idr/__init__.py +0 -0
  107. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/peaks/idr/constants.py +0 -0
  108. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/peaks/idr/idr.py +0 -0
  109. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/peaks/idr/invcdf.pyx +0 -0
  110. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/peaks/idr/optimization.py +0 -0
  111. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/peaks/idr/utils.py +0 -0
  112. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/peaks/linkage.py +0 -0
  113. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/peaks/motif.py +0 -0
  114. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/peaks/sequence.py +0 -0
  115. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/__init__.py +0 -0
  116. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/atac.py +0 -0
  117. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/cnmf.py +0 -0
  118. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/cnv.py +0 -0
  119. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/A.pk +0 -0
  120. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/B.pk +0 -0
  121. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/C.pk +0 -0
  122. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/D.pk +0 -0
  123. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/E.pk +0 -0
  124. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/F.pk +0 -0
  125. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/G.pk +0 -0
  126. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/H.pk +0 -0
  127. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/I.pk +0 -0
  128. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/J.pk +0 -0
  129. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/K.pk +0 -0
  130. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/L.pk +0 -0
  131. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/M.pk +0 -0
  132. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/N.pk +0 -0
  133. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/O.pk +0 -0
  134. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/P.pk +0 -0
  135. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/Q.pk +0 -0
  136. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/R.pk +0 -0
  137. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/S.pk +0 -0
  138. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/T.pk +0 -0
  139. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/U.pk +0 -0
  140. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/V.pk +0 -0
  141. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/W.pk +0 -0
  142. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/X.pk +0 -0
  143. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/Y.pk +0 -0
  144. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/data/Z.pk +0 -0
  145. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/de.py +0 -0
  146. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/expression.py +0 -0
  147. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/gse.py +0 -0
  148. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/icnet.py +0 -0
  149. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/lr.py +0 -0
  150. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/milestone.py +0 -0
  151. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/palettes.py +0 -0
  152. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/sankey.py +0 -0
  153. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/sequence.py +0 -0
  154. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/summary.py +0 -0
  155. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/track.py +0 -0
  156. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/trajectory.py +0 -0
  157. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/utils.py +0 -0
  158. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/plotting/velocity.py +0 -0
  159. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/__init__.py +0 -0
  160. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/doublets/__init__.py +0 -0
  161. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/doublets/composite.py +0 -0
  162. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/doublets/scrublet.py +0 -0
  163. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/emptydrops.py +0 -0
  164. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/filter.py +0 -0
  165. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/impute/__init__.py +0 -0
  166. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/impute/magic.py +0 -0
  167. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/integrate.py +0 -0
  168. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/linear.py +0 -0
  169. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/normal.py +0 -0
  170. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/plot.py +0 -0
  171. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/qc.py +0 -0
  172. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/sctransform/__init__.py +0 -0
  173. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/sctransform/estimate.py +0 -0
  174. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/sctransform/ksmooth.py +0 -0
  175. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/sctransform/residual.py +0 -0
  176. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/sctransform/transform.py +0 -0
  177. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/sparse.py +0 -0
  178. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/preprocessing/uniform.py +0 -0
  179. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reader/__init__.py +0 -0
  180. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reader/conversions.py +0 -0
  181. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reader/experiment.py +0 -0
  182. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reader/matcher.py +0 -0
  183. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reader/metadata.py +0 -0
  184. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reader/spatial.py +0 -0
  185. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reader/static.py +0 -0
  186. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reader/updater.py +0 -0
  187. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reduction/__init__.py +0 -0
  188. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reduction/diffmap.py +0 -0
