expdeploy 0.1.0__tar.gz

expdeploy-0.1.0/.dockerignore

@@ -0,0 +1,20 @@
+.git/
+.venv/
+.uv/
+.mypy_cache/
+.ruff_cache/
+.pytest_cache/
+**/__pycache__/
+**/*.pyc
+data/
+state/
+tests/
+docs/
+examples/
+.github/
+**/*.md
+!README.md
+.gitignore
+.pre-commit-config.yaml
+playwright-report/
+test-results/

expdeploy-0.1.0/.github/workflows/ci.yml

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+name: CI
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+jobs:
+  test:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest]
+        python: ["3.11", "3.12"]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v3
+        with:
+          version: "0.5.x"
+
+      - name: Set up Python ${{ matrix.python }}
+        run: uv python install ${{ matrix.python }}
+
+      - name: Install dependencies
+        run: uv sync --extra dev
+
+      - name: Install Playwright browsers
+        run: uv run playwright install --with-deps chromium
+
+      - name: Lint (ruff)
+        run: |
+          uv run ruff check .
+          uv run ruff format --check .
+
+      - name: Type check (mypy)
+        run: uv run mypy src/expdeploy
+
+      - name: Unit + integration tests
+        run: uv run pytest tests/unit tests/integration -v
+
+      - name: End-to-end (Playwright)
+        run: uv run pytest tests/e2e -v -m e2e

expdeploy-0.1.0/.github/workflows/container.yml

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+name: Container
+
+on:
+  push:
+    tags: ['v*']
+  workflow_dispatch:
+
+permissions:
+  contents: read
+  packages: write
+
+jobs:
+  publish:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: docker/setup-qemu-action@v3
+      - uses: docker/setup-buildx-action@v3
+      - uses: docker/login-action@v3
+        with:
+          registry: ghcr.io
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+      - id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ghcr.io/${{ github.repository_owner }}/expdeploy
+          tags: |
+            type=ref,event=tag
+            type=semver,pattern={{version}}
+            type=semver,pattern={{major}}.{{minor}}
+            type=raw,value=latest
+      - uses: docker/build-push-action@v6
+        with:
+          context: .
+          platforms: linux/amd64,linux/arm64
+          push: true
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: ${{ steps.meta.outputs.labels }}
+          cache-from: type=gha
+          cache-to: type=gha,mode=max

expdeploy-0.1.0/.github/workflows/docs.yml

@@ -0,0 +1,39 @@
+name: Docs
+
+on:
+  push:
+    branches: [main]
+  workflow_dispatch:
+
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+concurrency:
+  group: "pages"
+  cancel-in-progress: false
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: astral-sh/setup-uv@v3
+        with:
+          version: "0.5.x"
+      - run: uv python install 3.12
+      - run: uv sync --extra docs
+      - run: uv run mkdocs build --strict
+      - uses: actions/upload-pages-artifact@v3
+        with:
+          path: site
+  deploy:
+    needs: build
+    runs-on: ubuntu-latest
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    steps:
+      - id: deployment
+        uses: actions/deploy-pages@v4

expdeploy-0.1.0/.github/workflows/release.yml

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+name: Release
+
+on:
+  push:
+    tags: ['v*']
+  workflow_dispatch:
+
+permissions:
+  contents: read
+  id-token: write
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: astral-sh/setup-uv@v3
+        with:
+          version: "0.5.x"
+      - run: uv python install 3.12
+      - run: uv sync --extra dev
+      - run: uv build
+      - uses: actions/upload-artifact@v4
+        with:
+          name: dist
+          path: dist/
+  publish:
+    needs: build
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/expdeploy
+    steps:
+      - uses: actions/download-artifact@v4
+        with:
+          name: dist
+          path: dist/
+      - uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          packages-dir: dist/

expdeploy-0.1.0/.gitignore

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+# Python
+__pycache__/
+*.py[cod]
+*$py.class
+*.egg-info/
+.eggs/
+build/
+dist/
+.venv/
+.python-version
+
+# uv
+.uv/
+
+# pytest / coverage
+.pytest_cache/
+.coverage
+htmlcov/
+.tox/
+
+# mypy / ruff
+.mypy_cache/
+.ruff_cache/
+
+# Playwright
+test-results/
+playwright-report/
+playwright/.cache/
+
+# data dirs from local runs
+data/
+state/
+
+# editor / OS
+.DS_Store
+.idea/
+.vscode/
+
+# expdeploy-specific
+sessions_*/
+
+# mkdocs build output
+site/

