euprima 0.1.1__tar.gz

euprima-0.1.1/.gitignore

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+.DS_Store
+dist/
+.pypi-setup/

euprima-0.1.1/.gitmodules

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+[submodule "tests/eulearning"]
+	path = tests/eulearning
+	url = https://github.com/vadimlebovici/eulearning.git

euprima-0.1.1/PKG-INFO

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+Metadata-Version: 2.2
+Name: euprima
+Version: 0.1.1
+Summary: Euler characteristic profiles for image analysis
+Requires-Python: >=3.8
+Requires-Dist: numpy
+Requires-Dist: pandas
+Description-Content-Type: text/markdown
+
+# euprima
+<b>Eu</b>ler (characteristic) <b>pr</b>ofiles for <b>im</b>age <b>a</b>nalysis.
+
+# Disclaimer
+This project was started as a prototype implementation for my bachelors thesis on the _efficient computation of Euler characteristic profiles for three-channel digital images_. 
+Once the thesis has been accepted, it will also be linked to from this README. 
+
+At the moment this repository is still very much a **work in progress** and hence very unorganized and messy. 
+Once I finally come up with a better (i.e. more organized) folder structure, this repository will be reorganized accordingly. 
+
+# Installing the Python package
+You can find the Python interface on PyPI as the [`euprima`]() package. 
+It can be installed using 
+```bash
+pip install euprima
+```
+For the installation you will need a C++ compiler, `cmake` and `pybind11`. 
+
+# Closing the repository
+This repository uses the [`eulearning`](https://github.com/vadimlebovici/eulearning) repository by Hacquard and Lebovici as a Git submodule for benchmarking.
+Clone the repository using the `--recursive` flag to pull down the benchmark files automatically:
+
+```bash
+git clone --recursive https://github.com/mazmap/euprima.git
+```
+
+In case you forgot the `--recursive` flag, you can execute
+```bash
+git submodule update --init --recursive
+```
+after cloning
+
+# Testing and Benchmarks
+For executing the tests and benchmarks in `tests/` you will need various Python packages such as `numpy` and `pandas`. 
+To install all required packages, you can use the [`uv`](https://docs.astral.sh/uv/) package/project manager. 
+All dependencies are listed in `tests/pyproject.toml` (including the `euprima` package). 
+For the benchmarks against the [`eulearning`](https://github.com/vadimlebovici/eulearning) implementation by Hacquard and Lebovici, you have to clone the `eulearning/` folder from their repository into `tests/eulearning/` or clone it as a submodule as described above. 
+
+# Documentation
+I am working on a documentation with clear usage examples for the functions we provide via the `pybind11` interface.
+For now, consult the test and benchmark files in `tests/` to get an idea of how the functions are supposed to be used. 

euprima-0.1.1/README.md

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+# euprima
+<b>Eu</b>ler (characteristic) <b>pr</b>ofiles for <b>im</b>age <b>a</b>nalysis.
+
+# Disclaimer
+This project was started as a prototype implementation for my bachelors thesis on the _efficient computation of Euler characteristic profiles for three-channel digital images_. 
+Once the thesis has been accepted, it will also be linked to from this README. 
+
+At the moment this repository is still very much a **work in progress** and hence very unorganized and messy. 
+Once I finally come up with a better (i.e. more organized) folder structure, this repository will be reorganized accordingly. 
+
+# Installing the Python package
+You can find the Python interface on PyPI as the [`euprima`]() package. 
+It can be installed using 
+```bash
+pip install euprima
+```
+For the installation you will need a C++ compiler, `cmake` and `pybind11`. 
+
+# Closing the repository
+This repository uses the [`eulearning`](https://github.com/vadimlebovici/eulearning) repository by Hacquard and Lebovici as a Git submodule for benchmarking.
+Clone the repository using the `--recursive` flag to pull down the benchmark files automatically:
+
+```bash
+git clone --recursive https://github.com/mazmap/euprima.git
+```
+
+In case you forgot the `--recursive` flag, you can execute
+```bash
+git submodule update --init --recursive
+```
+after cloning
+
+# Testing and Benchmarks
+For executing the tests and benchmarks in `tests/` you will need various Python packages such as `numpy` and `pandas`. 
+To install all required packages, you can use the [`uv`](https://docs.astral.sh/uv/) package/project manager. 
+All dependencies are listed in `tests/pyproject.toml` (including the `euprima` package). 
+For the benchmarks against the [`eulearning`](https://github.com/vadimlebovici/eulearning) implementation by Hacquard and Lebovici, you have to clone the `eulearning/` folder from their repository into `tests/eulearning/` or clone it as a submodule as described above. 
+
+# Documentation
+I am working on a documentation with clear usage examples for the functions we provide via the `pybind11` interface.
+For now, consult the test and benchmark files in `tests/` to get an idea of how the functions are supposed to be used. 

euprima-0.1.1/pyproject.toml

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+[build-system]
+requires = ["scikit-build-core>=0.5.0", "pybind11>=2.13.1"]
+build-backend = "scikit_build_core.build"
+
+[project]
+name = "euprima"
+version = "0.1.1"
+description = "Euler characteristic profiles for image analysis"
+readme = "README.md"
+requires-python = ">=3.8"
+dependencies = [
+    "numpy",
+    "pandas"
+]
+
+[tool.scikit-build]
+cmake.build-type = "Release"
+cmake.source-dir = "src"

euprima-0.1.1/src/CMakeLists.txt

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+cmake_minimum_required(VERSION 3.15)
+project(euprima LANGUAGES CXX)
+
+find_package(pybind11 REQUIRED)
+
+pybind11_add_module(_core cppbinding/profiles.cpp)
+
+target_compile_options(_core PRIVATE
+    $<$<CXX_COMPILER_ID:GNU>:-O3>
+    $<$<CXX_COMPILER_ID:Clang>:-O3>
+    $<$<CXX_COMPILER_ID:MSVC>:/O2>
+)
+
+install(TARGETS _core DESTINATION euprima)

euprima-0.1.1/src/cppbinding/.clang-format

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+BasedOnStyle: LLVM
+IndentWidth: 4                  # Sets spacing/indent to 4 spaces
+IndentCaseLabels: true
+AllowShortBlocksOnASingleLine: Never
+# SpaceBeforeParens: ControlStatements # Adds correct spacing, e.g., "if (cond)" instead of "if(cond)"