evidencematrix 0.1.0__tar.gz

evidencematrix-0.1.0/LICENSE

@@ -0,0 +1,201 @@
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evidencematrix-0.1.0/MANIFEST.in

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+include LICENSE README.md
+recursive-include examples *.yaml *.md

evidencematrix-0.1.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: evidencematrix
+Version: 0.1.0
+Summary: A deterministic source-coverage audit tool for multi-source datasets
+Author: KageRyo
+License-Expression: Apache-2.0
+Project-URL: Homepage, https://github.com/KageRyo/EvidenceMatrix
+Project-URL: Repository, https://github.com/KageRyo/EvidenceMatrix
+Project-URL: Issues, https://github.com/KageRyo/EvidenceMatrix/issues
+Classifier: Development Status :: 3 - Alpha
+Classifier: Environment :: Console
+Classifier: Intended Audience :: Developers
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Topic :: Database
+Classifier: Topic :: Scientific/Engineering :: Information Analysis
+Requires-Python: >=3.11
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: PyYAML<7,>=6.0
+Dynamic: license-file
+
+# EvidenceMatrix
+
+[![CI](https://github.com/KageRyo/EvidenceMatrix/actions/workflows/ci.yml/badge.svg?branch=main)](https://github.com/KageRyo/EvidenceMatrix/actions/workflows/ci.yml)
+[![PyPI](https://img.shields.io/pypi/v/evidencematrix)](https://pypi.org/project/evidencematrix/)
+[![Latest release](https://img.shields.io/github/v/release/KageRyo/EvidenceMatrix?display_name=tag&sort=semver)](https://github.com/KageRyo/EvidenceMatrix/releases)
+[![Python 3.11+](https://img.shields.io/badge/python-3.11%2B-3776AB?logo=python&logoColor=white)](https://www.python.org/)
+[![License: Apache-2.0](https://img.shields.io/badge/license-Apache--2.0-blue.svg)](LICENSE)
+
+EvidenceMatrix builds deterministic coverage matrices for a declared set of entities and expected sources. It shows which relationships are supported, have known gaps, are unavailable, remain unknown, or do not apply.
+
+EvidenceMatrix was extracted from source-coverage auditing patterns developed in a real-world multi-source data pipeline. It is a standalone tool and does not require that project or its data.
+
+## What it does
+
+- Validates a small YAML or JSON manifest of entities, sources, and coverage declarations.
+- Expands the declared entities and sources into a complete, sorted entity-by-source matrix.
+- Reports status counts and unresolved relationships without assigning a subjective quality score.
+- Writes stable CSV, JSON, and Markdown reports without adding timestamps.
+- Runs locally and offline after installation.
+
+## What it does not do
+
+EvidenceMatrix does not download or transform data, validate arbitrary dataset schemas, verify file integrity, build lineage graphs, align spatial data, manage workflows, or evaluate machine-learning models. Use [LineageGuard](https://github.com/KageRyo/LineageGuard) for artifact origin and lineage, [ReleaseGuard](https://github.com/KageRyo/ReleaseGuard) for dataset release structure and integrity, and [GridForge](https://github.com/KageRyo/GridForge) for spatial alignment.
+
+## Installation
+
+After a release is published, install it with `uv tool install evidencematrix` or `python -m pip install evidencematrix`. To run from a checkout, use Python 3.11 or newer and `uv sync --all-groups`, then prefix commands with `uv run`.
+
+The runtime has one dependency, PyYAML, for safe YAML parsing. JSON input and all audit calculations work offline; the CLI makes no network requests.
+
+## Quick start
+
+The bundled [`examples/basic/coverage.yaml`](examples/basic/coverage.yaml) demonstrates supported, mapping-gap, metadata-gap, unavailable, not-in-release, not-applicable, and unknown relationships.
+
+```bash
+evidencematrix validate examples/basic
+evidencematrix build examples/basic --output ./out
+evidencematrix audit examples/basic
+evidencematrix summary examples/basic
+evidencematrix summary examples/basic --format json
+```
+
+`audit` returns exit code 1 for unresolved relationships in this example. The example contains gaps intentionally; `validate`, `build`, and `summary` succeed with exit code 0.
+