expdeploy-0.1.0/.pre-commit-config.yaml

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+repos:
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.3.4
+    hooks:
+      - id: ruff
+        args: [--fix]
+      - id: ruff-format
+
+  - repo: https://github.com/pre-commit/mirrors-mypy
+    rev: v1.9.0
+    hooks:
+      - id: mypy
+        files: ^src/
+        additional_dependencies:
+          - fastapi>=0.110
+          - pydantic>=2.6
+          - typer>=0.12
+          - jinja2>=3.1
+          - filelock>=3.13
+          - types-toml

expdeploy-0.1.0/CONTRIBUTING.md

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+# Contributing to expdeploy
+
+Thanks for your interest in contributing.
+
+## Development setup
+
+```bash
+git clone https://github.com/lobennett/expdeploy.git
+cd expdeploy
+uv sync --extra dev
+uv run pre-commit install
+uv run playwright install --with-deps chromium
+```
+
+## Branches
+
+- `main` is the integration branch; releases are tagged from `main` (`v0.X.Y`).
+- Feature work lands on `feat/<short-name>` branches and merges via PR.
+- Each PR runs the full CI matrix (Ubuntu+macOS × Python 3.11+3.12).
+
+## Commit messages
+
+Short imperative subject lines, ≤72 characters. Examples:
+- `Add SupabaseAdapter.save (Postgres upsert + storage bucket upload)`
+- `Drop dead tomli conditional dep (we require Python 3.11+)`
+
+## Tests
+
+- TDD is the default workflow. Write a failing test before the implementation.
+- Three tiers: `tests/unit/`, `tests/integration/`, `tests/e2e/` (Playwright).
+- New storage adapters must satisfy the parametrized adapter contract suite (TBD).
+- E2E tests are marked `@pytest.mark.e2e`. Run with `uv run pytest -m e2e`.
+
+## Lint + format + types
+
+```bash
+uv run ruff check .
+uv run ruff format --check .
+uv run mypy src/expdeploy
+```
+
+`pre-commit` runs all three on every commit. If a hook reformats your code, re-stage and commit again.
+
+## jsPsych asset re-vendoring
+
+If you bump the jsPsych version in `scripts/fetch_jspsych_assets.py`, re-run the script:
+
+```bash
+uv run python scripts/fetch_jspsych_assets.py
+```
+
+Commit the regenerated `src/expdeploy/jspsych_assets/<version>/` directory.
+
+## Releasing
+
+1. Bump `version` in `pyproject.toml` and `__version__` in `src/expdeploy/__init__.py`.
+2. Open a PR titled `Release v0.X.Y`.
+3. After merge, tag `v0.X.Y`. CI publishes the multi-arch container to GHCR and the wheel to PyPI.

expdeploy-0.1.0/Dockerfile

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+# syntax=docker/dockerfile:1
+FROM python:3.12-slim AS runtime
+
+# Install uv from its official image
+COPY --from=ghcr.io/astral-sh/uv:0.5 /uv /usr/local/bin/uv
+
+WORKDIR /opt/expdeploy
+
+# Install Python deps first (cache layer)
+COPY pyproject.toml uv.lock README.md ./
+COPY src/ ./src/
+
+RUN uv sync --frozen --no-dev --extra supabase \
+    && rm -rf /root/.cache/uv
+
+# Non-root for HPC / Apptainer compatibility
+RUN useradd -m -u 1000 expdeploy
+USER expdeploy
+
+ENV PYTHONUNBUFFERED=1 \
+    EXPDEPLOY_DATA_DIR=/data \
+    EXPDEPLOY_HOST=0.0.0.0
+
+EXPOSE 8080
+VOLUME ["/data", "/experiments"]
+
+ENTRYPOINT ["uv", "run", "--no-sync", "expdeploy"]
+CMD ["--help"]
+
+LABEL org.opencontainers.image.title="expdeploy" \
+      org.opencontainers.image.source="https://github.com/lobennett/expdeploy" \
+      org.opencontainers.image.licenses="MIT"

expdeploy-0.1.0/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2026 Logan Bennett
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

