ethograph 0.2.52__tar.gz → 0.2.53__tar.gz

{ethograph-0.2.52 → ethograph-0.2.53}/.gitignore

@@ -1,6 +1,6 @@
 
-projects/
-!projects/defaults/*
+/projects/
+!/projects/defaults/*
 spot_frames/
 *pynapple_burst_r_to_python.html
 result/

{ethograph-0.2.52 → ethograph-0.2.53}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: ethograph
-Version: 0.2.52
+Version: 0.2.53
 Summary: A multimodal timeseries GUI for neuroethology
 Author-email: Akseli Ilmanen <akseli.ilmanen@gmail.com>
 License-Expression: GPL-3.0-or-later

{ethograph-0.2.52 → ethograph-0.2.53}/ethograph/defaults/README.md

@@ -49,3 +49,10 @@ references:
 
 Add a file to this folder via PR to ship it as a default. The example configs
 must keep loading: `tests/test_unit/test_home_layout.py` builds each one.
+
+## Bundled projects (`ethograph/projects/`)
+
+Each folder here is a whole project, seeded into `~/.ethograph/{name}/` the
+same way (`seed_bundled_projects`). The repo's `projects/crowlab/` is the
+working copy; `ethograph/projects/crowlab/` is what ships, and a test keeps
+the two equal. `runs/`, `sessions/`, `sessions.txt` and `wizard/` never ship.

{ethograph-0.2.52 → ethograph-0.2.53}/ethograph/gui/cover_page.py

@@ -88,7 +88,7 @@ from ethograph.io.validation import (
     VIDEO_EXTENSIONS,
     movement_dataset_info,
 )
-from ethograph.utils.paths import SETTINGS_DIR, defaults_dir, seed_defaults
+from ethograph.utils.paths import SETTINGS_DIR, defaults_dir, seed_bundled_projects, seed_defaults
 
 # POSE_SOFTWARES is shared with the pose-overlay prompt in pose_render.
 from .app_constants import POSE_SOFTWARES
@@ -595,6 +595,7 @@ class CoverPage(QDialog):
         if chosen_project_dir(self.app_state) is not None:
             return
         seed_defaults()
+        seed_bundled_projects()
         starter = defaults_dir()
         starter.mkdir(parents=True, exist_ok=True)
         self.app_state.project_path = str(starter)

{ethograph-0.2.52 → ethograph-0.2.53}/ethograph/gui/pygfx_video.py

@@ -17,8 +17,10 @@ Seeking model:
 from __future__ import annotations
 
 import logging
+import multiprocessing
 import os
 import queue
+import sys
 import time
 from types import MethodType
 from typing import Optional
@@ -39,6 +41,25 @@ from .pose_overlay import PoseOverlay
 logger = logging.getLogger(__name__)
 
 
+def _spawn_decode_workers_on_macos() -> None:
+    """Start pynaviz's decode worker with ``spawn`` on macOS, as on Windows.
+
+    pynaviz forces the ``fork`` start method on every non-Windows platform at
+    import. Forking a process that already runs Cocoa, Metal/wgpu and libav
+    threads is unsupported on macOS: pynaviz's own tests record the worker
+    dying with SIGSEGV at start-up because the libav demux thread's mutexes are
+    copied locked. A dead worker serves no async seek, so a single-frame step
+    moves the playhead but never the picture. ``spawn`` is the path Windows
+    already takes; its slow start-up is covered by the cold-decoder bridge in
+    :class:`~ethograph.gui.video_sync.VideoSync`.
+    """
+    if sys.platform == "darwin":
+        multiprocessing.set_start_method("spawn", force=True)
+
+
+_spawn_decode_workers_on_macos()
+
+
 # Heartbeat age past which the render chain is considered dead (see
 # install_animate_guard / nudge_stalled_render). animate() normally re-arms
 # itself every frame, so one full second without a beat is a stall.

