exprmat 0.1.16__tar.gz → 0.1.18__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {exprmat-0.1.16 → exprmat-0.1.18}/PKG-INFO +1 -1
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/__init__.py +1 -1
- exprmat-0.1.18/exprmat/data/hsa/genesets/kegg.gmt +367 -0
- exprmat-0.1.18/exprmat/data/mmu/genesets/kegg.gmt +363 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/descriptive/gse.py +16 -9
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/reader/experiment.py +2 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat.egg-info/PKG-INFO +1 -1
- {exprmat-0.1.16 → exprmat-0.1.18}/setup.py +1 -1
- exprmat-0.1.16/exprmat/data/hsa/genesets/kegg.gmt +0 -320
- exprmat-0.1.16/exprmat/data/mmu/genesets/kegg.gmt +0 -303
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/ansi.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/clustering/__init__.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/clustering/leiden.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/clustering/rogue.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/clustering/spectral.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/clustering/utils.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/cnv/__init__.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/cnv/cnvscore.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/cnv/infercnv.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/configuration.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/__init__.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/delim.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/finders.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/geneset.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/gff.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/entrez.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/all.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/bp.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/cancer-modules.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/cancer-neighborhoods.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/cancer.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/cc.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/chemical-perturb.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/hallmark.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/human-phenotype-ontology.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/immune-perturb.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/mf.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/microrna.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/oncogenic.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/pathways.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/positional.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/single-cell.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/transcript-factors.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genesets/vaccine.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/genome.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/lr/baccin2019 +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/lr/cellcall +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/lr/cellchatdb +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/lr/cellinker +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/lr/cellphonedb +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/lr/celltalkdb +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/lr/connectomedb2020 +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/lr/consensus +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/lr/embrace +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/lr/guide2pharma +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/lr/hpmr +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/lr/icellnet +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/lr/italk +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/lr/kirouac2010 +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/lr/lrdb +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/lr/ramilowski2015 +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/mapping-ensembl.pkl +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/mapping-name.pkl +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/aca.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/bta.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/cel.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/clu.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/dme.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/dre.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/eca.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/fca.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/gga.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/mdo.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/mmu.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/mmul.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/oan.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/ptr.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/rno.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/sce.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/spo.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/ssc.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/orthologs/xla.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/hsa/taxa +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/lr.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/entrez.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/genesets/all.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/genesets/azimuth.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/genesets/biocarta.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/genesets/bp.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/genesets/cc.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/genesets/chemical-perturb.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/genesets/hallmark.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/genesets/m2.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/genesets/markers.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/genesets/mf.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/genesets/microrna.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/genesets/mpt.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/genesets/positional.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/genesets/reactome.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/genesets/transcript-factors.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/genesets/wikipathway.gmt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/genome.tsv.gz +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/lr/consensus +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/mapping-ensembl.pkl +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/mapping-name.pkl +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/mmu/taxa +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/presets.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/private.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/data/ranges.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/descriptive/__init__.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/descriptive/aggregate.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/descriptive/de.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/descriptive/kde.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/descriptive/summary.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/descriptive/tcr.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/dynamics/__init__.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/dynamics/generank.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/dynamics/linreg.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/dynamics/moments.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/dynamics/optimization.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/dynamics/parallel.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/dynamics/preprocess.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/dynamics/pseudotime.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/dynamics/transition.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/dynamics/utils.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/dynamics/velocity.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/lr/__init__.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/lr/aggregate.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/lr/method.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/lr/methods/__init__.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/lr/methods/cellchat.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/lr/methods/cellphonedb.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/lr/methods/connectome.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/lr/methods/geomean.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/lr/methods/logfc.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/lr/methods/natmi.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/lr/methods/rank_aggregate.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/lr/methods/scseqcomm.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/lr/methods/singlecellsignalr.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/lr/pipeline.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/lr/preprocess.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/lr/resources.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/lr/utils.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/plotting/__init__.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/plotting/cnv.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/plotting/de.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/plotting/expression.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/plotting/gse.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/plotting/lr.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/plotting/palettes.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/plotting/sankey.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/plotting/summary.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/plotting/utils.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/plotting/velocity.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/preprocessing/__init__.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/preprocessing/doublets/__init__.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/preprocessing/doublets/composite.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/preprocessing/doublets/scrublet.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/preprocessing/filter.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/preprocessing/integrate.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/preprocessing/linear.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/preprocessing/normal.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/preprocessing/plot.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/preprocessing/qc.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/preprocessing/sctransform/__init__.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/preprocessing/sctransform/estimate.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/preprocessing/sctransform/ksmooth.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/preprocessing/sctransform/residual.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/preprocessing/sctransform/transform.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/preprocessing/sparse.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/preprocessing/uniform.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/reader/__init__.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/reader/matcher.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/reader/metadata.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/reduction/__init__.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/reduction/forceatlas.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/reduction/mde.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/reduction/nn.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/reduction/outliers.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/reduction/pca.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/reduction/plot.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/reduction/tsne.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/reduction/umap.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/transfer/__init__.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/transfer/atlas.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat/utils.py +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat.egg-info/SOURCES.txt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat.egg-info/dependency_links.txt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat.egg-info/not-zip-safe +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat.egg-info/requires.txt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/exprmat.egg-info/top_level.txt +0 -0
- {exprmat-0.1.16 → exprmat-0.1.18}/setup.cfg +0 -0