  189. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reduction/forceatlas.py +0 -0
  190. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reduction/mde.py +0 -0
  191. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reduction/nn.py +0 -0
  192. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reduction/outliers.py +0 -0
  193. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reduction/pca.py +0 -0
  194. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reduction/plot.py +0 -0
  195. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reduction/scvi.py +0 -0
  196. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reduction/spectral.py +0 -0
  197. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reduction/tsne.py +0 -0
  198. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/reduction/umap.py +0 -0
  199. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/trajectory/__init__.py +0 -0
  200. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/trajectory/cytotrace.py +0 -0
  201. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/trajectory/elpi.py +0 -0
  202. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/trajectory/pcurve.py +0 -0
  203. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/trajectory/pseudotime.py +0 -0
  204. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/trajectory/root.py +0 -0
  205. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/trajectory/trace.py +0 -0
  206. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/transfer/__init__.py +0 -0
  207. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/transfer/atlas.py +0 -0
  208. {exprmat-0.1.51 → exprmat-0.1.53}/exprmat/utils.py +0 -0
  209. {exprmat-0.1.51 → exprmat-0.1.53}/license +0 -0
  210. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2/Cargo.toml +0 -0
  211. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2/license +0 -0
  212. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2/readme +0 -0
  213. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2/src/call_peaks.rs +0 -0
  214. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2/src/embedding.rs +0 -0
  215. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2/src/export.rs +0 -0
  216. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2/src/knn.rs +0 -0
  217. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2/src/lib.rs +0 -0
  218. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2/src/motif.rs +0 -0
  219. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2/src/network.rs +0 -0
  220. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2/src/preprocessing.rs +0 -0
  221. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2/src/utils/anndata.rs +0 -0
  222. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2/src/utils.rs +0 -0
  223. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/Cargo.toml +0 -0
  224. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/embedding.rs +0 -0
  225. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/export.rs +0 -0
  226. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/feature_count/counter.rs +0 -0
  227. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/feature_count/data_iter.rs +0 -0
  228. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/feature_count/matrix.rs +0 -0
  229. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/feature_count/mod.rs +0 -0
  230. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/genome.rs +0 -0
  231. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/lib.rs +0 -0
  232. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/motif.rs +0 -0
  233. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/network.rs +0 -0
  234. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/preprocessing/bam/flagstat.rs +0 -0
  235. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/preprocessing/bam/header.rs +0 -0
  236. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/preprocessing/bam/mark_duplicates.rs +0 -0
  237. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/preprocessing/bam.rs +0 -0
  238. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/preprocessing/import.rs +0 -0
  239. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/preprocessing/mod.rs +0 -0
  240. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/preprocessing/qc.rs +0 -0
  241. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/utils/knn.rs +0 -0
  242. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/utils/mod.rs +0 -0
  243. {exprmat-0.1.51 → exprmat-0.1.53}/snapatac2-core/src/utils/similarity.rs +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: exprmat
3
- Version: 0.1.51
3
+ Version: 0.1.53
4
4
  Classifier: Programming Language :: Rust
5
5
  Classifier: Programming Language :: Python :: Implementation :: CPython
6
6
  Classifier: Programming Language :: Python :: Implementation :: PyPy
@@ -96,12 +96,26 @@ Requires-Dist: cuvs-cu12==25.8.* ; extra == 'cuda12'
96
96
  Requires-Dist: nx-cugraph-cu12==25.8.* ; extra == 'cuda12'
97
97
  Requires-Dist: cupy-cuda12x ; extra == 'cuda12'
98
98
  Requires-Dist: rapids-singlecell ; extra == 'cuda12'
99
+ Requires-Dist: cudf-cu13==25.12.* ; extra == 'cuda13'
100
+ Requires-Dist: dask-cudf-cu13==25.12.* ; extra == 'cuda13'
101
+ Requires-Dist: cuml-cu13==25.12.* ; extra == 'cuda13'
102
+ Requires-Dist: cugraph-cu13==25.12.* ; extra == 'cuda13'
103
+ Requires-Dist: nx-cugraph-cu13==25.12.* ; extra == 'cuda13'
104
+ Requires-Dist: cuxfilter-cu13==25.12.* ; extra == 'cuda13'
105
+ Requires-Dist: cucim-cu13==25.12.* ; extra == 'cuda13'
106
+ Requires-Dist: pylibraft-cu13==25.12.* ; extra == 'cuda13'
107
+ Requires-Dist: raft-dask-cu13==25.12.* ; extra == 'cuda13'
108
+ Requires-Dist: cuvs-cu13==25.12.* ; extra == 'cuda13'
109
+ Requires-Dist: nx-cugraph-cu13==25.12.* ; extra == 'cuda13'
110
+ Requires-Dist: cupy-cuda13x ; extra == 'cuda13'
111
+ Requires-Dist: rapids-singlecell ; extra == 'cuda13'
99
112
  Provides-Extra: dev
100
113
  Provides-Extra: cuda12
114
+ Provides-Extra: cuda13
101
115
  License-File: license
102
116
  Summary: exprmat: Routines for expression matrices
103
117
  Author-email: Zheng Yang <xornent@outlook.com>
104
- Requires-Python: >=3.10, <3.13
118
+ Requires-Python: >=3.10, <3.14
105
119
  Description-Content-Type: text/markdown; charset=UTF-8; variant=GFM
106
120
  Project-URL: Repository, https://github.com/yang-z-03/exprmat
107
121
 
