exprmat 0.1.23__tar.gz → 0.1.24__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (244) hide show
  1. {exprmat-0.1.23 → exprmat-0.1.24}/PKG-INFO +4 -4
  2. {exprmat-0.1.23 → exprmat-0.1.24}/pyproject.toml +1 -1
  3. {exprmat-0.1.23 → exprmat-0.1.24}/readme.md +3 -3
  4. {exprmat-0.1.23 → exprmat-0.1.24}/Cargo.lock +0 -0
  5. {exprmat-0.1.23 → exprmat-0.1.24}/Cargo.toml +0 -0
  6. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/__init__.py +0 -0
  7. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/ansi.py +0 -0
  8. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/clustering/__init__.py +0 -0
  9. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/clustering/cnmf.py +0 -0
  10. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/clustering/leiden.py +0 -0
  11. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/clustering/nmf.py +0 -0
  12. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/clustering/rogue.py +0 -0
  13. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/clustering/seriation.py +0 -0
  14. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/clustering/spectral.py +0 -0
  15. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/clustering/utils.py +0 -0
  16. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/cnv/__init__.py +0 -0
  17. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/cnv/cnvscore.py +0 -0
  18. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/cnv/infercnv.py +0 -0
  19. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/configuration.py +0 -0
  20. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/__init__.py +0 -0
  21. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/cistarget.py +0 -0
  22. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/delim.py +0 -0
  23. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/finders.py +0 -0
  24. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/geneset.py +0 -0
  25. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/gff.py +0 -0
  26. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/entrez.tsv.gz +0 -0
  27. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/all.gmt +0 -0
  28. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/bp.gmt +0 -0
  29. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/cancer-modules.gmt +0 -0
  30. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/cancer-neighborhoods.gmt +0 -0
  31. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/cancer.gmt +0 -0
  32. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/cc.gmt +0 -0
  33. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/chemical-perturb.gmt +0 -0
  34. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/curated/macrophage-atlas.gmt +0 -0
  35. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/curated/t-cell-atlas.gmt +0 -0
  36. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/curated/t-cell-development.gmt +0 -0
  37. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/hallmark.gmt +0 -0
  38. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/human-phenotype-ontology.gmt +0 -0
  39. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/immune-perturb.gmt +0 -0
  40. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/kegg.gmt +0 -0
  41. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/mf.gmt +0 -0
  42. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/microrna.gmt +0 -0
  43. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/oncogenic.gmt +0 -0
  44. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/pathways.gmt +0 -0
  45. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/positional.gmt +0 -0
  46. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/single-cell.gmt +0 -0
  47. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/transcript-factors.gmt +0 -0
  48. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genesets/vaccine.gmt +0 -0
  49. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/genome.tsv.gz +0 -0
  50. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/lr/baccin2019 +0 -0
  51. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/lr/cellcall +0 -0
  52. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/lr/cellchatdb +0 -0
  53. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/lr/cellinker +0 -0
  54. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/lr/cellphonedb +0 -0
  55. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/lr/celltalkdb +0 -0
  56. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/lr/connectomedb2020 +0 -0
  57. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/lr/consensus +0 -0
  58. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/lr/embrace +0 -0
  59. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/lr/guide2pharma +0 -0
  60. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/lr/hpmr +0 -0
  61. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/lr/icellnet +0 -0
  62. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/lr/italk +0 -0
  63. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/lr/kirouac2010 +0 -0
  64. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/lr/lrdb +0 -0
  65. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/lr/ramilowski2015 +0 -0
  66. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/aca.tsv.gz +0 -0
  67. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/bta.tsv.gz +0 -0
  68. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/cel.tsv.gz +0 -0
  69. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/clu.tsv.gz +0 -0
  70. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/dme.tsv.gz +0 -0
  71. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/dre.tsv.gz +0 -0
  72. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/eca.tsv.gz +0 -0
  73. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/fca.tsv.gz +0 -0
  74. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/gga.tsv.gz +0 -0
  75. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/mdo.tsv.gz +0 -0
  76. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/mmu.tsv.gz +0 -0
  77. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/mmul.gz +0 -0
  78. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/oan.tsv.gz +0 -0
  79. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/ptr.tsv.gz +0 -0
  80. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/rno.tsv.gz +0 -0
  81. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/sce.tsv.gz +0 -0
  82. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/spo.tsv.gz +0 -0
  83. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/ssc.tsv.gz +0 -0
  84. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/orthologs/xla.tsv.gz +0 -0
  85. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/taxa +0 -0
  86. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/io.py +0 -0
  87. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/lr.py +0 -0