{ethograph-0.2.52 → ethograph-0.2.53}/ethograph/gui/video_sync.py

@@ -148,7 +148,18 @@ class VideoSync(QObject):
         # leftover marker override from a prior continuous-end segment finish.
         self.marker_time_override = None
         frame = max(0, min(int(frame), self.total_frames - 1)) if self.total_frames else 0
+        # Same cold-worker tolerance as playback: an async seek against a
+        # worker that has not yet served a frame is dropped, so decode this
+        # one in-process too — an arrow step must always show its frame.
         self.view.seek_trial_frame(frame)
+        if not self.view.decoder_ready():
+            self.view.seek_trial_frame(frame, synchronous=True)
+        # The async path presents only through pynaviz's self-re-arming
+        # animate chain; the playback watchdog is the only other thing that
+        # restarts a dead one, and it does not run while stopped.
+        nudge = getattr(self.view, "nudge_render_if_stalled", None)
+        if nudge is not None and nudge():
+            logger.warning("Video render loop was stalled; re-armed the draw chain on seek.")
         self._apply_frame(frame)
 
     def _apply_frame(self, frame: int):

ethograph-0.2.53/ethograph/projects/crowlab/calibration/3D_Analysis_FM.toml

@@ -0,0 +1,19 @@
+[cam_0]
+name = "cam-1"
+size = [ 512, 562,]
+matrix = [ [ 515.0444008533133, 0.0, 154.22201617442832,], [ 0.0, 516.1419476946951, 214.07447948182286,], [ 0.0, 0.0, 1.0,],]
+distortions = [ -0.24221547972788354, 0.14346556993892795, -0.00515831655881969, 0.0013725514104746081, -0.05702948956575608,]
+rotation = [ -0.017371108987220343, 0.16771373111094, -0.10326866065634688,]
+translation = [ 0.0, 0.0, 0.0,]
+
+[cam_1]
+name = "cam-2"
+size = [ 512, 562,]
+matrix = [ [ 533.4865830454712, 0.0, 374.39479229820057,], [ 0.0, 536.7981372559631, 213.1519682543075,], [ 0.0, 0.0, 1.0,],]
+distortions = [ -0.27059396933244, 0.16683263775789742, -0.004176269919434861, -0.0009247729826822582, -0.05652783562214587,]
+rotation = [ 0.01735481150521321, 0.09175313109782211, -0.08864227449585904,]
+translation = [ -5.728928454834148, 0.5059804012673216, 0.5329275489838221,]
+
+[metadata]
+source = "deeplabcut_3d"
+source_folder = "C:\\Users\\aksel\\Documents\\DLC\\3D_Analysis_FM"

{ethograph-0.2.52 → ethograph-0.2.53/ethograph}/projects/crowlab/mapping.txt

@@ -29,6 +29,6 @@
 31 pelletStickFirstContact 1 point
 32 pelletStickLastContact 1 point
 33 pelletStickContact 1
-35 pelletReady 1
-36 pelletBeakContact 1
+34 pelletReady 1
+35 pelletBeakContact 1
 50 stimulation 0

{ethograph-0.2.52 → ethograph-0.2.53}/ethograph/utils/download.py

@@ -179,12 +179,13 @@ def ensure_default_configs() -> None:
     """
     import sys
 
-    from ethograph.utils.paths import ethograph_home, migrate_home_layout, seed_defaults
+    from ethograph.utils.paths import ethograph_home, migrate_home_layout, seed_bundled_projects, seed_defaults
 
     migrate_home_layout()
     global_dir = ethograph_home()
     global_dir.mkdir(parents=True, exist_ok=True)
     seed_defaults()
+    seed_bundled_projects()
 
     if sys.platform == "win32":
         internal = global_dir / "_internal"

{ethograph-0.2.52 → ethograph-0.2.53}/ethograph/utils/paths.py

@@ -91,6 +91,9 @@ def ethograph_home() -> Path:
 #   defaults/           a project directory's layout, used while no project
 #                       is open: mapping.txt, skeleton/, space/, runs/lightgbm/,
 #                       workflows/, wizard/
+#   {name}/             a bundled project (ethograph/projects/{name}/), seeded
+#                       like defaults/ so a lab's vocabulary, workflows,
+#                       calibrations and geometries arrive with the install
 #
 # Everything about a *study* is meant to live in a project directory; these
 # are the fallbacks for a session opened without one, in the same shape.
@@ -146,26 +149,37 @@ def logs_dir() -> Path:
 BUNDLED_DEFAULTS_DIR = Path(__file__).resolve().parents[1] / "defaults"
 