+`build` writes `coverage_matrix.csv`, `coverage_report.json`, `gap_report.json`, `summary.json`, and `coverage_report.md`. The JSON reports use sorted keys and stable indentation; CSV rows sort by entity ID and source ID. Rebuilding identical input with the same tool version produces byte-identical files.
+
+## Input model
+
+A manifest has `version`, `entities`, `sources`, and `coverage` fields. IDs are unique strings. Each source declares its availability. Coverage entries are optional and identify one entity, one source, and one status; `reason` is an optional explanatory string for non-supported states.
+
+```yaml
+version: 1
+
+entities:
+  - id: event-001
+  - id: event-002
+
+sources:
+  - id: cwa
+    availability: available
+  - id: emic
+    availability: unavailable
+
+coverage:
+  - entity: event-001
+    source: cwa
+    status: supported
+  - entity: event-002
+    source: cwa
+    status: mapping_gap
+    reason: no_verified_mapping
+```
+
+The input is deliberately strict: unknown fields, duplicate IDs or relationships, invalid references, duplicate YAML or JSON keys, and contradictory availability declarations fail validation. `PATH` may point to a `.yaml`, `.yml`, or `.json` file, or to a directory containing exactly one such manifest. No external file references are part of schema version 1.
+
+### Availability and coverage status
+
+Source availability and entity-source coverage describe related but separate facts. Availability accepts `available`, `unavailable`, `not_in_release`, and `unknown`. Coverage accepts:
+
+| Status | Meaning |
+| --- | --- |
+| `supported` | The manifest declares evidence for this entity-source relationship. |
+| `metadata_gap` | Required descriptive metadata is missing or unresolved. |
+| `mapping_gap` | The source-to-entity relationship is not established. |
+| `source_unavailable` | The source payload is declared unavailable. |
+| `source_not_in_release` | The expected source is not included in the release being described. |
+| `not_applicable` | The relationship is explicitly outside scope. |
+| `unknown` | The relationship has not been assessed. |
+
+Each entity is paired with every listed source. An explicit coverage row sets that pair's status. If no row exists, a source marked `unavailable` or `not_in_release` determines the corresponding relationship status; otherwise the relationship remains `unknown`. In particular, a missing relationship is never inferred to be a mapping gap. Explicit `not_applicable` relationships stay visible in the matrix and summary, but are excluded from unresolved audit findings.
+
+`supported` is a manifest declaration. EvidenceMatrix checks that declaration's structure and consistency; it does not inspect or authenticate external evidence.
+
+## Commands and exit codes
+
+```text
+evidencematrix validate PATH
+evidencematrix build PATH [--output DIR]
+evidencematrix audit PATH [--format text|json]
+evidencematrix summary PATH [--format text|json]
+```
+
+`validate` checks input without modifying it. `build` creates deterministic reports. `audit` lists unresolved rows and returns 1 when it finds any; `not_applicable` rows are reported separately and do not fail the audit. `summary` prints counts, including all status categories, and supports machine-readable JSON. Commands are noninteractive; diagnostics go to stderr.
+
+Exit codes are 0 for a valid command with no blocking finding, 1 for unresolved audit findings, and 2 for invalid input or execution errors.
+
+## Development
+
+```bash
+uv sync --all-groups
+uv run ruff check .
+uv run ruff format --check .
+uv run pytest
+uv build
+```
+
+GitHub Actions runs lint and format checks, tests, package builds, and CLI smoke checks on Python 3.11, 3.12, and 3.13.
+
+## Real-dataset dogfood
+
+The public [TWDisaster dataset](https://github.com/KageRyo/TWDisaster) publishes positive event-source links but no expected-source eligibility matrix. The [dogfood assessment](examples/twdisaster/README.md) explains why converting absent links into gaps would invent facts and why the current release cannot provide a useful matrix of expected coverage.
+
+## License
+
+EvidenceMatrix is distributed under the [Apache License 2.0](LICENSE).