  88. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/entrez.tsv.gz +0 -0
  89. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/all.gmt +0 -0
  90. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/azimuth.gmt +0 -0
  91. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/biocarta.gmt +0 -0
  92. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/bp.gmt +0 -0
  93. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/cc.gmt +0 -0
  94. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/chemical-perturb.gmt +0 -0
  95. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/curated/cgas-sting.gmt +0 -0
  96. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/curated/cgas-targets.gmt +0 -0
  97. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/curated/nfkb-downregulated.gmt +0 -0
  98. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/curated/nfkb-targets.gmt +0 -0
  99. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/curated/nfkb-upregulated.gmt +0 -0
  100. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/curated/nfkb.gmt +0 -0
  101. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/hallmark.gmt +0 -0
  102. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/kegg.gmt +0 -0
  103. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/m2.gmt +0 -0
  104. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/markers.gmt +0 -0
  105. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/mf.gmt +0 -0
  106. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/microrna.gmt +0 -0
  107. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/mpt.gmt +0 -0
  108. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/positional.gmt +0 -0
  109. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/reactome.gmt +0 -0
  110. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/transcript-factors.gmt +0 -0
  111. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genesets/wikipathway.gmt +0 -0
  112. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/genome.tsv.gz +0 -0
  113. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/lr/consensus +0 -0
  114. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/taxa +0 -0
  115. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/presets.py +0 -0
  116. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/private.py +0 -0
  117. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/ranges.py +0 -0
  118. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/signature.py +0 -0
  119. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/tf.py +0 -0
  120. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/descriptive/__init__.py +0 -0
  121. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/descriptive/aggregate.py +0 -0
  122. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/descriptive/aucell.py +0 -0
  123. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/descriptive/de.py +0 -0
  124. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/descriptive/gse.py +0 -0
  125. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/descriptive/kde.py +0 -0
  126. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/descriptive/recovery.py +0 -0
  127. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/descriptive/summary.py +0 -0
  128. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/descriptive/tcr.py +0 -0
  129. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/dynamics/__init__.py +0 -0
  130. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/dynamics/generank.py +0 -0
  131. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/dynamics/linreg.py +0 -0
  132. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/dynamics/moments.py +0 -0
  133. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/dynamics/optimization.py +0 -0
  134. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/dynamics/parallel.py +0 -0
  135. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/dynamics/preprocess.py +0 -0
  136. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/dynamics/pseudotime.py +0 -0
  137. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/dynamics/transition.py +0 -0
  138. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/dynamics/utils.py +0 -0
  139. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/dynamics/velocity.py +0 -0
  140. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/grn/__init__.py +0 -0
  141. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/grn/infergrn.py +0 -0
  142. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/grn/modules.py +0 -0
  143. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/grn/prune.py +0 -0
  144. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/grn/regressors.py +0 -0
  145. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/grn/utils.py +0 -0
  146. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/__init__.py +0 -0
  147. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/aggregate.py +0 -0
  148. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/method.py +0 -0
  149. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/methods/__init__.py +0 -0
  150. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/methods/cellchat.py +0 -0
  151. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/methods/cellphonedb.py +0 -0
  152. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/methods/connectome.py +0 -0
  153. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/methods/geomean.py +0 -0
  154. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/methods/logfc.py +0 -0
  155. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/methods/natmi.py +0 -0
  156. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/methods/rank_aggregate.py +0 -0
  157. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/methods/scseqcomm.py +0 -0
  158. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/methods/singlecellsignalr.py +0 -0
  159. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/pipeline.py +0 -0
  160. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/preprocess.py +0 -0
  161. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/resources.py +0 -0
  162. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/utils.py +0 -0
  163. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/plotting/__init__.py +0 -0
  164. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/plotting/cnmf.py +0 -0
  165. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/plotting/cnv.py +0 -0
  166. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/plotting/de.py +0 -0
  167. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/plotting/expression.py +0 -0
  168. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/plotting/gse.py +0 -0
  169. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/plotting/lr.py +0 -0