 
-def seed_defaults(dest: Path | None = None) -> list[Path]:
-    """Copy every bundled default into *dest* (``defaults_dir()``) that is not there yet.
+#: Whole project folders shipped beside the defaults (``ethograph/projects/{name}/``),
+#: each seeded into ``~/.ethograph/{name}/`` by :func:`seed_bundled_projects`.
+BUNDLED_PROJECTS_DIR = Path(__file__).resolve().parents[1] / "projects"
 
-    File by file, so an example added in a later release reaches an existing
-    install; a file the user edited is never overwritten. ``README.md`` is
-    documentation for the repo, not a default, and is skipped.
+#: What a bundled project leaves behind: trained runs, session records and the
+#: wizard's folder history are the maintainer's machine, not the project.
+BUNDLED_PROJECT_EXCLUDES = frozenset({"runs", "sessions", "sessions.txt", "wizard"})
 
-    Returns
-    -------
-    list of Path
-        The files written.
+
+def bundled_project_dir(name: str) -> Path:
+    """``~/.ethograph/{name}`` — where the bundled project *name* is seeded."""
+    return ethograph_home() / name
+
+
+def _seed_tree(source: Path, dest: Path, skip: frozenset[str]) -> list[Path]:
+    """Copy every file under *source* into *dest* that is not there yet.
+
+    File by file, so a file added in a later release reaches an existing
+    install; a file the user edited is never overwritten. A top-level entry
+    named in *skip* is left out entirely.
     """
     import shutil
 
-    dest = defaults_dir() if dest is None else dest
     written: list[Path] = []
-    for src in sorted(BUNDLED_DEFAULTS_DIR.rglob("*")):
-        if not src.is_file() or src.name == "README.md":
+    for src in sorted(source.rglob("*")):
+        if not src.is_file():
+            continue
+        rel = src.relative_to(source)
+        if rel.parts[0] in skip:
             continue
-        target = dest / src.relative_to(BUNDLED_DEFAULTS_DIR)
+        target = dest / rel
         if target.exists():
             continue
         target.parent.mkdir(parents=True, exist_ok=True)
@@ -174,6 +188,41 @@ def seed_defaults(dest: Path | None = None) -> list[Path]:
     return written
 
 
+def seed_defaults(dest: Path | None = None) -> list[Path]:
+    """Copy every bundled default into *dest* (``defaults_dir()``) that is not there yet.
+
+    ``README.md`` is documentation for the repo, not a default, and is skipped.
+
+    Returns
+    -------
+    list of Path
+        The files written.
+    """
+    dest = defaults_dir() if dest is None else dest
+    return _seed_tree(BUNDLED_DEFAULTS_DIR, dest, frozenset({"README.md"}))
+
+
+def seed_bundled_projects(home: Path | None = None) -> list[Path]:
+    """Seed every folder of :data:`BUNDLED_PROJECTS_DIR` into ``{home}/{name}/``.
+
+    Same contract as :func:`seed_defaults`: new files arrive, edited files
+    stay. :data:`BUNDLED_PROJECT_EXCLUDES` never leave the package.
+
+    Returns
+    -------
+    list of Path
+        The files written.
+    """
+    home = ethograph_home() if home is None else home
+    written: list[Path] = []
+    if not BUNDLED_PROJECTS_DIR.is_dir():
+        return written
+    for project in sorted(BUNDLED_PROJECTS_DIR.iterdir()):
+        if project.is_dir() and not project.name.startswith("_"):
+            written.extend(_seed_tree(project, home / project.name, BUNDLED_PROJECT_EXCLUDES))
+    return written
+
+
 def migrate_home_layout(home: Path | None = None) -> list[tuple[Path, Path]]:
     """Move pre-layout folders under ``cache/`` and ``defaults/``.
 