evidencematrix-0.1.0/README.md

@@ -0,0 +1,125 @@
+# EvidenceMatrix
+
+[![CI](https://github.com/KageRyo/EvidenceMatrix/actions/workflows/ci.yml/badge.svg?branch=main)](https://github.com/KageRyo/EvidenceMatrix/actions/workflows/ci.yml)
+[![PyPI](https://img.shields.io/pypi/v/evidencematrix)](https://pypi.org/project/evidencematrix/)
+[![Latest release](https://img.shields.io/github/v/release/KageRyo/EvidenceMatrix?display_name=tag&sort=semver)](https://github.com/KageRyo/EvidenceMatrix/releases)
+[![Python 3.11+](https://img.shields.io/badge/python-3.11%2B-3776AB?logo=python&logoColor=white)](https://www.python.org/)
+[![License: Apache-2.0](https://img.shields.io/badge/license-Apache--2.0-blue.svg)](LICENSE)
+
+EvidenceMatrix builds deterministic coverage matrices for a declared set of entities and expected sources. It shows which relationships are supported, have known gaps, are unavailable, remain unknown, or do not apply.
+
+EvidenceMatrix was extracted from source-coverage auditing patterns developed in a real-world multi-source data pipeline. It is a standalone tool and does not require that project or its data.
+
+## What it does
+
+- Validates a small YAML or JSON manifest of entities, sources, and coverage declarations.
+- Expands the declared entities and sources into a complete, sorted entity-by-source matrix.
+- Reports status counts and unresolved relationships without assigning a subjective quality score.
+- Writes stable CSV, JSON, and Markdown reports without adding timestamps.
+- Runs locally and offline after installation.
+
+## What it does not do
+
+EvidenceMatrix does not download or transform data, validate arbitrary dataset schemas, verify file integrity, build lineage graphs, align spatial data, manage workflows, or evaluate machine-learning models. Use [LineageGuard](https://github.com/KageRyo/LineageGuard) for artifact origin and lineage, [ReleaseGuard](https://github.com/KageRyo/ReleaseGuard) for dataset release structure and integrity, and [GridForge](https://github.com/KageRyo/GridForge) for spatial alignment.
+
+## Installation
+
+After a release is published, install it with `uv tool install evidencematrix` or `python -m pip install evidencematrix`. To run from a checkout, use Python 3.11 or newer and `uv sync --all-groups`, then prefix commands with `uv run`.
+
+The runtime has one dependency, PyYAML, for safe YAML parsing. JSON input and all audit calculations work offline; the CLI makes no network requests.
+
+## Quick start
+
+The bundled [`examples/basic/coverage.yaml`](examples/basic/coverage.yaml) demonstrates supported, mapping-gap, metadata-gap, unavailable, not-in-release, not-applicable, and unknown relationships.
+
+```bash
+evidencematrix validate examples/basic
+evidencematrix build examples/basic --output ./out
+evidencematrix audit examples/basic
+evidencematrix summary examples/basic
+evidencematrix summary examples/basic --format json
+```
+
+`audit` returns exit code 1 for unresolved relationships in this example. The example contains gaps intentionally; `validate`, `build`, and `summary` succeed with exit code 0.
+
+`build` writes `coverage_matrix.csv`, `coverage_report.json`, `gap_report.json`, `summary.json`, and `coverage_report.md`. The JSON reports use sorted keys and stable indentation; CSV rows sort by entity ID and source ID. Rebuilding identical input with the same tool version produces byte-identical files.
+
+## Input model
+
+A manifest has `version`, `entities`, `sources`, and `coverage` fields. IDs are unique strings. Each source declares its availability. Coverage entries are optional and identify one entity, one source, and one status; `reason` is an optional explanatory string for non-supported states.
+
+```yaml
+version: 1
+
+entities:
+  - id: event-001
+  - id: event-002
+
+sources:
+  - id: cwa
+    availability: available
+  - id: emic
+    availability: unavailable
+
+coverage:
+  - entity: event-001
+    source: cwa
+    status: supported
+  - entity: event-002
+    source: cwa
+    status: mapping_gap
+    reason: no_verified_mapping
+```
+
+The input is deliberately strict: unknown fields, duplicate IDs or relationships, invalid references, duplicate YAML or JSON keys, and contradictory availability declarations fail validation. `PATH` may point to a `.yaml`, `.yml`, or `.json` file, or to a directory containing exactly one such manifest. No external file references are part of schema version 1.
+
+### Availability and coverage status
+
+Source availability and entity-source coverage describe related but separate facts. Availability accepts `available`, `unavailable`, `not_in_release`, and `unknown`. Coverage accepts:
+
+| Status | Meaning |
+| --- | --- |
+| `supported` | The manifest declares evidence for this entity-source relationship. |
+| `metadata_gap` | Required descriptive metadata is missing or unresolved. |
+| `mapping_gap` | The source-to-entity relationship is not established. |
+| `source_unavailable` | The source payload is declared unavailable. |
+| `source_not_in_release` | The expected source is not included in the release being described. |
+| `not_applicable` | The relationship is explicitly outside scope. |
+| `unknown` | The relationship has not been assessed. |
+
+Each entity is paired with every listed source. An explicit coverage row sets that pair's status. If no row exists, a source marked `unavailable` or `not_in_release` determines the corresponding relationship status; otherwise the relationship remains `unknown`. In particular, a missing relationship is never inferred to be a mapping gap. Explicit `not_applicable` relationships stay visible in the matrix and summary, but are excluded from unresolved audit findings.
+
+`supported` is a manifest declaration. EvidenceMatrix checks that declaration's structure and consistency; it does not inspect or authenticate external evidence.
+
+## Commands and exit codes
+
+```text
+evidencematrix validate PATH
+evidencematrix build PATH [--output DIR]
+evidencematrix audit PATH [--format text|json]
+evidencematrix summary PATH [--format text|json]
+```
+
+`validate` checks input without modifying it. `build` creates deterministic reports. `audit` lists unresolved rows and returns 1 when it finds any; `not_applicable` rows are reported separately and do not fail the audit. `summary` prints counts, including all status categories, and supports machine-readable JSON. Commands are noninteractive; diagnostics go to stderr.
+
+Exit codes are 0 for a valid command with no blocking finding, 1 for unresolved audit findings, and 2 for invalid input or execution errors.
+
+## Development
+
+```bash
+uv sync --all-groups
+uv run ruff check .
+uv run ruff format --check .
+uv run pytest
+uv build
+```
+
+GitHub Actions runs lint and format checks, tests, package builds, and CLI smoke checks on Python 3.11, 3.12, and 3.13.
+
+## Real-dataset dogfood
+
+The public [TWDisaster dataset](https://github.com/KageRyo/TWDisaster) publishes positive event-source links but no expected-source eligibility matrix. The [dogfood assessment](examples/twdisaster/README.md) explains why converting absent links into gaps would invent facts and why the current release cannot provide a useful matrix of expected coverage.
+
+## License
+
+EvidenceMatrix is distributed under the [Apache License 2.0](LICENSE).