  170. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/plotting/palettes.py +0 -0
  171. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/plotting/sankey.py +0 -0
  172. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/plotting/summary.py +0 -0
  173. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/plotting/utils.py +0 -0
  174. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/plotting/velocity.py +0 -0
  175. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/preprocessing/__init__.py +0 -0
  176. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/preprocessing/doublets/__init__.py +0 -0
  177. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/preprocessing/doublets/composite.py +0 -0
  178. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/preprocessing/doublets/scrublet.py +0 -0
  179. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/preprocessing/filter.py +0 -0
  180. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/preprocessing/integrate.py +0 -0
  181. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/preprocessing/linear.py +0 -0
  182. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/preprocessing/normal.py +0 -0
  183. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/preprocessing/plot.py +0 -0
  184. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/preprocessing/qc.py +0 -0
  185. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/preprocessing/sctransform/__init__.py +0 -0
  186. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/preprocessing/sctransform/estimate.py +0 -0
  187. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/preprocessing/sctransform/ksmooth.py +0 -0
  188. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/preprocessing/sctransform/residual.py +0 -0
  189. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/preprocessing/sctransform/transform.py +0 -0
  190. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/preprocessing/sparse.py +0 -0
  191. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/preprocessing/uniform.py +0 -0
  192. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/reader/__init__.py +0 -0
  193. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/reader/experiment.py +0 -0
  194. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/reader/matcher.py +0 -0
  195. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/reader/metadata.py +0 -0
  196. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/reader/peaks.py +0 -0
  197. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/reduction/__init__.py +0 -0
  198. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/reduction/forceatlas.py +0 -0
  199. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/reduction/mde.py +0 -0
  200. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/reduction/nn.py +0 -0
  201. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/reduction/outliers.py +0 -0
  202. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/reduction/pca.py +0 -0
  203. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/reduction/plot.py +0 -0
  204. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/reduction/tsne.py +0 -0
  205. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/reduction/umap.py +0 -0
  206. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/trajectory/pcurve.py +0 -0
  207. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/transfer/__init__.py +0 -0
  208. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/transfer/atlas.py +0 -0
  209. {exprmat-0.1.23 → exprmat-0.1.24}/exprmat/utils.py +0 -0
  210. {exprmat-0.1.23 → exprmat-0.1.24}/license +0 -0
  211. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/Cargo.toml +0 -0
  212. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/license +0 -0
  213. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/readme +0 -0
  214. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/src/call_peaks.rs +0 -0
  215. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/src/embedding.rs +0 -0
  216. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/src/export.rs +0 -0
  217. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/src/knn.rs +0 -0
  218. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/src/lib.rs +0 -0
  219. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/src/motif.rs +0 -0
  220. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/src/network.rs +0 -0
  221. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/src/preprocessing.rs +0 -0
  222. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/src/utils/anndata.rs +0 -0
  223. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/src/utils.rs +0 -0
  224. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/Cargo.toml +0 -0
  225. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/embedding.rs +0 -0
  226. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/export.rs +0 -0
  227. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/feature_count/counter.rs +0 -0
  228. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/feature_count/data_iter.rs +0 -0
  229. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/feature_count/matrix.rs +0 -0
  230. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/feature_count/mod.rs +0 -0
  231. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/genome.rs +0 -0
  232. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/lib.rs +0 -0
  233. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/motif.rs +0 -0
  234. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/network.rs +0 -0
  235. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/preprocessing/bam/flagstat.rs +0 -0
  236. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/preprocessing/bam/header.rs +0 -0
  237. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/preprocessing/bam/mark_duplicates.rs +0 -0
  238. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/preprocessing/bam.rs +0 -0
  239. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/preprocessing/import.rs +0 -0
  240. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/preprocessing/mod.rs +0 -0
  241. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/preprocessing/qc.rs +0 -0
  242. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/utils/knn.rs +0 -0
  243. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/utils/mod.rs +0 -0
  244. {exprmat-0.1.23 → exprmat-0.1.24}/snapatac2-core/src/utils/similarity.rs +0 -0
{exprmat-0.1.23 → exprmat-0.1.24}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: exprmat
3
- Version: 0.1.23
3
+ Version: 0.1.24
4
4
  Classifier: Programming Language :: Rust
5
5
  Classifier: Programming Language :: Python :: Implementation :: CPython
6
6
  Classifier: Programming Language :: Python :: Implementation :: PyPy
@@ -74,9 +74,9 @@ clustering, visualizations, and downstream analyses with a common interface.