{ethograph-0.2.52 → ethograph-0.2.53}/ethograph.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: ethograph
-Version: 0.2.52
+Version: 0.2.53
 Summary: A multimodal timeseries GUI for neuroethology
 Author-email: Akseli Ilmanen <akseli.ilmanen@gmail.com>
 License-Expression: GPL-3.0-or-later

{ethograph-0.2.52 → ethograph-0.2.53}/ethograph.egg-info/SOURCES.txt

@@ -255,6 +255,15 @@ ethograph/labels/tsv_store.py
 ethograph/labels/workflow.py
 ethograph/labels/exporters/__init__.py
 ethograph/labels/exporters/crowlab.py
+ethograph/projects/crowlab/ReadMe.md
+ethograph/projects/crowlab/mapping.txt
+ethograph/projects/crowlab/mapping_setup_audio.txt
+ethograph/projects/crowlab/calibration/3D_Analysis_FM.toml
+ethograph/projects/crowlab/space/moll2025.yaml
+ethograph/projects/crowlab/workflows/01 PES Curation.yaml
+ethograph/projects/crowlab/workflows/Freddy_GBM.yaml
+ethograph/projects/crowlab/workflows/Ivy_GBM.yaml
+ethograph/projects/crowlab/workflows/Poppy_GBM.yaml
 ethograph/samfill/__init__.py
 ethograph/samfill/config.py
 ethograph/samfill/fill.py
@@ -478,31 +487,7 @@ notes/prototypes/smoothing_ui.html
 projects/crowlab/ReadMe.md
 projects/crowlab/mapping.txt
 projects/crowlab/mapping_setup_audio.txt
-projects/crowlab/project.yaml
 projects/crowlab/sessions.txt
-projects/crowlab/config/space/moll2025.yaml
-projects/crowlab/old config/changepoint_settings_old.yaml
-projects/crowlab/old config/mapping_Ivy.txt
-projects/crowlab/old config/old segmentation config/Crow1_inference_20260330_161224.json
-projects/crowlab/old config/old segmentation config/Crow1_inference_20260330_161259.json
-projects/crowlab/old config/old segmentation config/Freddy_inference_20260330_160621.json
-projects/crowlab/old config/old segmentation config/Freddy_train_20251021_164220.json
-projects/crowlab/old config/old segmentation config/Freddy_train_20251021_164220_epoch-100.model
-projects/crowlab/old config/old segmentation config/Ivy_CV_20260130_173800.json
-projects/crowlab/old config/old segmentation config/Ivy_inference_20260203_092442.json
-projects/crowlab/old config/old segmentation config/Ivy_inference_20260204_141527.json
-projects/crowlab/old config/old segmentation config/Ivy_inference_20260206_122331.json
-projects/crowlab/old config/old segmentation config/Ivy_train_20260202_191138_epoch-100.model
-projects/crowlab/old config/old segmentation config/Ivy_train_20260203_153754.json
-projects/crowlab/old config/old segmentation config/Poppy_inference_20260312_100707.json
-projects/crowlab/old config/old segmentation config/Poppy_inference_20260327_102414.json
-projects/crowlab/old config/old segmentation config/Poppy_inference_20260330_140808.json
-projects/crowlab/old config/old segmentation config/Poppy_inference_20260402_104151.json
-projects/crowlab/old config/old segmentation config/Poppy_train_20260326_190925.json
-projects/crowlab/old config/old segmentation config/Poppy_train_20260331_175332.json
-projects/crowlab/old config/old segmentation config/ReadMe - model Freddy_train_20251021_164220_epoch-100.txt
-projects/crowlab/wizard/CrowBench.ipynb
-projects/crowlab/wizard/SENTINEL.txt
 projects/crowlab/workflows/01 PES Curation.yaml
 projects/crowlab/workflows/Freddy_GBM.yaml
 projects/crowlab/workflows/Ivy_GBM.yaml