evidencematrix-0.1.0/examples/basic/coverage.yaml

@@ -0,0 +1,33 @@
+version: 1
+
+entities:
+  - id: incident-001
+  - id: incident-002
+  - id: incident-003
+
+sources:
+  - id: public-registry
+    availability: available
+  - id: road-condition-feed
+    availability: unavailable
+  - id: shelter-directory
+    availability: unknown
+  - id: rainfall-archive
+    availability: not_in_release
+
+coverage:
+  - entity: incident-001
+    source: public-registry
+    status: supported
+  - entity: incident-002
+    source: public-registry
+    status: mapping_gap
+    reason: no_verified_entity_mapping
+  - entity: incident-003
+    source: public-registry
+    status: metadata_gap
+    reason: source_record_has_no_publication_date
+  - entity: incident-001
+    source: shelter-directory
+    status: not_applicable
+    reason: this_example_entity_is_outside_the_directory_scope

evidencematrix-0.1.0/examples/twdisaster/README.md

@@ -0,0 +1,9 @@
+# TWDisaster dogfood assessment
+
+TWDisaster publishes event identities, source records, and explicit positive event-source links in [`data/events.csv`](https://github.com/KageRyo/TWDisaster/blob/main/data/events.csv), [`data/sources.csv`](https://github.com/KageRyo/TWDisaster/blob/main/data/sources.csv), and [`data/event_sources.csv`](https://github.com/KageRyo/TWDisaster/blob/main/data/event_sources.csv). Its data model defines an event-source row as a source supporting at least one included observation for that event.
+
+Those files do not define which sources are expected for each event. Treating every absent event-source row as `mapping_gap`, `source_unavailable`, or `not_applicable` would invent coverage facts; listing every source for every event would also imply an unsupported expected relationship. A sparse EvidenceMatrix manifest can preserve observed links as `supported`, but the remaining full matrix would only say `unknown` and would not answer a useful missing-coverage question.
+
+For v0.1, this dataset does not provide enough information for a meaningful coverage audit without adding unsupported expectations. No TWDisaster rows are copied into this project. A future release that declares expected source eligibility per event can be represented directly as an ordinary EvidenceMatrix manifest.
+
+See the [TWDisaster data model](https://github.com/KageRyo/TWDisaster/blob/main/docs/data-model.md) for the published relationship semantics.