@@ -171,6 +185,9 @@ for details)
171
185
  ### Licensing
172
186
 
173
187
  The original part of the source code is licensed under GNU GPLv3.
188
+ The database download tool bsync-fetch (developed as a dependency package for
189
+ exprmat, in python package `bincsync`) is only allowed for internal use and not
190
+ for re-distribution.
174
191
 
175
192
  ```
176
193
  exprmat - Routines to manipulate expression matrices
@@ -268,5 +285,11 @@ rna velocity fitting comes from the scvelo project
268
285
 
269
286
  BSD 3-Clause License
270
287
  Copyright (c) 2018, Theis Lab
288
+
289
+ directory /deseq comes from the pyDEseq2 project
290
+
291
+ MIT License
292
+ Copyright (c) 2022 Owkin
293
+
271
294
  ```
272
295
 
@@ -19,8 +19,8 @@ name = "exprmat"
19
19
  description = "exprmat: Routines for expression matrices"
20
20
  readme = "readme.md"
21
21
  license = {file = "license"}
22
- requires-python = ">=3.10, <3.13"
23
- version = "0.1.51"
22
+ requires-python = ">=3.10, <3.14"
23
+ version = "0.1.53"
24
24
  authors = [
25
25
  {name = "Zheng Yang", email = "xornent@outlook.com"}
26
26
  ]
@@ -139,5 +139,27 @@ cuda12 = [
139
139
  "rapids-singlecell"
140
140
  ]
141
141
 
142
+ cuda13 = [
143
+
144
+ # rapids
145
+ "cudf-cu13 == 25.12.*",
146
+ "dask-cudf-cu13 == 25.12.*",
147
+ "cuml-cu13 == 25.12.*",
148
+ "cugraph-cu13 == 25.12.*",
149
+ "nx-cugraph-cu13 == 25.12.*",
150
+ "cuxfilter-cu13 == 25.12.*",
151
+ "cucim-cu13 == 25.12.*",
152
+ "pylibraft-cu13 == 25.12.*",
153
+ "raft-dask-cu13 == 25.12.*",
154
+ "cuvs-cu13 == 25.12.*",
155
+ "nx-cugraph-cu13 == 25.12.*",
156
+
157
+ # cupy
158
+ "cupy-cuda13x",
159
+
160
+ # rapids-singlecell
161
+ "rapids-singlecell"
162
+ ]
163
+
142
164
  [project.urls]
143
165
  Repository = "https://github.com/yang-z-03/exprmat"
@@ -64,6 +64,9 @@ for details)
64
64
  ### Licensing
65
65
 
66
66
  The original part of the source code is licensed under GNU GPLv3.
67
+ The database download tool bsync-fetch (developed as a dependency package for
68
+ exprmat, in python package `bincsync`) is only allowed for internal use and not
69
+ for re-distribution.
67
70
 
68
71
  ```
69
72
  exprmat - Routines to manipulate expression matrices
@@ -161,4 +164,10 @@ rna velocity fitting comes from the scvelo project
161
164
 
162
165
  BSD 3-Clause License
163
166
  Copyright (c) 2018, Theis Lab
167
+
168
+ directory /deseq comes from the pyDEseq2 project
169
+
170
+ MIT License
171
+ Copyright (c) 2022 Owkin
172
+
164
173
  ```
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