74
74
 
75
75
  You may refer to these places:
76
76
 
77
- * ![Source code repository](https://github.com/yang-z-03/exprmat)
78
- * ![Releases in PyPI](https://pypi.org/project/exprmat)
79
- * ![Documentation](https://exprmat.readthedocs.io/en/latest)
77
+ * [Source code repository](https://github.com/yang-z-03/exprmat)
78
+ * [Releases in PyPI](https://pypi.org/project/exprmat)
79
+ * [Documentation](https://exprmat.readthedocs.io/en/latest)
80
80
  * Due to the extensive size (and the size limit imposed by PyPI repositories), we
81
81
  do not contain the genomic references and databases for transcriptional factors
82
82
  and motifs, thus functions related to accessible genomic regions are not available
{exprmat-0.1.23 → exprmat-0.1.24}/pyproject.toml RENAMED
@@ -19,7 +19,7 @@ description = "exprmat: Routines for expression matrices"
19
19
  readme = "readme.md"
20
20
  license = {file = "license"}
21
21
  requires-python = ">=3.9, <3.13"
22
- version = "0.1.23"
22
+ version = "0.1.24"
23
23
  authors = [
24
24
  {name = "Zheng Yang", email = "xornent@outlook.com"}
25
25
  ]
{exprmat-0.1.23 → exprmat-0.1.24}/readme.md RENAMED
@@ -12,9 +12,9 @@ clustering, visualizations, and downstream analyses with a common interface.
12
12
 
13
13
  You may refer to these places:
14
14
 
15
- * ![Source code repository](https://github.com/yang-z-03/exprmat)
16
- * ![Releases in PyPI](https://pypi.org/project/exprmat)
17
- * ![Documentation](https://exprmat.readthedocs.io/en/latest)
15
+ * [Source code repository](https://github.com/yang-z-03/exprmat)
16
+ * [Releases in PyPI](https://pypi.org/project/exprmat)
17
+ * [Documentation](https://exprmat.readthedocs.io/en/latest)
18
18
  * Due to the extensive size (and the size limit imposed by PyPI repositories), we
19
19
  do not contain the genomic references and databases for transcriptional factors
20
20
  and motifs, thus functions related to accessible genomic regions are not available
{exprmat-0.1.23 → exprmat-0.1.24}/Cargo.lock RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/Cargo.toml RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/exprmat/__init__.py RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/exprmat/ansi.py RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/delim.py RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/gff.py RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/hsa/taxa RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/io.py RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/lr.py RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/mmu/taxa RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/exprmat/data/tf.py RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/exprmat/grn/prune.py RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/exprmat/grn/utils.py RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/method.py RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/exprmat/lr/utils.py RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/exprmat/utils.py RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/license RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/Cargo.toml RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/license RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/readme RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/src/knn.rs RENAMED
File without changes
{exprmat-0.1.23 → exprmat-0.1.24}/snapatac2/src/lib.rs RENAMED
File without changes