{ethograph-0.2.52 → ethograph-0.2.53}/ethograph.egg-info/scm_file_list.json

@@ -88,7 +88,6 @@
     "docs/source/advanced/gui_index.md",
     "docs/source/advanced/index.md",
     "docs/source/advanced/metadata.md",
-    "docs/source/advanced/migrating_from_boris.md",
     "docs/source/advanced/playback.md",
     "docs/source/advanced/refinement.md",
     "docs/source/advanced/shortcuts.md",
@@ -234,6 +233,7 @@
     "docs/source/getting_started/your_data/folder_layout.md",
     "docs/source/getting_started/your_data/index.md",
     "docs/source/getting_started/your_data/media_alignment.md",
+    "docs/source/getting_started/your_data/migrating_from_boris.md",
     "docs/source/getting_started/your_data/trials.md",
     "docs/source/index.rst",
     "docs/source/models/curation.md",
@@ -493,6 +493,15 @@
     "ethograph/labels/review_metrics.py",
     "ethograph/labels/tsv_store.py",
     "ethograph/labels/workflow.py",
+    "ethograph/projects/crowlab/ReadMe.md",
+    "ethograph/projects/crowlab/calibration/3D_Analysis_FM.toml",
+    "ethograph/projects/crowlab/mapping.txt",
+    "ethograph/projects/crowlab/mapping_setup_audio.txt",
+    "ethograph/projects/crowlab/space/moll2025.yaml",
+    "ethograph/projects/crowlab/workflows/01 PES Curation.yaml",
+    "ethograph/projects/crowlab/workflows/Freddy_GBM.yaml",
+    "ethograph/projects/crowlab/workflows/Ivy_GBM.yaml",
+    "ethograph/projects/crowlab/workflows/Poppy_GBM.yaml",
     "ethograph/samfill/__init__.py",
     "ethograph/samfill/config.py",
     "ethograph/samfill/fill.py",
@@ -715,33 +724,9 @@
     "notes/feedback/reverted_pynapple_trials_timing.diff",
     "notes/prototypes/smoothing_ui.html",
     "projects/crowlab/ReadMe.md",
-    "projects/crowlab/config/space/moll2025.yaml",
     "projects/crowlab/mapping.txt",
     "projects/crowlab/mapping_setup_audio.txt",
-    "projects/crowlab/old config/changepoint_settings_old.yaml",
-    "projects/crowlab/old config/mapping_Ivy.txt",
-    "projects/crowlab/old config/old segmentation config/Crow1_inference_20260330_161224.json",
-    "projects/crowlab/old config/old segmentation config/Crow1_inference_20260330_161259.json",
-    "projects/crowlab/old config/old segmentation config/Freddy_inference_20260330_160621.json",
-    "projects/crowlab/old config/old segmentation config/Freddy_train_20251021_164220.json",
-    "projects/crowlab/old config/old segmentation config/Freddy_train_20251021_164220_epoch-100.model",
-    "projects/crowlab/old config/old segmentation config/Ivy_CV_20260130_173800.json",
-    "projects/crowlab/old config/old segmentation config/Ivy_inference_20260203_092442.json",
-    "projects/crowlab/old config/old segmentation config/Ivy_inference_20260204_141527.json",
-    "projects/crowlab/old config/old segmentation config/Ivy_inference_20260206_122331.json",
-    "projects/crowlab/old config/old segmentation config/Ivy_train_20260202_191138_epoch-100.model",
-    "projects/crowlab/old config/old segmentation config/Ivy_train_20260203_153754.json",
-    "projects/crowlab/old config/old segmentation config/Poppy_inference_20260312_100707.json",
-    "projects/crowlab/old config/old segmentation config/Poppy_inference_20260327_102414.json",
-    "projects/crowlab/old config/old segmentation config/Poppy_inference_20260330_140808.json",
-    "projects/crowlab/old config/old segmentation config/Poppy_inference_20260402_104151.json",
-    "projects/crowlab/old config/old segmentation config/Poppy_train_20260326_190925.json",
-    "projects/crowlab/old config/old segmentation config/Poppy_train_20260331_175332.json",
-    "projects/crowlab/old config/old segmentation config/ReadMe - model Freddy_train_20251021_164220_epoch-100.txt",
-    "projects/crowlab/project.yaml",
     "projects/crowlab/sessions.txt",
-    "projects/crowlab/wizard/CrowBench.ipynb",
-    "projects/crowlab/wizard/SENTINEL.txt",
     "projects/crowlab/workflows/01 PES Curation.yaml",
     "projects/crowlab/workflows/Freddy_GBM.yaml",
     "projects/crowlab/workflows/Ivy_GBM.yaml",
@@ -797,9 +782,7 @@
     "scripts/test.ipynb",
     "scripts/train_spot.py",
     "tests/__init__.py",
-    "tests/_test_boris_gui_smoke.py",
     "tests/_test_burst_r_reference.py",
-    "tests/_test_gutter_probe.py",
     "tests/conftest.py",
     "tests/old_tests/README.md",
     "tests/old_tests/test_box_labelling.py",