expdeploy-0.1.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: expdeploy
+Version: 0.1.0
+Summary: Modern Python deploy tool for jsPsych v8 experiments
+Author-email: Logan Bennett <logben@stanford.edu>
+License: MIT
+License-File: LICENSE
+Keywords: bids,cognitive-science,experiment,fmri,jspsych,psychology
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Topic :: Scientific/Engineering
+Requires-Python: >=3.11
+Requires-Dist: fastapi>=0.110
+Requires-Dist: filelock>=3.13
+Requires-Dist: jinja2>=3.1
+Requires-Dist: pydantic>=2.6
+Requires-Dist: python-ulid>=2.7
+Requires-Dist: rich>=13.7
+Requires-Dist: typer>=0.12
+Requires-Dist: uvicorn[standard]>=0.27
+Provides-Extra: dev
+Requires-Dist: httpx>=0.27; extra == 'dev'
+Requires-Dist: hypothesis>=6.98; extra == 'dev'
+Requires-Dist: mypy>=1.9; extra == 'dev'
+Requires-Dist: playwright>=1.42; extra == 'dev'
+Requires-Dist: pre-commit>=3.6; extra == 'dev'
+Requires-Dist: pytest-asyncio>=0.23; extra == 'dev'
+Requires-Dist: pytest-cov>=4.1; extra == 'dev'
+Requires-Dist: pytest>=8.0; extra == 'dev'
+Requires-Dist: ruff>=0.3; extra == 'dev'
+Provides-Extra: docs
+Requires-Dist: mkdocs-material>=9.5; extra == 'docs'
+Requires-Dist: mkdocs-typer>=0.0.3; extra == 'docs'
+Requires-Dist: mkdocs>=1.6; extra == 'docs'
+Provides-Extra: supabase
+Requires-Dist: supabase>=2.4; extra == 'supabase'
+Description-Content-Type: text/markdown
+
+# expdeploy
+
+A modern Python deploy tool for [jsPsych v8](https://www.jspsych.org/) experiments.
+Pays homage to [expfactory](https://github.com/expfactory) and expands its scope:
+canonical jsPsych ESM authoring, BIDS-compliant data layout, batteries with
+counterbalancing, and reproducibility via OCI containers.
+
+**Status:** v0.1-alpha. Under active development; not yet stable.
+
+## Quick start
+
+```bash
+uv tool install expdeploy
+expdeploy run ./examples/hello_world --subject 01 --port 8080
+# opens http://localhost:8080
+```
+
+## Documentation
+
+See `docs/superpowers/specs/2026-05-14-expdeploy-design.md` for the v0.1 design spec.
+
+## License
+
+MIT — see [LICENSE](LICENSE).

expdeploy-0.1.0/README.md

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+# expdeploy
+
+A modern Python deploy tool for [jsPsych v8](https://www.jspsych.org/) experiments.
+Pays homage to [expfactory](https://github.com/expfactory) and expands its scope:
+canonical jsPsych ESM authoring, BIDS-compliant data layout, batteries with
+counterbalancing, and reproducibility via OCI containers.
+
+**Status:** v0.1-alpha. Under active development; not yet stable.
+
+## Quick start
+
+```bash
+uv tool install expdeploy
+expdeploy run ./examples/hello_world --subject 01 --port 8080
+# opens http://localhost:8080
+```
+
+## Documentation
+
+See `docs/superpowers/specs/2026-05-14-expdeploy-design.md` for the v0.1 design spec.
+
+## License
+
+MIT — see [LICENSE](LICENSE).

expdeploy-0.1.0/docs/cli-reference.md

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+# CLI reference
+
+!!! note "Auto-generation not available"
+    `mkdocs-typer` is installed but did not expand the directive with the current Typer version.
+    Run `expdeploy --help` (or `expdeploy <cmd> --help`) to see full command documentation.
+
+## Global options
+
+```
+expdeploy [OPTIONS] COMMAND [ARGS]...
+```
+
+## Commands
+
+### `run`
+
+Serve a single experiment or battery.
+
+```bash
+expdeploy run PATH [OPTIONS]
+  --subject TEXT          Subject ID (required)
+  --session TEXT          Session number
+  --run TEXT              Run number
+  --port INTEGER          Port to listen on [default: 8080]
+  --data-dir PATH         Data output directory [default: ./data]
+  --no-browser            Don't open browser automatically
+  --remote TEXT           Remote adapter names to mirror writes to (e.g. supabase)
+  --vars TEXT             JSON string of extra variables injected into window.expdeploy.vars
+```
+
+### `validate`
+
+Validate a manifest.toml or battery.toml without running.
+
+```bash
+expdeploy validate PATH
+```
+
+### `status`
+
+List runs recorded in the local catalog.
+
+```bash
+expdeploy status [OPTIONS]
+  --data-dir PATH         Data directory [default: ./data]
+```
+
+### `sync`
+
+Replay failed remote-storage writes against the configured adapter.
+
+```bash
+expdeploy sync [OPTIONS]
+  --adapter TEXT          Remote adapter name [default: supabase]
+  --dry-run               List pending writes without executing
+  --data-dir PATH         Data directory [default: ./data]
+```
+
+### `build`
+
+Build a study-specific OCI image with experiments baked in.
+
+```bash
+expdeploy build TARGET [OPTIONS]
+  --tag TEXT              OCI image tag (required)
+  --base-tag TEXT         Base image tag to FROM [default: ghcr.io/lobennett/expdeploy:latest]
+  --engine TEXT           docker | podman [default: docker]
+  --push / --no-push      Push after build [default: no-push]
+  --output PATH           Where to write study.Dockerfile
+```
+
+### `supabase migrate`
+
+Apply idempotent DDL to the configured Supabase Postgres.
+
+```bash
+expdeploy supabase migrate
+```
+
+### `supabase test-connection`
+
+Verify the configured Supabase credentials and bucket access.
+
+```bash
+expdeploy supabase test-connection
+```
+
+### `supabase drop`
+
+DROP the expdeploy schema. Test environments only.
+
+```bash
+expdeploy supabase drop --confirm
+```