evidencematrix-0.1.0/pyproject.toml

@@ -0,0 +1,53 @@
+[build-system]
+requires = ["setuptools>=77", "wheel"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "evidencematrix"
+version = "0.1.0"
+description = "A deterministic source-coverage audit tool for multi-source datasets"
+readme = "README.md"
+requires-python = ">=3.11"
+license = "Apache-2.0"
+authors = [{ name = "KageRyo" }]
+classifiers = [
+  "Development Status :: 3 - Alpha",
+  "Environment :: Console",
+  "Intended Audience :: Developers",
+  "Operating System :: OS Independent",
+  "Programming Language :: Python :: 3",
+  "Programming Language :: Python :: 3.11",
+  "Programming Language :: Python :: 3.12",
+  "Programming Language :: Python :: 3.13",
+  "Topic :: Database",
+  "Topic :: Scientific/Engineering :: Information Analysis",
+]
+dependencies = ["PyYAML>=6.0,<7"]
+
+[project.urls]
+Homepage = "https://github.com/KageRyo/EvidenceMatrix"
+Repository = "https://github.com/KageRyo/EvidenceMatrix"
+Issues = "https://github.com/KageRyo/EvidenceMatrix/issues"
+
+[project.scripts]
+evidencematrix = "evidencematrix.cli:entrypoint"
+
+[dependency-groups]
+dev = ["build>=1.2", "pytest>=8.0", "ruff>=0.11"]
+
+[tool.setuptools]
+package-dir = { "" = "src" }
+
+[tool.setuptools.packages.find]
+where = ["src"]
+
+[tool.pytest.ini_options]
+testpaths = ["tests"]
+addopts = "-ra"
+
+[tool.ruff]
+target-version = "py311"
+line-length = 100
+
+[tool.ruff.lint]
+select = ["E", "F", "I", "UP", "B"]

evidencematrix-0.1.0/setup.cfg

@@ -0,0 +1,4 @@
+[egg_info]
+tag_build = 
+tag_date = 0
+

evidencematrix-0.1.0/src/evidencematrix/__init__.py

@@ -0,0 +1,18 @@
+"""A deterministic source-coverage audit tool for multi-source datasets."""
+
+from evidencematrix.matrix import build_matrix, summarize_matrix
+from evidencematrix.model import CoverageStatus, SourceAvailability
+from evidencematrix.parser import load_manifest
+from evidencematrix.validation import ManifestError, validate_document
+
+__all__ = [
+    "CoverageStatus",
+    "ManifestError",
+    "SourceAvailability",
+    "build_matrix",
+    "load_manifest",
+    "summarize_matrix",
+    "validate_document",
+]
+
+__version__ = "0.1.0"

evidencematrix-0.1.0/src/evidencematrix/audit.py

@@ -0,0 +1,25 @@
+"""Coverage finding selection without subjective scoring."""
+
+from __future__ import annotations
+
+from evidencematrix.model import (
+    COVERAGE_STATUS_ORDER,
+    UNRESOLVED_STATUSES,
+    AuditReport,
+    CoverageRecord,
+)
+
+
+def audit_matrix(matrix: tuple[CoverageRecord, ...]) -> AuditReport:
+    """Return unresolved relationships; supported and not-applicable rows are excluded."""
+
+    counts = {status.value: 0 for status in COVERAGE_STATUS_ORDER}
+    for record in matrix:
+        counts[record.status.value] += 1
+    findings = tuple(record for record in matrix if record.status in UNRESOLVED_STATUSES)
+    return AuditReport(
+        relationship_count=len(matrix),
+        status_counts=counts,
+        finding_count=len(findings),
+        findings=findings,
+    )