ethograph-0.2.53/ethograph.egg-info/scm_version.json

@@ -0,0 +1,8 @@
+{
+  "tag": "0.2.53",
+  "distance": 0,
+  "node": "g08a4530",
+  "dirty": false,
+  "branch": "HEAD",
+  "node_date": "2026-10-16"
+}

ethograph-0.2.53/projects/crowlab/ReadMe.md

@@ -0,0 +1 @@
+These configs are internal to crowlab, not relevant for general ethograph users.

ethograph-0.2.53/projects/crowlab/mapping.txt

@@ -0,0 +1,34 @@
+0 background 0
+1 pullOutStick 0
+2 diagonalToBox 0
+3 toss 0
+4 swoop 0
+5 reachLeftCorner 0
+6 right 0
+7 pullOutAlongWall 0
+8 swoopOut 0
+9 stickToDisp 0
+10 stickInDisp 0
+11 lookToPellet 0
+12 snapPellet 0
+13 eat 0
+14 reachRightCorner 0
+15 nodding 0
+16 beakToDisp 0
+17 stickInDispTwo 0
+18 loseStick 0
+19 pickUpStick 0
+20 shake 0
+21 shiftRight 0
+22 shiftLeft 0
+23 pullOutLeft 0
+24 swoopOutLeft 0
+25 lookgToFallingPellet 0
+26 postNod 0
+27 reachRightCornerInTwo 0
+31 pelletStickFirstContact 1 point
+32 pelletStickLastContact 1 point
+33 pelletStickContact 1
+34 pelletReady 1
+35 pelletBeakContact 1
+50 stimulation 0

ethograph-0.2.53/projects/crowlab/mapping_setup_audio.txt

@@ -0,0 +1,8 @@
+0 background
+1 Pellet_Feeder_Motor
+2 Pellet_Rutsche
+3 Klappe_auf
+4 Schieber
+5 Klappe_zu
+6 Stick_out
+7 Stick_Motor_Pull

ethograph-0.2.53/projects/crowlab/workflows/01 PES Curation.yaml

@@ -0,0 +1,48 @@
+name: 01 PES Curation
+description: ''
+steps:
+- kind: filter_trials
+  params:
+    filters:
+    - column: num_pellets
+      values:
+      - '1'
+      - '2'
+    - column: poscat
+      values:
+      - '1'
+      - '3'
+    clear_first: true
+- kind: delete_labels
+  params:
+    which: hidden
+    label_ids:
+    - 31
+    - 32
+- kind: scope
+  params:
+    label_ids:
+    - 31
+    - 32
+    mode: frame
+- kind: label_grid
+  params:
+    cameras:
+    - cam-1
+    methods: automated
+    columns: 3
+    window_s: 0.5
+    panels:
+    - feature: pellet_stickClosest_dist
+      selections:
+        individual: Freddy
+        keypoint: beakTip
+        s3d_dims: '0'
+        space: x
+      title: pellet_stickClosest_dist
+    axis_auto: true
+    skip_video: true
+    threshold: 0.6
+    grid_mode: uncurate
+    mark_flagged: false
+    generate: true

ethograph-0.2.53/projects/crowlab/workflows/Freddy_GBM.yaml

@@ -0,0 +1,43 @@
+name: Freddy_GBM
+description: ''
+steps:
+- kind: filter_trials
+  params:
+    filters:
+    - column: num_pellets
+      values:
+      - '1'
+      - '2'
+    clear_first: true
+- kind: predict
+  params:
+    model: pelletContact_Freddy
+    individual: Freddy
+    min_confidence: 0.005
+- kind: scope
+  params:
+    label_ids:
+    - 31
+    - 32
+    mode: frame
+- kind: label_grid
+  params:
+    cameras:
+    - cam-1
+    methods: automated
+    columns: 3
+    window_s: 0.3
+    panels:
+    - feature: pellet_stickClosest_dist
+      selections:
+        individual: Freddy
+        keypoint: beakTip
+        s3d_dims: '0'
+        space: x
+      title: pellet_stickClosest_dist
+    axis_auto: true
+    skip_video: true
+    threshold: 0.8
+    grid_mode: uncurate
+    mark_flagged: false
+    generate: true