expdeploy-0.1.0/docs/container.md

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+# Container
+
+The OCI image lives at `ghcr.io/lobennett/expdeploy:<version>` (multi-arch: linux/amd64 + linux/arm64).
+
+## Day-to-day dev (bind-mount)
+
+```bash
+podman run --rm -p 8080:8080 \
+  -v $PWD/experiments:/experiments:ro \
+  -v $PWD/data:/data \
+  ghcr.io/lobennett/expdeploy:latest \
+  run /experiments/flanker --subject 01 --data-dir /data
+```
+
+## Study image (reproducible scientific artifact)
+
+`expdeploy build` produces an image with experiments baked in. This is the image you cite in your paper.
+
+```bash
+expdeploy build ./battery.toml \
+  --tag ghcr.io/your-lab/study-2026:2026-05-17 \
+  --engine podman \
+  --push
+```
+
+The generated `study.Dockerfile` is written next to the battery file and is gitable for transparency. The image carries OCI labels:
+
+- `org.expdeploy.manifest_hash` — content hash of every experiment file + battery.toml
+- `org.expdeploy.deploy_version` — `expdeploy` version that built the image
+
+## Apptainer / Singularity
+
+```bash
+apptainer pull docker://ghcr.io/lobennett/expdeploy:latest
+apptainer run --bind ./experiments:/experiments --bind ./data:/data \
+  expdeploy.sif run /experiments/battery.toml --subject 01
+```

expdeploy-0.1.0/docs/getting-started.md

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+# Getting started
+
+## Install
+
+The package will be available on PyPI after the v0.1.0 release:
+
+```bash
+uv tool install expdeploy
+```
+
+For development:
+
+```bash
+git clone https://github.com/lobennett/expdeploy.git
+cd expdeploy
+uv sync --extra dev
+```
+
+## Run the hello-world
+
+```bash
+expdeploy run ./examples/hello_world --subject 01 --port 8080
+```
+
+This opens `http://localhost:8080` in your browser. Press any key on the stimulus and you'll see a `Saved.` confirmation. The raw JSON lands at `./data/raw/sub-01/sub-01_task-hello_beh.json`; an entry appears in `./data/catalog.sqlite`.
+
+## Inspect runs
+
+```bash
+expdeploy status --data-dir ./data
+```
+
+## Run a battery
+
+```bash
+expdeploy run ./examples/mini_battery/battery.toml --subject 0
+```
+
+Or inline:
+
+```bash
+expdeploy run \
+  --exps ./flanker,./stroop,./nback \
+  --counterbalance latin_square \
+  --subject 01
+```

expdeploy-0.1.0/docs/index.md

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+# expdeploy
+
+A modern Python deploy tool for [jsPsych v8](https://www.jspsych.org/) experiments.
+
+**Status: v0.1.0** — lab-ready.
+
+## What it does
+
+- Serves jsPsych v8 experiments locally with **zero Node.js dependency** for experimenters.
+- Authoring in canonical ESM (`import { initJsPsych } from 'jspsych'`) with local imports working out of the box.
+- **BIDS-compatible** filesystem layout for fMRI and behavioral data.
+- **Batteries** of experiments with four counterbalance schemes (fixed, Latin square, seeded random, user-supplied).
+- **Local-first** storage with optional Supabase mirror, replayable via `expdeploy sync`.
+- **Reproducibility**: layered OCI images via `expdeploy build` — a study image freezes deploy version, jsPsych version, every experiment file, and every Python dep.
+
+## Quick install
+
+```bash
+uv tool install expdeploy
+expdeploy run ./examples/hello_world --subject 01
+```
+
+→ [Getting started](getting-started.md)