ethograph-0.2.53/projects/crowlab/workflows/Ivy_GBM.yaml

@@ -0,0 +1,47 @@
+name: Ivy_GBM
+description: ''
+steps:
+- kind: filter_trials
+  params:
+    filters:
+    - column: num_pellets
+      values:
+      - '1'
+      - '2'
+    - column: poscat
+      values:
+      - '1'
+      - '3'
+    clear_first: true
+- kind: predict
+  params:
+    model: pelletContact_Ivy2
+    individual: Ivy
+    min_confidence: 0.0
+- kind: scope
+  params:
+    label_ids:
+    - 31
+    - 32
+    mode: frame
+- kind: label_grid
+  params:
+    cameras:
+    - cam-1
+    methods: automated
+    columns: 3
+    window_s: 0.3
+    panels:
+    - feature: pellet_stickClosest_dist
+      selections:
+        individual: Ivy
+        keypoint: beakTip
+        s3d_dims: '0'
+        space: x
+      title: pellet_stickClosest_dist
+    axis_auto: true
+    skip_video: true
+    threshold: 0.8
+    grid_mode: uncurate
+    mark_flagged: false
+    generate: true

ethograph-0.2.53/projects/crowlab/workflows/Poppy_GBM.yaml

@@ -0,0 +1,43 @@
+name: Poppy_GBM
+description: ''
+steps:
+- kind: filter_trials
+  params:
+    filters:
+    - column: num_pellets
+      values:
+      - '1'
+      - '2'
+    clear_first: true
+- kind: predict
+  params:
+    model: pelletContact_Poppy
+    individual: Poppy
+    min_confidence: 0.005
+- kind: scope
+  params:
+    label_ids:
+    - 31
+    - 32
+    mode: frame
+- kind: label_grid
+  params:
+    cameras:
+    - cam-1
+    methods: automated
+    columns: 1
+    window_s: 0.3
+    panels:
+    - feature: pellet_stickClosest_dist
+      selections:
+        individual: Poppy
+        keypoint: beakTip
+        s3d_dims: '0'
+        space: x
+      title: pellet_stickClosest_dist
+    axis_auto: true
+    skip_video: true
+    threshold: 0.8
+    grid_mode: uncurate
+    mark_flagged: false
+    generate: true

{ethograph-0.2.52 → ethograph-0.2.53}/pyproject.toml

@@ -212,7 +212,7 @@ exclude = ["tests", "docs*"]
 
 [tool.setuptools.package-data]
 "ethograph.gui" = ["*.yaml", "assets/templates/*", "assets/wizard/*", "templates/*.j2", "templates/notebook/*"]
-ethograph = ["assets/*", "assets/space/*", "defaults/*", "defaults/**/*"]
+ethograph = ["assets/*", "assets/space/*", "defaults/*", "defaults/**/*", "projects/*", "projects/**/*"]
 "ethograph._vendor.vocalseg" = ["LICENSE", "NOTICE.md"]
 "ethograph._vendor.samurai" = ["LICENSE", "NOTICE.md"]
 # The architectures read their defaults from these at build time — see NOTICE.md.

ethograph-0.2.52/ethograph.egg-info/scm_version.json

@@ -1,8 +0,0 @@
-{
-  "tag": "0.2.52",
-  "distance": 0,
-  "node": "g19abe87",
-  "dirty": false,
-  "branch": "HEAD",
-  "node_date": "2026-10-14"
-}

ethograph-0.2.52/projects/crowlab/old config/changepoint_settings_old.yaml

@@ -1,13 +0,0 @@
-min_label_length_s: 0.05
-label_thresholds:
-  '3': 0.03
-  '8': 0.03
-  '9': 0.03
-  '10': 0.03
-  '17': 0.03
-  '24': 0.03
-stitch_gap_len_s: 0.015
-changepoint_params:
-  max_expansion_s: 0.05
-  max_shrink_s: 0.05
-sr: 200